PDB Chemical Component PLJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PLJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CM |
OXT |
1.471 |
1.452 |
| O |
C |
1.226 |
1.208 |
| CG |
CB |
1.541 |
1.546 |
| CG |
CD |
1.527 |
1.549 |
| CB |
CA |
1.557 |
1.539 |
| CD |
N |
1.483 |
1.484 |
| OXT |
C |
1.323 |
1.342 |
| C |
CA |
1.521 |
1.507 |
| CA |
N |
1.471 |
1.478 |
| CM |
HM1 |
1.100 |
1.090 |
| CM |
HM2 |
1.100 |
1.090 |
| CM |
HM3 |
1.100 |
1.089 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.099 |
1.090 |
| CD |
HD2 |
1.100 |
1.090 |
| CD |
HD3 |
1.100 |
1.090 |
| CA |
HA |
1.100 |
1.090 |
| N |
H |
1.000 |
1.009 |
Bond Angles for PLJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CM |
OXT |
C |
113.9 |
117.0 |
| OXT |
CM |
HM1 |
109.5 |
109.5 |
| OXT |
CM |
HM2 |
109.4 |
109.5 |
| OXT |
CM |
HM3 |
109.5 |
109.5 |
| O |
C |
OXT |
118.7 |
120.0 |
| O |
C |
CA |
123.7 |
120.0 |
| CB |
CG |
CD |
100.7 |
102.9 |
| CG |
CB |
CA |
105.7 |
105.1 |
| CB |
CG |
HG2 |
111.6 |
110.7 |
| CB |
CG |
HG3 |
111.6 |
110.7 |
| CG |
CB |
HB2 |
110.4 |
110.3 |
| CG |
CB |
HB3 |
110.4 |
110.3 |
| CG |
CD |
N |
104.8 |
103.2 |
| CD |
CG |
HG2 |
111.6 |
110.7 |
| CD |
CG |
HG3 |
111.6 |
110.8 |
| CG |
CD |
HD2 |
110.6 |
110.7 |
| CG |
CD |
HD3 |
110.6 |
110.6 |
| CB |
CA |
C |
116.3 |
109.9 |
| CB |
CA |
N |
103.5 |
107.0 |
| CA |
CB |
HB2 |
110.4 |
110.3 |
| CA |
CB |
HB3 |
110.4 |
110.4 |
| CB |
CA |
HA |
107.4 |
109.9 |
| CD |
N |
CA |
110.8 |
105.9 |
| N |
CD |
HD2 |
110.6 |
110.7 |
| N |
CD |
HD3 |
110.6 |
110.7 |
| CD |
N |
H |
109.1 |
111.0 |
| OXT |
C |
CA |
117.5 |
120.0 |
| C |
CA |
N |
112.9 |
109.9 |
| C |
CA |
HA |
107.9 |
109.9 |
| N |
CA |
HA |
108.5 |
110.1 |
| CA |
N |
H |
109.1 |
111.0 |
| HM1 |
CM |
HM2 |
109.5 |
109.5 |
| HM1 |
CM |
HM3 |
109.5 |
109.5 |
| HM2 |
CM |
HM3 |
109.5 |
109.4 |
| HG2 |
CG |
HG3 |
109.5 |
110.8 |
| HB2 |
CB |
HB3 |
109.5 |
110.3 |
| HD2 |
CD |
HD3 |
109.4 |
110.7 |
Torsion Angles for PLJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
CM |
165.9 |
0.0 |
| CM |
OXT |
C |
CA |
342.5 |
180.1 |
| HM1 |
CM |
OXT |
HM2 |
240.0 |
240.0 |
| HM1 |
CM |
OXT |
HM3 |
120.0 |
120.0 |
| HM2 |
CM |
OXT |
HM3 |
240.0 |
240.1 |
| CM |
OXT |
C |
O |
165.9 |
0.0 |
| CB |
CA |
C |
O |
252.2 |
100.0 |
| OXT |
C |
O |
CA |
176.4 |
180.0 |
| O |
C |
CA |
N |
132.8 |
342.5 |
| O |
C |
CA |
HA |
12.9 |
221.1 |
| CB |
CG |
CD |
N |
36.1 |
37.4 |
| CD |
CG |
CB |
HG2 |
241.4 |
241.6 |
| CD |
CG |
CB |
HG3 |
118.6 |
118.4 |
| CB |
CG |
CD |
HD2 |
155.4 |
155.9 |
| CB |
CG |
CD |
HD3 |
276.9 |
278.9 |
| CG |
CB |
