PDB Chemical Component PLK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PLK

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C11	C12	1.562	1.530
C12	C13	1.538	1.530
C12	C14	1.514	1.530
C14	C15	1.563	1.530
C15	C16	1.561	1.530
C15	N11	1.551	1.469
C16	C17	1.555	1.507
C17	O11	1.282	1.342
C17	O12	1.260	1.208
N11	C21	1.492	1.469
C21	C22	1.578	1.507
C22	C23	1.410	1.390
C22	C27	1.403	1.385
C23	O21	1.363	1.359
C23	C24	1.398	1.387
C24	C25	1.515	1.508
C24	N21	1.342	1.318
N21	C26	1.352	1.318
C26	C27	1.405	1.383
C27	C28	1.547	1.507
C28	O22	1.459	1.430
O22	P	1.639	1.609
P	O1P	1.569	1.610
P	O2P	1.574	1.610
P	O3P	1.485	1.480
C11	H111	1.100	1.090
C11	H112	1.100	1.090
C11	H113	1.100	1.090
C12	H12	1.100	1.091
C13	H131	1.100	1.090
C13	H132	1.100	1.090
C13	H133	1.100	1.091
C14	H141	1.100	1.091
C14	H142	1.100	1.090
C15	H15	1.099	1.090
C16	H161	1.100	1.090
C16	H162	1.100	1.090
N11	H11	1.000	1.009
O11	HA	0.950	0.968
C21	H211	1.100	1.090
C21	H212	1.100	1.090
O21	H21	0.950	0.967
C25	H251	1.100	1.090
C25	H252	1.100	1.090
C25	H253	1.100	1.090
C26	H26	1.080	1.080
C28	H281	1.100	1.090
C28	H282	1.100	1.090
O1P	H1P	0.950	0.967
O2P	H2P	0.950	0.967

Bond Angles for PLK

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C11	C12	C13	113.4	109.5
C11	C12	C14	109.5	109.5
C12	C11	H111	109.5	109.5
C12	C11	H112	109.5	109.4
C12	C11	H113	109.5	109.5
C11	C12	H12	107.5	109.4
C13	C12	C14	111.6	109.5
C13	C12	H12	105.2	109.4
C12	C13	H131	109.5	109.4
C12	C13	H132	109.5	109.5
C12	C13	H133	109.5	109.5
C12	C14	C15	115.1	109.5
C14	C12	H12	109.4	109.5
C12	C14	H141	107.6	109.5
C12	C14	H142	107.7	109.5
C14	C15	C16	98.3	109.5
C14	C15	N11	114.0	109.5
C15	C14	H141	107.7	109.5
C15	C14	H142	107.6	109.4
C14	C15	H15	117.2	109.4
C16	C15	N11	117.8	109.5
C15	C16	C17	112.2	109.5
C16	C15	H15	113.3	109.5
C15	C16	H161	108.6	109.5
C15	C16	H162	108.6	109.5
C15	N11	C21	118.5	111.0
N11	C15	H15	97.4	109.5
C15	N11	H11	106.5	111.0
C16	C17	O11	118.9	120.0
C16	C17	O12	115.2	120.0
C17	C16	H161	108.6	109.5
C17	C16	H162	108.5	109.4
O11	C17	O12	125.6	120.0
C17	O11	HA	109.5	117.0
N11	C21	C22	118.9	109.5
C21	N11	H11	106.6	111.0
N11	C21	H211	106.4	109.5
N11	C21	H212	106.4	109.4
C21	C22	C23	124.9	120.8
C21	C22	C27	119.7	120.8
C22	C21	H211	106.4	109.5
C22	C21	H212	106.4	109.5
C23	C22	C27	115.4	118.4
C22	C23	O21	120.6	120.5
C22	C23	C24	121.6	119.1
C22	C27	C26	120.8	119.2
C22	C27	C28	122.2	120.4
O21	C23	C24	117.8	120.5
C23	O21	H21	109.5	114.1
C23	C24	C25	119.8	119.6
C23	C24	N21	121.2	120.7
