PDB Chemical Component PLW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PLW
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O |
C |
1.226 |
1.209 |
C |
C1 |
1.515 |
1.507 |
C |
OXT |
1.350 |
1.341 |
C1 |
C2 |
1.525 |
1.530 |
C1 |
N3 |
1.480 |
1.465 |
N3 |
C4 |
1.323 |
1.353 |
N3 |
N1 |
1.398 |
1.288 |
C4 |
C3 |
1.389 |
1.353 |
C4 |
CA |
1.479 |
1.508 |
C3 |
N2 |
1.360 |
1.338 |
N2 |
N1 |
1.412 |
1.286 |
CA |
N |
1.459 |
1.469 |
CA |
C6 |
1.527 |
1.531 |
C6 |
C7 |
1.524 |
1.531 |
C6 |
C8 |
1.523 |
1.530 |
C8 |
C9 |
1.512 |
1.530 |
C1 |
H1 |
1.100 |
1.090 |
OXT |
HXT |
0.950 |
0.967 |
C2 |
H21C |
1.100 |
1.089 |
C2 |
H22C |
1.100 |
1.090 |
C2 |
H23C |
1.100 |
1.090 |
C3 |
H3 |
1.080 |
1.080 |
CA |
HA |
1.100 |
1.090 |
N |
H |
0.999 |
1.009 |
N |
H2 |
1.000 |
1.009 |
C6 |
H6 |
1.100 |
1.090 |
C7 |
H71C |
1.100 |
1.090 |
C7 |
H72C |
1.101 |
1.090 |
C7 |
H73C |
1.100 |
1.090 |
C8 |
H81C |
1.100 |
1.090 |
C8 |
H82C |
1.100 |
1.090 |
C9 |
H91C |
1.100 |
1.090 |
C9 |
H92C |
1.100 |
1.090 |
C9 |
H93C |
1.100 |
1.090 |
Bond Angles for PLW
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O |
C |
C1 |
119.3 |
120.0 |
O |
C |
OXT |
121.0 |
120.0 |
C1 |
C |
OXT |
119.6 |
120.0 |
C |
C1 |
C2 |
110.9 |
109.4 |
C |
C1 |
N3 |
107.1 |
109.5 |
C |
C1 |
H1 |
109.5 |
109.5 |
C |
OXT |
HXT |
109.5 |
117.0 |
C2 |
C1 |
N3 |
109.7 |
109.5 |
C2 |
C1 |
H1 |
109.4 |
109.5 |
C1 |
C2 |
H21C |
109.5 |
109.5 |
C1 |
C2 |
H22C |
109.5 |
109.5 |
C1 |
C2 |
H23C |
109.5 |
109.4 |
C1 |
N3 |
C4 |
132.9 |
125.9 |
C1 |
N3 |
N1 |
117.5 |
125.9 |
N3 |
C1 |
H1 |
110.0 |
109.5 |
C4 |
N3 |
N1 |
109.6 |
108.2 |
N3 |
C4 |
C3 |
109.8 |
106.2 |
N3 |
C4 |
CA |
132.2 |
126.9 |
N3 |
N1 |
N2 |
104.7 |
110.2 |
C3 |
C4 |
CA |
118.0 |
126.9 |
C4 |
C3 |
N2 |
106.5 |
106.5 |
C4 |
C3 |
H3 |
126.8 |
126.8 |
C4 |
CA |
N |
108.3 |
109.5 |
C4 |
CA |
C6 |
109.9 |
109.4 |
C4 |
CA |
HA |
108.6 |
109.5 |
C3 |
N2 |
N1 |
109.4 |
108.9 |
N2 |
C3 |
H3 |
126.8 |
126.7 |
N |
CA |
C6 |
113.1 |
109.4 |
N |
CA |
HA |
108.9 |
109.5 |
CA |
N |
H |
109.5 |
111.0 |
CA |
N |
H2 |
109.5 |
111.0 |
CA |
C6 |
C7 |
110.0 |
109.4 |
CA |
C6 |
C8 |
111.8 |
109.5 |
C6 |
CA |
HA |
108.0 |
109.5 |
CA |
C6 |
H6 |
108.4 |
109.5 |
C7 |
C6 |
C8 |
109.9 |
109.5 |
C7 |
C6 |
H6 |
108.4 |
109.5 |
C6 |