CA |
C |
258.2 |
239.4 |
| CG |
CB |
CA |
N |
22.7 |
358.7 |
| CA |
CB |
CG |
HB2 |
240.6 |
241.1 |
| CA |
CB |
CG |
HB3 |
119.4 |
119.0 |
| CG |
CB |
CA |
HA |
137.3 |
118.3 |
| HG2 |
CG |
CB |
HG3 |
237.2 |
236.7 |
| HB2 |
CB |
CG |
HB3 |
238.8 |
237.9 |
| CD |
CG |
CB |
CA |
323.8 |
338.1 |
| CB |
CG |
CD |
HG2 |
118.6 |
118.3 |
| CB |
CG |
CD |
HG3 |
241.4 |
241.7 |
| CD |
CG |
CB |
HB2 |
83.2 |
97.0 |
| CD |
CG |
CB |
HB3 |
204.4 |
219.1 |
| CG |
CD |
N |
CA |
336.2 |
320.8 |
| N |
CD |
CG |
HD2 |
240.7 |
241.5 |
| N |
CD |
CG |
HD3 |
119.3 |
118.5 |
| CG |
CD |
N |
H |
96.4 |
81.3 |
| HG2 |
CG |
CD |
HG3 |
122.9 |
123.3 |
| HD2 |
CD |
CG |
HD3 |
238.5 |
237.0 |
| O |
C |
CA |
CB |
252.2 |
100.0 |
| CA |
CB |
CG |
CD |
323.8 |
338.1 |
| CA |
CB |
CG |
HG2 |
82.4 |
96.4 |
| CA |
CB |
CG |
HG3 |
205.2 |
219.7 |
| CG |
CB |
CA |
HB2 |
119.4 |
118.9 |
| CG |
CB |
CA |
HB3 |
240.6 |
241.1 |
| CD |
N |
CA |
CB |
0.6 |
25.4 |
| OXT |
C |
CA |
CB |
75.7 |
280.0 |
| C |
CA |
CB |
N |
235.6 |
240.7 |
| C |
CA |
CB |
HA |
121.0 |
121.1 |
| N |
CA |
CB |
HA |
245.4 |
240.4 |
| CB |
CA |
N |
H |
240.4 |
264.8 |
| HB2 |
CB |
CA |
HB3 |
121.2 |
122.2 |
| N |
CD |
CG |
HG2 |
277.6 |
279.0 |
| N |
CD |
CG |
HG3 |
154.7 |
155.7 |
| CG |
CD |
N |
HD2 |
119.3 |
118.4 |
| CG |
CD |
N |
HD3 |
240.7 |
241.6 |
| CB |
CA |
N |
CD |
0.6 |
25.4 |
| C |
CA |
N |
CD |
127.2 |
144.7 |
| CD |
N |
CA |
HA |
246.7 |
265.9 |
| CA |
N |
CD |
H |
239.8 |
239.4 |
| HD2 |
CD |
N |
HD3 |
121.4 |
123.1 |
| C |
OXT |
CM |
HM1 |
180.0 |
60.0 |
| C |
OXT |
CM |
HM2 |
300.0 |
180.0 |
| C |
OXT |
CM |
HM3 |
60.0 |
300.0 |
| O |
C |
OXT |
CA |
183.4 |
180.0 |
| CB |
CA |
C |
OXT |
75.7 |
280.0 |
| OXT |
C |
CA |
N |
316.3 |
162.5 |
| OXT |
C |
CA |
HA |
196.5 |
41.1 |
| O |
C |
CA |
OXT |
176.4 |
180.0 |
| CB |
CA |
C |
N |
119.4 |
117.6 |
| C |
CA |
CB |
HB2 |
138.9 |
120.5 |
| C |
CA |
CB |
HB3 |
17.6 |
358.3 |
| CB |
CA |
C |
HA |
239.3 |
238.9 |
| CD |
N |
CA |
C |
127.2 |
144.7 |
| N |
CA |
C |
HA |
119.9 |
121.4 |
| C |
CA |
N |
H |
7.0 |
24.1 |
| CB |
CA |
N |
C |
233.4 |
240.7 |
| N |
CA |
CB |
HB2 |
263.3 |
239.9 |
| N |
CA |
CB |
HB3 |
142.0 |
117.7 |
| CB |
CA |
N |
HA |
113.9 |
119.4 |
| CA |
N |
CD |
HD2 |
217.0 |
202.3 |
| CA |
N |
CD |
HD3 |
95.5 |
79.2 |
| CD |
N |
CA |
H |
120.2 |
120.6 |
| C |
CA |
N |
HA |
240.5 |
238.7 |
| HM1 |
CM |
OXT |
C |
180.0 |
60.0 |
| OXT |
CM |
HM1 |
HM2 |
120.0 |
120.0 |
| OXT |
CM |
HM1 |
HM3 |
240.0 |
240.0 |
| HM2 |
CM |
HM1 |
HM3 |
120.0 |
120.0 |
| HM2 |
CM |
OXT |
C |
300.0 |
180.0 |
| OXT |
CM |
HM2 |
HM1 |
240.0 |
240.0 |
| OXT |