C25	C24	N21	119.0	119.7
C24	C25	H251	109.5	109.5
C24	C25	H252	109.5	109.4
C24	C25	H253	109.5	109.5
C24	N21	C26	119.3	121.8
N21	C26	C27	121.6	120.9
N21	C26	H26	119.2	119.5
C26	C27	C28	117.0	120.4
C27	C26	H26	119.2	119.6
C27	C28	O22	109.3	109.5
C27	C28	H281	109.5	109.5
C27	C28	H282	109.5	109.4
C28	O22	P	119.0	123.0
O22	C28	H281	109.6	109.5
O22	C28	H282	109.5	109.5
O22	P	O1P	107.6	109.5
O22	P	O2P	102.0	109.5
O22	P	O3P	110.2	109.4
O1P	P	O2P	103.9	109.5
O1P	P	O3P	119.4	109.5
P	O1P	H1P	109.5	113.9
O2P	P	O3P	112.3	109.5
P	O2P	H2P	109.5	113.9
H111	C11	H112	109.4	109.5
H111	C11	H113	109.5	109.5
H112	C11	H113	109.5	109.4
H131	C13	H132	109.5	109.5
H131	C13	H133	109.5	109.4
H132	C13	H133	109.4	109.5
H141	C14	H142	111.2	109.5
H161	C16	H162	110.4	109.5
H211	C21	H212	112.3	109.5
H251	C25	H252	109.5	109.5
H251	C25	H253	109.5	109.4
H252	C25	H253	109.5	109.5
H281	C28	H282	109.4	109.4

Torsion Angles for PLK

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C13	C12	C11	C14	125.3	240.0
C13	C12	C11	H12	244.1	120.0
C11	C12	C13	H131	180.0	60.0
C11	C12	C13	H132	300.0	180.0
C11	C12	C13	H133	60.0	300.1
C11	C12	C14	C15	195.4	66.5
C14	C12	C11	H12	118.8	240.0
C11	C12	C14	H141	315.4	186.5
C11	C12	C14	H142	75.4	306.5
H111	C11	C12	H112	240.0	240.0
H111	C11	C12	H113	120.0	120.0
H112	C11	C12	H113	240.0	240.1
C11	C12	C13	C14	235.8	120.0
C13	C12	C11	H111	180.0	180.0
C13	C12	C11	H112	300.0	300.0
C13	C12	C11	H113	60.0	59.9
C11	C12	C13	H12	117.2	240.0
C13	C12	C14	C15	69.0	186.6
C14	C12	C13	H12	241.4	120.0
C13	C12	C14	H141	189.0	306.6
C13	C12	C14	H142	309.0	66.6
H131	C13	C12	H132	240.0	240.0
H131	C13	C12	H133	120.0	119.9
H132	C13	C12	H133	240.1	239.9
C11	C12	C14	C13	126.4	239.9
C14	C12	C11	H111	54.7	300.0
C14	C12	C11	H112	174.7	60.1
C14	C12	C11	H113	294.7	180.0
C11	C12	C14	H12	242.4	120.0
C13	C12	C14	H12	116.1	240.0
C14	C12	C13	H131	304.2	299.9
C14	C12	C13	H132	64.2	60.0
C14	C12	C13	H133	184.2	180.0
C12	C14	C15	C16	171.6	182.4
C12	C14	C15	N11	46.1	62.4
C15	C14	C12	H141	240.0	240.0
C15	C14	C12	H142	120.0	120.0
C12	C14	C15	H15	293.3	302.4
H141	C14	C12	H142	240.0	240.0
C15	C14	C12	H12	313.0	306.6
C12	C14	C15	H141	120.0	120.0
C12	C14	C15	H142	240.0	240.0
C16	C15	C14	N11	125.5	120.0
C14	C15	C16	C17	78.7	175.0
C16	C15	C14	H15	238.3	240.0
C14	C15	C16	H161	198.7	295.0
C14	C15	C16	H162	318.8	55.0
C14	C15	N11	C21	116.1	260.3
N11	C15	C14	H15	112.8	120.0
C14	C15	N11	H11	236.1	24.3
H141	C14	C15	H142	120.0	120.0
C14	C15	C16	N11	237.2	240.0
C16	C15	C14	H141	51.6	62.4
