PDB Chemical Component PLH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PLH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.457 1.507
C1 N1 1.341 1.348
C1 O2 1.230 1.212
C2 C3 1.550 1.529
C2 H21 1.115 1.090
C2 H22 1.115 1.090
C3 C4 1.549 1.530
C3 C8 1.468 1.507
C3 H3 1.115 1.089
C4 C5 1.541 1.529
C4 H41 1.115 1.090
C4 H42 1.115 1.090
C5 C6 1.550 1.530
C5 C7 1.529 1.531
C5 H5 1.115 1.090
C6 H61 1.115 1.090
C6 H62 1.114 1.090
C6 H63 1.115 1.090
C7 H71 1.115 1.090
C7 H72 1.114 1.090
C7 H73 1.115 1.090
C8 N2 1.362 1.346
C8 O3 1.236 1.213
C9 C10 1.463 1.507
C9 C12 1.537 1.529
C9 N2 1.416 1.465
C9 H9 1.114 1.090
C10 N3 1.319 1.347
C10 O4 1.249 1.213
C11 N3 1.419 1.465
C11 H111 1.115 1.090
C11 H112 1.115 1.090
C11 H113 1.116 1.090
C12 C13 1.470 1.507
C12 H121 1.116 1.090
C12 H122 1.115 1.090
C13 C14 1.374 1.382
C13 C18 1.390 1.382
C14 C15 1.381 1.382
C14 H14 1.103 1.080
C15 C16 1.394 1.383
C15 H15 1.102 1.079
C16 C17 1.358 1.382
C16 H16 1.102 1.080
C17 C18 1.380 1.382
C17 H17 1.103 1.080
C18 H18 1.103 1.080
N1 O1 1.284 1.416
N1 HN1 1.020 0.970
N2 HN2 1.020 0.970
N3 HN3 1.020 0.970
O1 HO1 0.949 0.967

Bond Angles for PLH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 N1 121.6 120.0
C2 C1 O2 117.1 120.0
C1 C2 C3 110.9 109.5
C1 C2 H21 111.7 109.5
C1 C2 H22 111.7 109.5
N1 C1 O2 121.3 120.0
C1 N1 O1 125.8 120.0
C1 N1 HN1 119.5 120.1
C3 C2 H21 111.6 109.5
C3 C2 H22 111.7 109.5
C2 C3 C4 115.3 109.5
C2 C3 C8 109.5 109.5
C2 C3 H3 106.4 109.5
H21 C2 H22 98.8 109.5
C4 C3 C8 112.4 109.5
C4 C3 H3 103.0 109.5
C3 C4 C5 121.3 109.5
C3 C4 H41 108.0 109.4
C3 C4 H42 108.0 109.5
C8 C3 H3 109.8 109.4
C3 C8 N2 120.4 120.0
C3 C8 O3 119.4 119.9
C5 C4 H41 107.9 109.5
C5 C4 H42 107.9 109.5
C4 C5 C6 110.2 109.5
C4 C5 C7 109.0 109.5
C4 C5 H5 108.0 109.5
H41 C4 H42 101.9 109.5
C6 C5 C7 105.1 109.5
C6 C5 H5 111.6 109.5
C5 C6 H61 110.2 109.5
C5 C6 H62 111.9 109.5
C5 C6 H63 111.9 109.5
C7 C5 H5 112.8 109.5
C5 C7 H71 109.1 109.4
C5 C7 H72 112.4 109.4
C5 C7 H73 112.4 109.5
H61 C6 H62 111.9 109.5
H61 C6 H63 111.9 109.4
H62 C6 H63 98.5 109.5
H71 C7 H72 112.3 109.5
H71 C7 H73 112.3 109.5
H72 C7 H73 98.1 109.5
N2 C8 O3 120.2 120.0
C8 N2 C9 123.5 120.1
C8 N2 HN2 116.2 120.0
C10 C9 C12 104.3 109.4
C10 C9 N2 114.9 109.5
C10 C9 H9 109.8 109.5
C9 C10 N3 113.8 120.0
C9 C10 O4 119.1 120.0
C12 C9 N2 110.8 109.5
C12 C9 H9 114.1 109.5
C9 C12 C13 113.6 109.4
C9 C12 H121 110.6 109.5
C9 C12 H122 110.6 109.5
N2 C9 H9 103.3 109.4
C9 N2 HN2 120.3 119.9
N3 C10 O4 127.0 120.0