CM |
HM2 |
HM3 |
120.0 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
240.0 |
240.0 |
| HM3 |
CM |
OXT |
C |
60.0 |
300.0 |
| OXT |
CM |
HM3 |
HM1 |
120.0 |
120.0 |
| OXT |
CM |
HM3 |
HM2 |
240.0 |
240.0 |
| HM1 |
CM |
HM3 |
HM2 |
120.0 |
120.0 |
| CB |
CG |
HG2 |
CD |
248.1 |
246.5 |
| HG2 |
CG |
CB |
CA |
82.4 |
96.4 |
| CB |
CG |
HG2 |
HG3 |
124.1 |
123.2 |
| HG2 |
CG |
CB |
HB2 |
201.8 |
215.4 |
| HG2 |
CG |
CB |
HB3 |
323.0 |
337.5 |
| HG2 |
CG |
CD |
N |
277.6 |
279.0 |
| CD |
CG |
HG2 |
HG3 |
235.9 |
236.7 |
| HG2 |
CG |
CD |
HD2 |
36.8 |
37.5 |
| HG2 |
CG |
CD |
HD3 |
158.3 |
160.6 |
| CB |
CG |
HG3 |
CD |
111.9 |
113.5 |
| HG3 |
CG |
CB |
CA |
205.2 |
219.7 |
| CB |
CG |
HG3 |
HG2 |
236.0 |
236.8 |
| HG3 |
CG |
CB |
HB2 |
324.6 |
338.6 |
| HG3 |
CG |
CB |
HB3 |
85.8 |
100.7 |
| HG3 |
CG |
CD |
N |
154.7 |
155.7 |
| CD |
CG |
HG3 |
HG2 |
124.1 |
123.3 |
| HG3 |
CG |
CD |
HD2 |
274.0 |
274.2 |
| HG3 |
CG |
CD |
HD3 |
35.4 |
37.2 |
| HB2 |
CB |
CG |
CD |
83.2 |
97.0 |
| CG |
CB |
HB2 |
CA |
243.5 |
244.3 |
| HB2 |
CB |
CG |
HG2 |
201.8 |
215.4 |
| HB2 |
CB |
CG |
HG3 |
324.6 |
338.6 |
| CG |
CB |
HB2 |
HB3 |
121.8 |
122.1 |
| HB2 |
CB |
CA |
C |
138.9 |
120.5 |
| HB2 |
CB |
CA |
N |
263.3 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
238.2 |
237.8 |
| HB2 |
CB |
CA |
HA |
17.9 |
359.5 |
| HB3 |
CB |
CG |
CD |
204.4 |
219.1 |
| CG |
CB |
HB3 |
CA |
116.5 |
115.7 |
| HB3 |
CB |
CG |
HG2 |
323.0 |
337.5 |
| HB3 |
CB |
CG |
HG3 |
85.8 |
100.7 |
| CG |
CB |
HB3 |
HB2 |
238.2 |
237.9 |
| HB3 |
CB |
CA |
C |
17.6 |
358.3 |
| HB3 |
CB |
CA |
N |
142.0 |
117.7 |
| CA |
CB |
HB3 |
HB2 |
121.7 |
122.2 |
| HB3 |
CB |
CA |
HA |
256.7 |
237.3 |
| CG |
CD |
HD2 |
N |
244.3 |
246.2 |
| HD2 |
CD |
CG |
HG2 |
36.8 |
37.5 |
| HD2 |
CD |
CG |
HG3 |
274.0 |
274.2 |
| CG |
CD |
HD2 |
HD3 |
122.2 |
123.0 |
| HD2 |
CD |
N |
CA |
217.0 |
202.3 |
| N |
CD |
HD2 |
HD3 |
237.9 |
236.8 |
| HD2 |
CD |
N |
H |
337.1 |
322.9 |
| CG |
CD |
HD3 |
N |
115.7 |
113.8 |
| HD3 |
CD |
CG |
HG2 |
158.3 |
160.6 |
| HD3 |
CD |
CG |
HG3 |
35.4 |
37.2 |
| CG |
CD |
HD3 |
HD2 |
237.8 |
237.0 |
| HD3 |
CD |
N |
CA |
95.5 |
79.2 |
| N |
CD |
HD3 |
HD2 |
122.1 |
123.1 |
| HD3 |
CD |
N |
H |
215.7 |
199.8 |
| CB |
CA |
HA |
C |
126.2 |
121.0 |
| CB |
CA |
HA |
N |
248.8 |
242.3 |
| HA |
CA |
CB |
HB2 |
17.9 |
359.5 |
| HA |
CA |
CB |
HB3 |
256.7 |
237.3 |
| C |
CA |
HA |
N |
122.6 |
121.3 |
| HA |
CA |
N |
H |
126.5 |
145.3 |
| CD |
N |
H |
CA |
238.8 |
242.5 |
| H |
N |
CD |
HD2 |
337.1 |
322.9 |
| H |
N |
CD |
HD3 |
215.7 |
199.8 |
| H |
N |
CA |
HA |
126.5 |
145.3 |