C7 |
H71C |
109.5 |
109.4 |
C6 |
C7 |
H72C |
109.5 |
109.5 |
C6 |
C7 |
H73C |
109.5 |
109.5 |
C6 |
C8 |
C9 |
110.0 |
109.5 |
C8 |
C6 |
H6 |
108.4 |
109.5 |
C6 |
C8 |
H81C |
109.4 |
109.5 |
C6 |
C8 |
H82C |
109.3 |
109.5 |
C9 |
C8 |
H81C |
109.3 |
109.4 |
C9 |
C8 |
H82C |
109.3 |
109.5 |
C8 |
C9 |
H91C |
109.5 |
109.4 |
C8 |
C9 |
H92C |
109.5 |
109.5 |
C8 |
C9 |
H93C |
109.5 |
109.5 |
H21C |
C2 |
H22C |
109.5 |
109.5 |
H21C |
C2 |
H23C |
109.5 |
109.5 |
H22C |
C2 |
H23C |
109.4 |
109.5 |
H |
N |
H2 |
109.5 |
111.0 |
H71C |
C7 |
H72C |
109.5 |
109.5 |
H71C |
C7 |
H73C |
109.4 |
109.5 |
H72C |
C7 |
H73C |
109.5 |
109.5 |
H81C |
C8 |
H82C |
109.5 |
109.5 |
H91C |
C9 |
H92C |
109.5 |
109.5 |
H91C |
C9 |
H93C |
109.5 |
109.5 |
H92C |
C9 |
H93C |
109.5 |
109.5 |
Torsion Angles for PLW
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
C |
O |
OXT |
178.6 |
180.2 |
O |
C |
C1 |
C2 |
88.0 |
120.0 |
O |
C |
C1 |
N3 |
328.3 |
0.1 |
O |
C |
C1 |
H1 |
208.9 |
240.1 |
O |
C |
OXT |
HXT |
0.0 |
359.9 |
O |
C |
C1 |
OXT |
181.3 |
179.8 |
C1 |
C |
OXT |
HXT |
181.4 |
179.7 |
C2 |
C1 |
C |
N3 |
119.7 |
120.0 |
C2 |
C1 |
C |
H1 |
239.1 |
240.0 |
C |
C1 |
C2 |
H21C |
180.0 |
300.0 |
C |
C1 |
C2 |
H22C |
300.0 |
60.0 |
C |
C1 |
C2 |
H23C |
60.0 |
180.0 |
C |
C1 |
N3 |
C4 |
273.5 |
240.0 |
C |
C1 |
N3 |
N1 |
91.9 |
59.7 |
N3 |
C1 |
C |
H1 |
119.4 |
120.0 |
O |
C |
OXT |
C1 |
178.6 |
180.2 |
OXT |
C |
C1 |
C2 |
266.7 |
300.2 |
OXT |
C |
C1 |
N3 |
146.9 |
180.2 |
OXT |
C |
C1 |
H1 |
27.6 |
60.2 |
C2 |
C1 |
C |
OXT |
266.7 |
300.2 |
C |
C1 |
C2 |
N3 |
241.8 |
240.0 |
C |
C1 |
C2 |
H1 |
121.0 |
120.0 |
C2 |
C1 |
N3 |
C4 |
153.0 |
120.0 |
C2 |
C1 |
N3 |
N1 |
331.4 |
299.7 |
N3 |
C1 |
C2 |
H1 |
239.2 |
240.0 |
H21C |
C2 |
C1 |
H22C |
240.0 |
240.0 |
H21C |
C2 |
C1 |
H23C |
120.1 |
120.0 |
H22C |
C2 |
C1 |
H23C |
240.1 |
240.0 |
N3 |
C1 |
C |
OXT |
146.9 |
180.2 |
C |
C1 |
N3 |
C2 |
120.5 |
120.0 |
C |
C1 |
N3 |
H1 |
241.0 |
240.0 |
C2 |
C1 |
N3 |
H1 |
120.5 |
120.0 |
N3 |
C1 |
C2 |
H21C |
298.2 |
60.0 |
N3 |
C1 |
C2 |
H22C |
58.2 |
180.0 |
N3 |
C1 |
C2 |
H23C |
178.1 |
300.0 |
C4 |
N3 |
C1 |
N1 |
181.6 |
180.3 |
C1 |
N3 |
C4 |
C3 |
178.8 |
180.0 |
C1 |
N3 |
C4 |
CA |
358.9 |
360.0 |
C1 |
N3 |
N1 |
N2 |
181.0 |
179.8 |
C1 |
N3 |
C4 |
N1 |
178.5 |
