PDB Chemical Component PM1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PM1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.429	1.378
C1	C6	1.438	1.414
C1	C23	1.523	1.475
C2	N3	1.370	1.349
C2	H2	1.103	1.080
N3	C4	1.437	1.368
N3	C10	1.408	1.389
C4	C5	1.398	1.407
C4	N12	1.353	1.332
C5	C6	1.435	1.358
C5	H5	1.103	1.080
C6	H6	1.103	1.080
C10	C11	1.416	1.398
C10	C13	1.478	1.408
C11	N12	1.344	1.328
C11	N35	1.463	1.386
C13	C14	1.484	1.479
C13	O34	1.250	1.220
C14	C15	1.448	1.396
C14	C19	1.438	1.395
C15	C16	1.445	1.379
C15	H15	1.103	1.080
C16	C17	1.429	1.383
C16	H16	1.103	1.081
C17	C18	1.431	1.383
C17	H17	1.103	1.080
C18	C19	1.438	1.380
C18	H18	1.103	1.080
C19	H19	1.103	1.079
C23	C24	1.539	1.475
C23	O33	1.257	1.216
C24	C25	1.437	1.399
C24	C29	1.486	1.399
C25	C26	1.436	1.382
C25	F36	1.334	1.351
C26	C27	1.433	1.382
C26	H26	1.103	1.080
C27	C28	1.431	1.383
C27	H27	1.103	1.081
C28	C29	1.436	1.382
C28	H28	1.103	1.080
C29	F39	1.342	1.351
N35	H351	1.019	0.970
N35	H352	1.020	0.969

Bond Angles for PM1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	116.2	119.6
C2	C1	C23	123.6	120.2
C1	C2	N3	123.7	120.5
C1	C2	H2	120.4	119.8
C6	C1	C23	120.1	120.2
C1	C6	C5	121.1	119.4
C1	C6	H6	119.5	120.2
C1	C23	C24	119.0	120.0
C1	C23	O33	120.3	120.0
N3	C2	H2	115.9	119.7
C2	N3	C4	119.1	120.9
C2	N3	C10	134.4	132.0
C4	N3	C10	106.5	107.1
N3	C4	C5	120.5	119.9
N3	C4	N12	109.0	108.8
N3	C10	C11	105.1	106.2
N3	C10	C13	133.4	126.9
C5	C4	N12	130.5	131.3
C4	C5	C6	119.3	119.7
C4	C5	H5	119.1	120.1
C4	N12	C11	108.2	110.0
C6	C5	H5	121.6	120.1
C5	C6	H6	119.3	120.4
C11	C10	C13	121.5	126.9
C10	C11	N12	111.2	107.9
C10	C11	N35	125.5	126.1
C10	C13	C14	125.4	120.0
C10	C13	O34	117.0	120.0
N12	C11	N35	123.2	126.0
C11	N35	H351	106.6	120.0
C11	N35	H352	125.5	120.0
C14	C13	O34	117.6	120.0
C13	C14	C15	119.9	120.1
C13	C14	C19	120.4	120.2
C15	C14	C19	119.7	119.7
C14	C15	C16	120.1	119.8
C14	C15	H15	120.0	120.1
C14	C19	C18	119.7	119.9
C14	C19	H19	120.2	120.1
C16	C15	H15	119.9	120.1
C15	C16	C17	119.5	120.2
C15	C16	H16	120.8	119.9
C17	C16	H16	119.7	119.9
C16	C17	C18	120.5	120.3
C16	C17	H17	119.7	119.9
C18	C17	H17	119.8	119.9
C17	C18	C19	120.5	120.1
C17	C18	H18	119.5	120.0
C19	C18	H18	120.0	119.9
C18	C19	H19	120.2	120.1
C24	C23	O33	120.7	120.0
C23	C24	C25	119.4	120.2
C23	C24	C29	125.2	120.2
C25	C24	C29	115.5	119.6
C24	C25	C26	122.9	119.8
C24	C25	F36	120.6	120.1
C24	C29	C28	122.1	119.8
C24	C29	F39	122.5	120.1
C26	C25	F36	116.5	120.1
C25	C26	C27	119.7	120.2
C25	C26	H26	120.2	119.9
C27	C26	H26	120.0	119.9
C26	C27	C28	120.3	120.4
C26	C27	H27	119.9	119.8
C28	C27	H27	119.7	119.8
C27	C28	C29	119.4	120.2
C27	C28	H28	120.1	119.9
C29	C28	H28	120.5	119.9
C28	C29	F39	115.4	120.1
H351	N35	H352	106.6	120.0

Torsion Angles for PM1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C23	179.6	179.9
C2	C1	C6	C5	1.0	0.1