C16	C15	C14	H142	291.6	302.4
C14	C15	C16	H15	124.5	120.0
C16	C15	N11	C21	1.7	140.3
N11	C15	C16	H15	247.3	240.0
C16	C15	N11	H11	121.7	264.3
C15	C16	C17	O11	226.6	180.0
C15	C16	C17	O12	52.1	360.0
C17	C16	C15	H161	240.0	240.0
C17	C16	C15	H162	120.0	119.9
H161	C16	C15	H162	240.0	240.0
C14	C15	N11	C16	114.4	120.0
N11	C15	C14	H141	286.1	302.4
N11	C15	C14	H142	166.1	182.4
C14	C15	N11	H15	235.8	240.1
N11	C15	C16	C17	201.5	295.0
C16	C15	N11	H15	121.3	120.0
N11	C15	C16	H161	321.5	55.0
N11	C15	C16	H162	81.5	175.0
C15	N11	C21	C22	194.2	186.2
C21	N11	C15	H11	240.0	236.0
C15	N11	C21	H211	314.2	306.2
C15	N11	C21	H212	74.2	66.2
C17	C16	C15	N11	201.5	295.0
C17	C16	C15	H15	314.2	55.0
C15	C16	C17	H161	120.0	120.0
C15	C16	C17	H162	240.0	240.0
O11	C17	C16	O12	174.6	180.0
C16	C17	O11	HA	186.0	180.0
H161	C16	C17	H162	120.0	120.0
C16	C17	O11	O12	186.0	180.0
O11	C17	C16	H161	106.7	60.0
O11	C17	C16	H162	346.7	300.0
C16	C17	O12	O11	174.2	180.0
O12	C17	C16	H161	292.1	240.0
O12	C17	C16	H162	172.1	120.0
O12	C17	O11	HA	360.0	0.0
C21	N11	C15	H15	240.3	20.3
C15	N11	C21	H11	120.0	124.0
N11	C21	C22	C23	336.8	90.0
N11	C21	C22	C27	156.6	269.7
C22	C21	N11	H211	240.0	240.0
C22	C21	N11	H212	120.0	120.0
H211	C21	N11	H212	240.0	240.0
C22	C21	N11	H11	74.2	62.2
N11	C21	C22	H211	120.0	120.0
N11	C21	C22	H212	240.0	240.0
C23	C22	C21	C27	180.2	180.3
C21	C22	C23	O21	0.6	0.0
C21	C22	C23	C24	180.9	180.0
C21	C22	C27	C26	178.8	179.8
C21	C22	C27	C28	0.4	360.0
H211	C21	C22	H212	120.0	120.0
C21	C22	C23	C27	179.8	179.7
C23	C22	C21	H211	216.8	330.0
C23	C22	C21	H212	96.8	210.0
C23	C22	C27	C26	358.7	359.5
C23	C22	C27	C28	180.3	179.7
O21	C23	C22	C24	179.7	180.0
C22	C23	O21	H21	180.0	90.0
C22	C23	C24	C25	178.6	180.0
C22	C23	C24	N21	359.4	359.9
C21	C22	C27	C23	180.2	180.3
C27	C22	C21	H211	36.6	149.7
C27	C22	C21	H212	276.6	29.7
C27	C22	C23	O21	180.7	180.3
C27	C22	C23	C24	1.0	0.3
N21	C26	C27	C22	1.2	0.5
C26	C27	C22	C28	178.4	179.8
C22	C27	C26	H26	181.2	180.3
C22	C27	C28	O22	71.0	180.0
C22	C27	C28	H281	191.0	300.0
C22	C27	C28	H282	311.0	60.0
O21	C23	C22	C27	180.7	180.3
C22	C23	O21	C24	180.3	180.0
O21	C23	C24	C25	358.9	0.0
O21	C23	C24	N21	179.7	179.9
C24	C23	C22	C27	1.0	0.3
C22	C23	C24	O21	179.7	180.0
C24	C23	O21	H21	359.7	270.0
C25	C24	C23	N21	179.2	180.1
C23	C24	C25	H251	180.8	89.9
C23	C24	C25	H252	300.8	210.0
C23	C24	C25	H253	60.8	330.0
C23	C24	N21	C26	0.4	0.0
C23	C24	C25	N21	180.8	179.9
C25	C24	N21	C26	181.3	180.0
H251	C25	C24	H252	240.0	240.0
H251	C25	C24	H253	120.0	120.0