179.7 |
C4 |
N3 |
C1 |
H1 |
32.6 |
360.0 |
C4 |
N3 |
N1 |
N2 |
359.8 |
359.6 |
C3 |
C4 |
N3 |
CA |
179.9 |
180.0 |
N3 |
C4 |
C3 |
N2 |
359.7 |
0.0 |
N3 |
C4 |
C3 |
H3 |
179.7 |
180.0 |
N3 |
C4 |
CA |
N |
103.0 |
145.0 |
N3 |
C4 |
CA |
C6 |
227.0 |
265.0 |
N3 |
C4 |
CA |
HA |
344.9 |
25.0 |
C1 |
N3 |
N1 |
C4 |
181.3 |
180.3 |
N1 |
N3 |
C1 |
H1 |
211.0 |
179.7 |
N1 |
N3 |
C4 |
C3 |
0.3 |
0.3 |
N1 |
N3 |
C4 |
CA |
180.4 |
180.3 |
C3 |
N2 |
N1 |
N3 |
0.0 |
0.5 |
C3 |
C4 |
N3 |
N1 |
0.3 |
0.3 |
N3 |
C4 |
C3 |
CA |
180.1 |
180.0 |
C3 |
C4 |
CA |
N |
283.1 |
325.0 |
C3 |
C4 |
CA |
C6 |
47.1 |
85.0 |
C3 |
C4 |
CA |
HA |
165.0 |
205.0 |
C4 |
C3 |
N2 |
N1 |
0.2 |
359.7 |
N2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
CA |
C4 |
N3 |
N1 |
180.4 |
180.3 |
N3 |
C4 |
CA |
C3 |
179.9 |
180.0 |
CA |
C4 |
C3 |
N2 |
179.6 |
180.0 |
CA |
C4 |
C3 |
H3 |
359.7 |
360.0 |
N |
CA |
C4 |
C6 |
236.0 |
240.0 |
N |
CA |
C4 |
HA |
118.1 |
120.0 |
C4 |
CA |
N |
H |
180.0 |
296.0 |
C4 |
CA |
N |
H2 |
300.0 |
59.9 |
C4 |
CA |
C6 |
C7 |
57.2 |
60.0 |
C4 |
CA |
C6 |
C8 |
179.5 |
180.0 |
C6 |
CA |
C4 |
HA |
242.1 |
240.0 |
C4 |
CA |
C6 |
H6 |
298.9 |
300.0 |
N3 |
N1 |
N2 |
C3 |
0.0 |
0.5 |
N2 |
C3 |
C4 |
CA |
179.6 |
180.0 |
C4 |
C3 |
N2 |
H3 |
180.0 |
179.9 |
N1 |
N2 |
C3 |
H3 |
180.1 |
179.8 |
C4 |
CA |
N |
C6 |
122.1 |
120.0 |
C4 |
CA |
N |
HA |
242.1 |
239.9 |
N |
CA |
C6 |
C7 |
178.4 |
180.0 |
N |
CA |
C6 |
C8 |
300.7 |
300.0 |
C6 |
CA |
N |
HA |
120.0 |
120.0 |
N |
CA |
C6 |
H6 |
60.1 |
60.0 |
H |
N |
CA |
H2 |
240.0 |
236.1 |
C4 |
CA |
C6 |
N |
238.8 |
240.0 |
C4 |
CA |
C6 |
HA |
118.3 |
120.0 |
N |
CA |
C6 |
HA |
239.5 |
240.0 |
C6 |
CA |
N |
H |
57.9 |
176.1 |
C6 |
CA |
N |
H2 |
177.9 |
300.0 |
C7 |
C6 |
CA |
C8 |
237.6 |
240.0 |
C7 |
C6 |
CA |
H6 |
118.3 |
120.0 |
CA |
C6 |
C7 |
H71C |
180.0 |
180.0 |
CA |
C6 |
C7 |
H72C |
300.0 |
300.0 |
CA |
C6 |
C7 |
H73C |
60.0 |
60.0 |
CA |
C6 |
C8 |
C9 |
317.1 |
175.0 |
C8 |
C6 |
CA |
H6 |
240.7 |
240.0 |
CA |
C6 |
C8 |
H81C |
77.2 |
295.0 |
CA |
C6 |
C8 |
H82C |
197.0 |
55.0 |
CA |
C6 |
C7 |
C8 |
123.5 |
120.0 |
C7 |
C6 |
CA |
HA |
298.9 |
300.0 |
CA |
C6 |
C7 |
H6 |
241.7 |
240.0 |
C7 |
C6 |
C8 |
C9 |
79.5 |
295.0 |
C8 |
C6 |
C7 |
H6 |
118.3 |
120.0 |
C7 |
C6 |
C8 |
H81C |
199.6 |
54.9 |
C7 |