C10 N3 C11 120.8 120.0
C10 N3 HN3 115.9 120.0
N3 C11 H111 120.8 109.4
N3 C11 H112 108.2 109.5
N3 C11 H113 108.2 109.5
C11 N3 HN3 123.3 120.0
H111 C11 H112 108.2 109.4
H111 C11 H113 108.1 109.5
H112 C11 H113 101.7 109.5
C13 C12 H121 110.7 109.4
C13 C12 H122 110.8 109.5
C12 C13 C14 122.1 120.0
C12 C13 C18 120.8 120.0
H121 C12 H122 99.6 109.5
C14 C13 C18 117.1 120.0
C13 C14 C15 121.1 120.0
C13 C14 H14 119.2 120.0
C13 C18 C17 123.5 120.0
C13 C18 H18 118.6 120.0
C15 C14 H14 119.7 120.0
C14 C15 C16 119.3 120.0
C14 C15 H15 119.9 120.0
C16 C15 H15 120.8 120.0
C15 C16 C17 121.4 120.0
C15 C16 H16 120.6 120.0
C17 C16 H16 117.9 120.1
C16 C17 C18 117.5 120.1
C16 C17 H17 120.5 119.9
C18 C17 H17 122.0 120.0
C17 C18 H18 117.9 120.0
O1 N1 HN1 114.7 120.0
N1 O1 HO1 125.8 106.8

Torsion Angles for PLH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C2 O2 180.9 180.0
C2 C1 N1 O1 177.4 180.0
C2 C1 N1 HN1 357.5 0.1
C3 C2 C1 H21 234.8 120.0
C3 C2 C1 H22 125.2 240.0
C1 C2 C3 C4 57.9 60.0
C1 C2 C3 C8 185.7 180.0
C1 C2 C3 H3 304.3 300.0
H21 C2 C1 H22 250.4 120.0
C2 C1 N1 O2 179.1 180.0
N1 C1 C2 C3 250.7 179.9
N1 C1 C2 H21 15.9 60.0
N1 C1 C2 H22 125.5 300.0
O1 N1 C1 HN1 180.0 179.9
C1 N1 O1 HO1 180.1 180.0
C2 C1 O2 N1 180.9 180.0
O2 C1 C2 C3 69.9 360.0
O2 C1 C2 H21 195.0 240.0
O2 C1 C2 H22 304.6 120.0
O2 C1 N1 O1 358.3 360.0
O2 C1 N1 HN1 178.4 180.1
C3 C2 C1 N1 250.7 179.9
C3 C2 C1 O2 69.9 360.0
C1 C2 C3 H21 125.2 240.0
C1 C2 C3 H22 234.8 120.0
H21 C2 C3 H22 109.6 240.0
C4 C3 C2 C8 232.1 240.0
C4 C3 C2 H3 113.6 120.0
C2 C3 C4 C5 188.5 235.8
C2 C3 C4 H41 313.8 355.8
C2 C3 C4 H42 63.3 115.8
C8 C3 C2 H3 241.4 240.0
C2 C3 C8 N2 119.6 123.7
C2 C3 C8 O3 299.5 303.6
H21 C2 C1 N1 15.9 60.0
H21 C2 C1 O2 195.0 240.0
C1 C2 H21 C3 235.2 120.0
C1 C2 H21 H22 117.6 240.0
C3 C2 H21 H22 242.4 120.0
H21 C2 C3 C4 292.6 180.0
H21 C2 C3 C8 60.5 300.0
H21 C2 C3 H3 179.1 60.0
H22 C2 C1 N1 125.5 300.0
H22 C2 C1 O2 304.6 120.0
C1 C2 H22 C3 124.8 240.0
C1 C2 H22 H21 242.4 120.0
C3 C2 H22 H21 117.6 240.0
H22 C2 C3 C4 183.1 300.0
H22 C2 C3 C8 310.9 60.0
H22 C2 C3 H3 69.5 180.0
C4 C3 C2 H21 292.6 180.0
C4 C3 C2 H22 183.1 300.0
C2 C3 C4 C8 126.4 120.0
C2 C3 C4 H3 244.5 240.0
C8 C3 C4 H3 118.1 120.0
C4 C3 C8 N2 249.2 243.6
C4 C3 C8 O3 69.0 63.6
C5 C4 C3 H41 234.7 240.0
C5 C4 C3 H42 125.2 120.0
C3 C4 C5 C6 71.2 174.5
C3 C4 C5 C7 186.1 294.5
C3 C4 C5 H5 309.0 54.5
H41 C4 C3 H42 250.5 240.0
C8 C3 C2 H21 60.5 300.0
C8 C3 C2 H22 310.9 60.0
C2 C3 C8 C4 230.5 240.0
C2 C3 C8 H3 116.4 120.0
C4 C3 C8 H3 245.9 240.0