C2	C1	C6	H6	181.0	180.0
C2	C1	C23	C24	359.4	185.1
C2	C1	C23	O33	179.6	5.1
N3	C2	C1	H2	180.0	180.0
C1	C2	N3	C4	1.4	0.1
C1	C2	N3	C10	178.9	180.4
C2	C1	C6	C23	180.4	180.1
C6	C1	C2	N3	358.9	359.9
C6	C1	C2	H2	178.9	179.9
C6	C1	C23	C24	179.8	5.2
C6	C1	C23	O33	0.0	185.2
C4	C5	C6	C1	358.7	359.9
C1	C6	C5	H5	178.7	180.0
C5	C6	C1	H6	180.0	180.1
C2	C1	C23	C6	179.6	179.9
C23	C1	C2	N3	179.3	180.0
C23	C1	C2	H2	359.3	0.1
C23	C1	C6	C5	180.6	180.0
C23	C1	C6	H6	0.6	359.9
C24	C23	C1	O33	179.8	180.0
C1	C23	C24	C25	248.5	274.1
C1	C23	C24	C29	69.6	94.4
N3	C2	C1	C6	358.9	359.9
N3	C2	C1	C23	179.3	180.0
C1	C2	N3	H2	180.0	180.0
C4	N3	C2	C10	182.5	179.7
C2	N3	C4	C5	358.3	360.0
C2	N3	C4	N12	179.8	180.0
C2	N3	C10	C11	180.2	180.1
C2	N3	C10	C13	2.5	0.0
H2	C2	C1	C6	178.9	179.9
H2	C2	C1	C23	359.3	0.1
C1	C2	H2	N3	180.0	180.0
H2	C2	N3	C4	181.5	180.1
H2	C2	N3	C10	358.9	0.4
C4	N3	C2	H2	181.5	180.1
C2	N3	C4	C10	178.1	180.2
C4	N3	C10	C11	357.9	0.4
C4	N3	C10	C13	180.2	180.3
C5	C4	N3	N12	178.5	179.9
N3	C4	C5	C6	1.6	0.0
N3	C4	C5	H5	181.6	180.0
N3	C4	N12	C11	359.5	360.0
C10	N3	C2	H2	358.9	0.4
C2	N3	C10	C4	182.3	179.7
C10	N3	C4	C5	180.2	179.7
C10	N3	C4	N12	1.7	359.8
C11	C10	N3	C13	177.7	180.1
N3	C10	C11	N12	1.9	359.6
N3	C10	C11	N35	180.7	179.9
N3	C10	C13	C14	357.9	94.7
N3	C10	C13	O34	179.3	274.6
C1	C6	C5	C4	358.7	359.9
C5	C4	N3	C10	180.2	179.7
N3	C4	C5	N12	181.8	180.1
C5	C4	N12	C11	181.1	180.0
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	H6	178.7	180.0
N12	C4	N3	C10	1.7	359.8
N3	C4	N12	C5	178.3	179.9
N12	C4	C5	C6	179.7	180.0
N12	C4	C5	H5	359.7	359.9
C10	C11	N12	C4	359.1	0.3
C4	N12	C11	N35	180.3	180.0
C5	C6	C1	C23	180.6	180.0
C1	C6	C5	H6	180.0	179.9
C6	C5	C4	N12	179.7	180.0
C4	C5	C6	H5	180.0	180.0
H5	C5	C4	N12	359.7	359.9
C4	C5	H5	C6	180.0	180.1
H5	C5	C6	H6	358.7	0.0
H6	C6	C1	C23	0.6	359.9
C1	C6	H6	C5	180.0	180.1
H6	C6	C5	H5	358.7	0.0
N3	C10	C11	C13	182.0	179.9
C4	N12	C11	C10	359.1	0.3
C11	C10	C13	C14	180.5	274.6
C11	C10	C13	O34	2.0	94.5
N12	C11	C10	N35	181.3	179.7
C10	C11	N35	H351	54.7	174.6
C10	C11	N35	H352	180.0	354.4
N3	C10	C13	C11	177.4	180.1
C13	C10	C11	N12	180.0	179.7
C13	C10	C11	N35	358.7	360.0
C14	C13	C10	O34	178.5	180.1
C10	C13	C14	C15	81.5	174.4
C10	C13	C14	C19	261.7	354.1
N12	C11	C10	C13	180.0	179.7
C10	C11	N12	N35	178.8	180.3
N12	C11	N35	H351	233.3	355.0
N12	C11	N35	H352	358.6	174.7
N35	C11	C10	C13	358.7	360.0
C10	C11	N35	N12	181.4	179.6
H351	N35	C11	H352	234.7	180.3
C10	C13	C14	O34	181.5	179.9
C15	C14	C13	C19	179.9	180.3
C13	C14	C15	C16	179.9	179.9
C13	C14	C15	H15	359.9	360.0
C13	C14	C19	C18	180.1	179.7
C13	C14	C19	H19	0.1	0.4
C10	C13	O34	C14	178.6	180.1
O34	C13	C14	C15	260.0	354.5
O34	C13	C14	C19	80.2	174.2
C15	C14	C13	O34	260.0	354.5
C13	C14	C15	C19	180.1	179.7
C15	C14	C19	C18	0.2	359.4
C15	C14	C19	H19	180.2	180.0
C16	C15	C14	H15	180.0	180.0
C14	C15	C16	C17	359.9	360.0
C14	C15	C16	H16	179.9	180.0