C6 |
C8 |
H82C |
319.4 |
175.0 |
H71C |
C7 |
C6 |
H72C |
240.0 |
240.0 |
H71C |
C7 |
C6 |
H73C |
120.0 |
120.0 |
H72C |
C7 |
C6 |
H73C |
240.0 |
240.0 |
CA |
C6 |
C8 |
C7 |
237.6 |
240.0 |
C8 |
C6 |
CA |
HA |
61.2 |
60.0 |
CA |
C6 |
C8 |
H6 |
119.3 |
120.0 |
C7 |
C6 |
C8 |
H6 |
241.7 |
240.0 |
C8 |
C6 |
C7 |
H71C |
56.5 |
60.0 |
C8 |
C6 |
C7 |
H72C |
176.6 |
180.0 |
C8 |
C6 |
C7 |
H73C |
296.6 |
300.0 |
C9 |
C8 |
C6 |
H81C |
239.9 |
240.0 |
C9 |
C8 |
C6 |
H82C |
120.1 |
120.0 |
C6 |
C8 |
C9 |
H91C |
180.0 |
300.0 |
C6 |
C8 |
C9 |
H92C |
300.0 |
60.0 |
C6 |
C8 |
C9 |
H93C |
60.0 |
180.0 |
H81C |
C8 |
C6 |
H82C |
240.2 |
240.0 |
C9 |
C8 |
C6 |
H6 |
197.7 |
55.0 |
C6 |
C8 |
C9 |
H81C |
120.1 |
120.0 |
C6 |
C8 |
C9 |
H82C |
239.9 |
240.0 |
H81C |
C8 |
C9 |
H82C |
119.8 |
120.0 |
H91C |
C9 |
C8 |
H92C |
240.0 |
240.0 |
H91C |
C9 |
C8 |
H93C |
120.0 |
120.0 |
H92C |
C9 |
C8 |
H93C |
240.0 |
240.0 |
H1 |
C1 |
C |
OXT |
27.6 |
60.2 |
C |
C1 |
H1 |
C2 |
238.2 |
240.0 |
C |
C1 |
H1 |
N3 |
117.6 |
120.0 |
C2 |
C1 |
H1 |
N3 |
239.4 |
240.0 |
H1 |
C1 |
C2 |
H21C |
59.0 |
180.0 |
H1 |
C1 |
C2 |
H22C |
179.0 |
300.0 |
H1 |
C1 |
C2 |
H23C |
299.0 |
60.0 |
H1 |
C1 |
N3 |
C4 |
32.6 |
360.0 |
H1 |
C1 |
N3 |
N1 |
211.0 |
179.7 |
H21C |
C2 |
C1 |
N3 |
298.2 |
60.0 |
H21C |
C2 |
C1 |
H1 |
59.0 |
180.0 |
C1 |
C2 |
H21C |
H22C |
120.0 |
120.0 |
C1 |
C2 |
H21C |
H23C |
240.0 |
240.0 |
H22C |
C2 |
H21C |
H23C |
120.0 |
120.0 |
H22C |
C2 |
C1 |
N3 |
58.2 |
180.0 |
H22C |
C2 |
C1 |
H1 |
179.0 |
300.0 |
C1 |
C2 |
H22C |
H21C |
240.0 |
240.0 |
C1 |
C2 |
H22C |
H23C |
120.0 |
119.9 |
H21C |
C2 |
H22C |
H23C |
240.0 |
239.9 |
H23C |
C2 |
C1 |
N3 |
178.1 |
300.0 |
H23C |
C2 |
C1 |
H1 |
299.0 |
60.0 |
C1 |
C2 |
H23C |
H21C |
120.1 |
120.0 |
C1 |
C2 |
H23C |
H22C |
240.0 |
240.0 |
H21C |
C2 |
H23C |
H22C |
120.0 |
120.0 |
H3 |
C3 |
C4 |
CA |
359.7 |
360.0 |
C4 |
C3 |
H3 |
N2 |
180.0 |
180.1 |
H3 |
C3 |
N2 |
N1 |
180.1 |
179.8 |
C4 |
CA |
HA |
N |
117.8 |
120.1 |
C4 |
CA |
HA |
C6 |
240.9 |
240.0 |
N |
CA |
HA |
C6 |
123.1 |
120.0 |
HA |
CA |
N |
H |
297.9 |
56.1 |
HA |
CA |
N |
H2 |
57.9 |
180.0 |
HA |
CA |
C6 |
C7 |
298.9 |
300.0 |
HA |
CA |
C6 |
C8 |
61.2 |
60.0 |
HA |
CA |
C6 |
H6 |
180.6 |
180.0 |
H |
N |
CA |
C6 |
57.9 |
176.1 |
H |
N |
CA |
HA |