C8 C3 C4 C5 62.1 115.8
C8 C3 C4 H41 187.4 235.8
C8 C3 C4 H42 296.9 355.8
N2 C8 C3 O3 180.1 180.1
C3 C8 N2 C9 181.2 185.7
C3 C8 N2 HN2 1.2 5.6
H3 C3 C2 H21 179.1 60.0
H3 C3 C2 H22 69.5 180.0
C2 C3 H3 C4 121.7 120.0
C2 C3 H3 C8 241.6 240.0
C4 C3 H3 C8 119.9 120.0
H3 C3 C4 C5 304.0 355.9
H3 C3 C4 H41 69.3 115.8
H3 C3 C4 H42 178.8 235.8
H3 C3 C8 N2 3.2 3.6
H3 C3 C8 O3 183.1 183.6
C5 C4 C3 C8 62.1 115.8
C5 C4 C3 H3 304.0 355.9
C3 C4 C5 H41 125.3 120.0
C3 C4 C5 H42 234.7 240.0
H41 C4 C5 H42 109.4 120.0
C6 C5 C4 C7 245.1 240.0
C6 C5 C4 H5 122.2 120.0
C4 C5 C6 H61 180.0 180.0
C4 C5 C6 H62 305.3 300.0
C4 C5 C6 H63 54.8 60.0
C7 C5 C4 H5 237.1 240.0
C4 C5 C7 H71 180.0 305.9
C4 C5 C7 H72 305.2 65.9
C4 C5 C7 H73 54.8 185.9
H41 C4 C3 C8 187.4 235.8
H41 C4 C3 H3 69.3 115.8
C3 C4 H41 C5 227.1 240.0
C3 C4 H41 H42 113.6 120.0
C5 C4 H41 H42 246.5 240.0
H41 C4 C5 C6 305.9 54.5
H41 C4 C5 C7 60.8 174.5
H41 C4 C5 H5 183.7 294.5
H42 C4 C3 C8 296.9 355.8
H42 C4 C3 H3 178.8 235.8
C3 C4 H42 C5 132.8 120.0
C3 C4 H42 H41 246.4 240.0
C5 C4 H42 H41 113.5 120.0
H42 C4 C5 C6 196.5 294.5
H42 C4 C5 C7 311.4 54.5
H42 C4 C5 H5 74.3 174.5
C6 C5 C4 H41 305.9 54.5
C6 C5 C4 H42 196.5 294.5
C4 C5 C6 C7 117.4 120.0
C4 C5 C6 H5 240.0 240.0
C7 C5 C6 H5 122.6 120.0
C6 C5 C7 H71 298.2 66.0
C6 C5 C7 H72 63.4 186.0
C6 C5 C7 H73 172.9 306.0
H61 C6 C5 H62 234.7 240.0
H61 C6 C5 H63 125.2 120.0
H62 C6 C5 H63 250.5 240.0
C7 C5 C4 H41 60.8 174.5
C7 C5 C4 H42 311.4 54.5
C4 C5 C7 C6 241.8 240.0
C4 C5 C7 H5 120.0 120.0
C6 C5 C7 H5 238.1 240.0
C7 C5 C6 H61 62.6 60.0
C7 C5 C6 H62 187.9 180.0
C7 C5 C6 H63 297.4 300.0
H71 C7 C5 H72 234.8 240.0
H71 C7 C5 H73 125.3 120.0
H72 C7 C5 H73 250.5 240.0
H5 C5 C4 H41 183.7 294.5
H5 C5 C4 H42 74.3 174.5
C4 C5 H5 C6 121.3 120.0
C4 C5 H5 C7 239.4 240.0
C6 C5 H5 C7 118.1 120.0
H5 C5 C6 H61 300.0 300.0
H5 C5 C6 H62 65.3 60.0
H5 C5 C6 H63 174.8 180.0
H5 C5 C7 H71 60.1 185.9
H5 C5 C7 H72 185.3 305.9
H5 C5 C7 H73 294.8 65.9
H61 C6 C5 C7 62.6 60.0
H61 C6 C5 H5 300.0 300.0
C5 C6 H61 H62 125.3 120.0
C5 C6 H61 H63 234.8 240.0
H62 C6 H61 H63 109.5 120.0
H62 C6 C5 C7 187.9 180.0
H62 C6 C5 H5 65.3 60.0
C5 C6 H62 H61 235.6 240.0
C5 C6 H62 H63 117.9 120.0
H61 C6 H62 H63 242.2 240.1
H63 C6 C5 C7 297.4 300.0
H63 C6 C5 H5 174.8 180.0
C5 C6 H63 H61 124.3 120.0
C5 C6 H63 H62 242.1 240.0
H61 C6 H63 H62 117.9 120.0
H71 C7 C5 H5 60.1 185.9
C5 C7 H71 H72 125.2 120.0
C5 C7 H71 H73 234.7 240.0
H72 C7 H71 H73 109.5 120.1
H72 C7 C5 H5 185.3 305.9
C5 C7 H72 H71 236.6 240.0
C5 C7 H72 H73 118.4 120.0