H252	C25	C24	H253	240.0	240.0
C23	C24	N21	C25	179.2	180.1
N21	C24	C25	H251	360.0	270.0
N21	C24	C25	H252	120.0	30.1
N21	C24	C25	H253	240.0	150.1
C24	N21	C26	C27	359.3	359.8
C24	N21	C26	H26	179.3	179.9
C22	C27	C26	N21	1.2	0.5
N21	C26	C27	C28	179.7	180.3
C27	C26	N21	H26	180.0	179.8
C22	C27	C26	C28	181.5	180.2
N21	C26	C27	H26	180.0	180.2
C26	C27	C28	O22	252.5	0.2
C26	C27	C28	H281	12.6	120.2
C26	C27	C28	H282	132.6	240.2
C22	C27	C28	C26	178.5	179.8
C28	C27	C26	H26	359.7	0.1
C27	C28	O22	P	204.2	180.0
O22	C28	C27	H281	240.0	240.0
O22	C28	C27	H282	120.0	120.0
H281	C28	C27	H282	240.0	240.1
C27	C28	O22	H281	120.0	120.0
C27	C28	O22	H282	240.0	240.0
C28	O22	P	O1P	312.5	175.0
C28	O22	P	O2P	61.4	295.1
C28	O22	P	O3P	180.8	55.0
H281	C28	O22	H282	120.0	120.0
P	O22	C28	H281	84.2	59.9
P	O22	C28	H282	324.2	300.0
O1P	P	O22	O2P	251.1	239.9
O1P	P	O22	O3P	131.7	120.0
O22	P	O1P	H1P	233.5	180.0
O2P	P	O22	O3P	240.6	240.0
O22	P	O2P	H2P	117.9	299.9
O22	P	O1P	O2P	107.6	120.1
O22	P	O1P	O3P	233.6	240.0
O2P	P	O1P	O3P	126.0	120.0
O1P	P	O2P	H2P	229.7	60.0
O22	P	O2P	O1P	248.2	240.0
O22	P	O2P	O3P	117.9	120.0
O1P	P	O2P	O3P	229.7	240.0
O2P	P	O1P	H1P	126.0	60.0
O22	P	O3P	O1P	125.2	120.0
O22	P	O3P	O2P	247.1	240.0
O1P	P	O3P	O2P	121.9	120.0
O3P	P	O1P	H1P	360.0	300.0
O3P	P	O2P	H2P	360.0	180.0
H111	C11	C12	C13	180.0	180.0
H111	C11	C12	C14	54.7	300.0
C12	C11	H111	H112	120.0	120.0
C12	C11	H111	H113	240.0	240.0
H111	C11	C12	H12	295.9	60.0
H112	C11	H111	H113	120.0	120.0
H112	C11	C12	C13	300.0	300.0
H112	C11	C12	C14	174.7	60.1
C12	C11	H112	H111	240.0	240.0
C12	C11	H112	H113	120.0	119.9
H112	C11	C12	H12	55.9	180.0
H111	C11	H112	H113	240.0	240.0
H113	C11	C12	C13	60.0	59.9
H113	C11	C12	C14	294.7	180.0
C12	C11	H113	H111	120.0	120.1
C12	C11	H113	H112	240.0	240.1
H113	C11	C12	H12	175.9	300.0
H111	C11	H113	H112	119.9	120.0
C11	C12	H12	C13	238.9	120.0
C11	C12	H12	C14	118.8	240.0
H12	C12	C11	H111	295.9	60.0
H12	C12	C11	H112	55.9	180.0
H12	C12	C11	H113	175.9	300.0
C13	C12	H12	C14	240.0	120.0
H12	C12	C13	H131	62.8	179.9
H12	C12	C13	H132	182.8	300.0
H12	C12	C13	H133	302.8	60.0
H12	C12	C14	C15	313.0	306.6
H12	C12	C14	H141	73.0	66.6
H12	C12	C14	H142	193.0	186.6
H131	C13	C12	C14	304.2	299.9
H131	C13	C12	H12	62.8	179.9
C12	C13	H131	H132	120.0	120.0
C12	C13	H131	H133	240.0	240.1
H132	C13	H131	H133	120.0	120.1
H132	C13	C12	C14	64.2	60.0
H132	C13	C12	H12	182.8	300.0
C12	C13	H132	H131	239.9	240.1
C12	C13	H132	H133	120.0	120.0
H131	C13	H132	H133	240.0	240.0
H133	C13	C12	C14	184.2	180.0