C19	C14	C13	O34	80.2	174.2
C13	C14	C19	C15	179.9	180.3
C19	C14	C15	C16	359.8	0.3
C19	C14	C15	H15	179.8	180.3
C17	C18	C19	C14	0.1	0.6
C14	C19	C18	H18	180.1	180.3
C18	C19	C14	H19	180.0	179.4
C16	C15	C14	C19	359.8	0.3
C14	C15	C16	H15	180.0	180.0
C17	C16	C15	H16	180.0	180.0
C15	C16	C17	C18	0.4	0.1
C15	C16	C17	H17	180.4	180.0
H15	C15	C14	C19	179.8	180.3
C14	C15	H15	C16	180.0	180.0
H15	C15	C16	C17	179.9	180.0
H15	C15	C16	H16	359.9	360.0
C17	C16	C15	H15	179.9	180.0
C15	C16	C17	H16	180.0	180.0
C18	C17	C16	H17	180.0	180.1
C16	C17	C18	C19	359.6	359.6
C16	C17	C18	H18	179.6	180.0
H16	C16	C15	H15	359.9	360.0
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	180.4	180.1
H16	C16	C17	H17	0.4	360.0
C14	C19	C18	C17	0.1	0.6
C18	C17	C16	H16	180.4	180.1
C16	C17	C18	H17	180.0	179.9
C19	C18	C17	H18	180.0	179.6
C17	C18	C19	H19	180.1	180.0
H17	C17	C16	H16	0.4	360.0
C16	C17	H17	C18	180.0	180.1
H17	C17	C18	C19	179.6	179.7
H17	C17	C18	H18	359.6	0.1
C14	C19	C18	H19	180.0	180.6
C19	C18	C17	H17	179.6	179.7
C17	C18	C19	H18	180.0	180.4
H18	C18	C17	H17	359.6	0.1
C17	C18	H18	C19	180.0	179.6
H18	C18	C19	H19	0.1	359.7
C14	C19	H19	C18	180.0	179.4
H19	C19	C18	H18	0.1	359.7
C1	C23	C24	O33	180.2	180.0
C25	C24	C23	C29	179.0	179.7
C23	C24	C25	C26	180.1	179.8
C23	C24	C25	F36	0.9	0.3
C23	C24	C29	C28	179.9	180.0
C23	C24	C29	F39	358.7	360.0
C1	C23	O33	C24	179.8	180.0
O33	C23	C24	C25	68.3	94.1
O33	C23	C24	C29	249.4	274.4
C25	C24	C23	O33	68.3	94.1
C23	C24	C25	C29	180.9	180.3
C25	C24	C29	C28	0.9	0.2
C25	C24	C29	F39	179.7	180.3
C26	C25	C24	F36	179.3	179.5
C24	C25	C26	C27	0.7	0.5
C24	C25	C26	H26	180.7	180.3
C29	C24	C23	O33	249.4	274.4
C23	C24	C29	C25	179.0	179.7
C29	C24	C25	C26	359.2	359.5
C29	C24	C25	F36	179.9	180.0
C27	C28	C29	C24	359.1	0.0
C24	C29	C28	H28	179.1	179.9
C28	C29	C24	F39	181.2	180.0
C26	C25	C24	C29	359.2	359.5
C24	C25	C26	F36	180.7	180.5
C27	C26	C25	H26	180.0	180.2
C25	C26	C27	C28	359.4	359.8
C25	C26	C27	H27	179.4	179.8
F36	C25	C24	C29	179.9	180.0
C24	C25	F36	C26	179.3	179.5
F36	C25	C26	C27	180.0	180.0
F36	C25	C26	H26	0.0	359.8
C27	C26	C25	F36	180.0	180.0
C25	C26	C27	H26	180.0	179.8
C28	C27	C26	H27	180.0	180.0
C26	C27	C28	C29	0.7	360.0
C26	C27	C28	H28	180.7	180.1
H26	C26	C25	F36	0.0	359.8
C25	C26	H26	C27	180.0	180.2
H26	C26	C27	C28	179.4	180.0
H26	C26	C27	H27	359.4	0.0
C24	C29	C28	C27	359.1	0.0
C28	C27	C26	H26	179.4	180.0
C26	C27	C28	H27	180.0	180.0
C29	C28	C27	H28	180.0	179.9
C27	C28	C29	F39	180.2	180.0
H27	C27	C26	H26	359.4	0.0
C26	C27	H27	C28	180.0	180.0
H27	C27	C28	C29	180.8	179.9
H27	C27	C28	H28	0.7	0.0
C24	C29	C28	F39	178.9	180.0
C29	C28	C27	H27	180.8	179.9
C27	C28	C29	H28	180.0	180.1
H28	C28	C27	H27	0.7	0.0
C27	C28	H28	C29	180.0	179.9
H28	C28	C29	F39	0.2	359.9
C24	C29	F39	C28	181.1	180.0
F39	C29	C28	H28	0.2	359.9
C11	N35	H351	H352	136.1	179.7
C11	N35	H352	H351	234.7	180.3