297.9 |
56.1 |
CA |
N |
H |
H2 |
120.0 |
123.9 |
H2 |
N |
CA |
C6 |
177.9 |
300.0 |
H2 |
N |
CA |
HA |
57.9 |
180.0 |
CA |
N |
H2 |
H |
240.0 |
236.1 |
CA |
C6 |
H6 |
C7 |
119.3 |
120.0 |
CA |
C6 |
H6 |
C8 |
238.6 |
240.0 |
H6 |
C6 |
CA |
HA |
180.6 |
180.0 |
C7 |
C6 |
H6 |
C8 |
119.2 |
120.0 |
H6 |
C6 |
C7 |
H71C |
298.3 |
300.0 |
H6 |
C6 |
C7 |
H72C |
58.3 |
60.0 |
H6 |
C6 |
C7 |
H73C |
178.3 |
180.0 |
H6 |
C6 |
C8 |
C9 |
197.7 |
55.0 |
H6 |
C6 |
C8 |
H81C |
317.8 |
175.0 |
H6 |
C6 |
C8 |
H82C |
77.7 |
295.0 |
H71C |
C7 |
C6 |
C8 |
56.5 |
60.0 |
H71C |
C7 |
C6 |
H6 |
298.3 |
300.0 |
C6 |
C7 |
H71C |
H72C |
120.0 |
120.0 |
C6 |
C7 |
H71C |
H73C |
240.0 |
240.0 |
H72C |
C7 |
H71C |
H73C |
120.0 |
120.0 |
H72C |
C7 |
C6 |
C8 |
176.6 |
180.0 |
H72C |
C7 |
C6 |
H6 |
58.3 |
60.0 |
C6 |
C7 |
H72C |
H71C |
239.9 |
240.0 |
C6 |
C7 |
H72C |
H73C |
120.0 |
120.0 |
H71C |
C7 |
H72C |
H73C |
240.1 |
240.0 |
H73C |
C7 |
C6 |
C8 |
296.6 |
300.0 |
H73C |
C7 |
C6 |
H6 |
178.3 |
180.0 |
C6 |
C7 |
H73C |
H71C |
120.0 |
120.0 |
C6 |
C7 |
H73C |
H72C |
240.0 |
240.0 |
H71C |
C7 |
H73C |
H72C |
120.0 |
120.0 |
C6 |
C8 |
H81C |
C9 |
239.5 |
240.0 |
H81C |
C8 |
C6 |
H6 |
317.8 |
175.0 |
C6 |
C8 |
H81C |
H82C |
119.8 |
120.0 |
C9 |
C8 |
H81C |
H82C |
240.2 |
240.0 |
H81C |
C8 |
C9 |
H91C |
59.9 |
180.0 |
H81C |
C8 |
C9 |
H92C |
179.9 |
300.0 |
H81C |
C8 |
C9 |
H93C |
299.9 |
60.0 |
C6 |
C8 |
H82C |
C9 |
120.5 |
120.0 |
H82C |
C8 |
C6 |
H6 |
77.7 |
295.0 |
C6 |
C8 |
H82C |
H81C |
240.2 |
240.0 |
C9 |
C8 |
H82C |
H81C |
119.8 |
120.0 |
H82C |
C8 |
C9 |
H91C |
300.1 |
60.0 |
H82C |
C8 |
C9 |
H92C |
60.1 |
180.0 |
H82C |
C8 |
C9 |
H93C |
180.1 |
300.0 |
H91C |
C9 |
C8 |
H81C |
59.9 |
180.0 |
H91C |
C9 |
C8 |
H82C |
300.1 |
60.0 |
C8 |
C9 |
H91C |
H92C |
120.0 |
120.0 |
C8 |
C9 |
H91C |
H93C |
240.0 |
240.0 |
H92C |
C9 |
H91C |
H93C |
120.0 |
120.0 |
H92C |
C9 |
C8 |
H81C |
179.9 |
300.0 |
H92C |
C9 |
C8 |
H82C |
60.1 |
180.0 |
C8 |
C9 |
H92C |
H91C |
240.0 |
240.0 |
C8 |
C9 |
H92C |
H93C |
120.0 |
120.0 |
H91C |
C9 |
H92C |
H93C |
240.0 |
240.0 |
H93C |
C9 |
C8 |
H81C |
299.9 |
60.0 |
H93C |
C9 |
C8 |
H82C |
180.1 |
300.0 |
C8 |
C9 |
H93C |
H91C |
120.0 |
120.0 |
C8 |
C9 |
H93C |
H92C |
240.0 |
240.0 |
H91C |
C9 |
H93C |
H92C |
120.0 |
120.0 |