H133	C13	C12	H12	302.8	60.0
C12	C13	H133	H131	120.1	119.9
C12	C13	H133	H132	240.0	240.0
H131	C13	H133	H132	120.0	120.1
C12	C14	H141	C15	235.4	240.0
H141	C14	C12	H12	73.0	66.6
C12	C14	H141	H142	117.7	120.0
H141	C14	C15	C16	51.6	62.4
H141	C14	C15	N11	286.1	302.4
C15	C14	H141	H142	242.3	240.0
H141	C14	C15	H15	173.3	182.4
C12	C14	H142	C15	124.6	120.0
H142	C14	C12	H12	193.0	186.6
C12	C14	H142	H141	242.3	240.0
H142	C14	C15	C16	291.6	302.4
H142	C14	C15	N11	166.1	182.4
C15	C14	H142	H141	117.7	120.0
H142	C14	C15	H15	53.3	62.4
C14	C15	H15	C16	246.5	240.0
C14	C15	H15	N11	121.9	120.0
H15	C15	C14	H141	173.3	182.4
H15	C15	C14	H142	53.3	62.4
C16	C15	H15	N11	235.3	240.0
H15	C15	C16	C17	314.2	55.0
H15	C15	C16	H161	74.2	175.1
H15	C15	C16	H162	194.3	295.1
H15	C15	N11	C21	240.3	20.3
H15	C15	N11	H11	0.3	144.3
H161	C16	C15	N11	321.5	55.0
C15	C16	H161	C17	237.8	240.0
H161	C16	C15	H15	74.2	175.1
C15	C16	H161	H162	118.9	120.0
H161	C16	C17	O11	106.7	60.0
H161	C16	C17	O12	292.1	240.0
C17	C16	H161	H162	241.1	240.0
H162	C16	C15	N11	81.5	175.0
C15	C16	H162	C17	122.2	120.0
H162	C16	C15	H15	194.3	295.1
C15	C16	H162	H161	241.1	240.0
H162	C16	C17	O11	346.7	300.0
H162	C16	C17	O12	172.1	120.0
C17	C16	H162	H161	118.9	120.0
C15	N11	H11	C21	232.5	236.0
H11	N11	C15	H15	0.3	144.3
H11	N11	C21	C22	74.2	62.2
H11	N11	C21	H211	194.2	182.2
H11	N11	C21	H212	314.2	302.2
HA	O11	C17	O12	360.0	0.0
N11	C21	H211	C22	232.2	240.0
H211	C21	N11	H11	194.2	182.2
N11	C21	H211	H212	116.1	120.0
H211	C21	C22	C23	216.8	330.0
H211	C21	C22	C27	36.6	149.7
C22	C21	H211	H212	243.9	240.0
N11	C21	H212	C22	127.8	120.0
H212	C21	N11	H11	314.2	302.2
N11	C21	H212	H211	243.9	240.0
H212	C21	C22	C23	96.8	210.0
H212	C21	C22	C27	276.6	29.7
C22	C21	H212	H211	116.1	120.0
H21	O21	C23	C24	359.7	270.0
H251	C25	C24	N21	360.0	270.0
C24	C25	H251	H252	120.0	120.0
C24	C25	H251	H253	240.0	240.0
H252	C25	H251	H253	120.0	120.0
H252	C25	C24	N21	120.0	30.1
C24	C25	H252	H251	240.0	240.0
C24	C25	H252	H253	120.0	120.0
H251	C25	H252	H253	240.0	240.0
H253	C25	C24	N21	240.0	150.1
C24	C25	H253	H251	120.0	120.0
C24	C25	H253	H252	240.0	240.1
H251	C25	H253	H252	120.0	120.1
N21	C26	H26	C27	180.0	179.8
H26	C26	C27	C28	359.7	0.1
C27	C28	H281	O22	240.2	239.9
C27	C28	H281	H282	120.1	119.9
H281	C28	O22	P	84.2	59.9
O22	C28	H281	H282	239.9	240.0
C27	C28	H282	O22	119.8	120.0
C27	C28	H282	H281	239.9	240.0
H282	C28	O22	P	324.2	300.0
O22	C28	H282	H281	120.1	120.0
H1P	O1P	P	O2P	126.0	60.0
H1P	O1P	P	O3P	360.0	300.0
H2P	O2P	P	O3P	360.0	180.0