H71 C7 H72 H73 241.8 239.9
H73 C7 C5 H5 294.8 65.9
C5 C7 H73 H71 123.5 120.0
C5 C7 H73 H72 241.7 240.0
H71 C7 H73 H72 118.2 120.1
N2 C8 C3 H3 3.2 3.6
C3 C8 N2 O3 179.9 179.9
C10 C9 N2 C8 265.7 267.9
C12 C9 N2 C8 147.8 147.9
C8 N2 C9 H9 25.3 27.9
C9 N2 C8 HN2 179.9 180.1
O3 C8 C3 H3 183.1 183.6
C3 C8 O3 N2 180.1 180.1
O3 C8 N2 C9 1.3 5.8
O3 C8 N2 HN2 181.4 185.7
C8 N2 C9 C10 265.7 267.9
C12 C9 C10 N2 121.5 120.1
C12 C9 C10 H9 237.3 240.0
C10 C9 C12 C13 168.2 180.0
C10 C9 C12 H121 293.5 300.0
C10 C9 C12 H122 42.9 60.0
N2 C9 C10 H9 115.9 119.9
C10 C9 N2 HN2 85.6 88.0
N3 C10 C9 O4 180.0 180.1
C9 C10 N3 C11 178.4 181.4
C9 C10 N3 HN3 358.4 1.2
C8 N2 C9 C12 147.8 147.9
C10 C9 C12 N2 235.9 240.0
C10 C9 C12 H9 119.8 120.0
C12 C9 C10 N3 254.7 85.1
C12 C9 C10 O4 74.8 265.0
N2 C9 C12 H9 244.0 240.0
C12 C9 N2 HN2 327.7 328.0
C13 C12 C9 H121 234.7 240.0
C13 C12 C9 H122 125.3 120.0
C9 C12 C13 C14 102.6 90.0
C9 C12 C13 C18 283.6 269.7
H121 C12 C9 H122 250.6 240.0
C9 N2 C8 O3 1.3 5.8
C8 N2 C9 HN2 180.1 179.9
C10 C9 N2 C12 117.9 120.0
C10 C9 N2 H9 240.4 240.0
N2 C9 C10 N3 133.3 325.0
N2 C9 C10 O4 313.3 144.9
C12 C9 N2 H9 122.5 120.0
N2 C9 C12 C13 292.3 300.0
N2 C9 C12 H121 57.6 60.0
N2 C9 C12 H122 167.0 180.0
C10 C9 H9 C12 243.3 240.0
C10 C9 H9 N2 123.0 120.0
H9 C9 C10 N3 17.4 205.1
H9 C9 C10 O4 197.4 25.0
C12 C9 H9 N2 239.7 239.9
H9 C9 C12 C13 48.3 60.0
H9 C9 C12 H121 173.7 180.0
H9 C9 C12 H122 283.0 300.0
H9 C9 N2 HN2 205.2 208.0
N3 C10 C9 C12 254.7 85.1
N3 C10 C9 N2 133.3 325.0
N3 C10 C9 H9 17.4 205.1
C9 C10 N3 O4 180.0 179.9
C10 N3 C11 H111 180.0 179.9
C10 N3 C11 H112 305.3 299.8
C10 N3 C11 H113 54.7 59.9
C11 N3 C10 HN3 180.0 180.1
O4 C10 C9 C12 74.8 265.0
O4 C10 C9 N2 313.3 144.9
O4 C10 C9 H9 197.4 25.0
C9 C10 O4 N3 180.0 180.1
O4 C10 N3 C11 358.4 1.4
O4 C10 N3 HN3 178.4 181.3
C11 N3 C10 O4 358.4 1.4
C10 N3 C11 HN3 180.0 179.9
H111 C11 N3 H112 234.6 240.1
H111 C11 N3 H113 125.2 120.0
H112 C11 N3 H113 250.6 239.9
N3 C11 H111 H112 125.3 119.9
N3 C11 H111 H113 234.7 240.0
H111 C11 N3 HN3 360.0 0.1
H112 C11 H111 H113 109.4 120.0
N3 C11 H112 H111 227.5 240.1
N3 C11 H112 H113 113.8 120.1
H112 C11 N3 HN3 125.3 120.0
H111 C11 H112 H113 246.3 240.0
N3 C11 H113 H111 132.4 120.0
N3 C11 H113 H112 246.2 240.0
H113 C11 N3 HN3 234.7 240.0
H111 C11 H113 H112 113.8 120.0
C13 C12 C9 N2 292.3 300.0
C13 C12 C9 H9 48.3 60.0
C9 C12 C13 H121 125.3 120.0
C9 C12 C13 H122 234.7 240.0
H121 C12 C13 H122 109.5 120.0
C14 C13 C12 C18 179.0 180.3
C12 C13 C14 C15 180.3 179.9
C12 C13 C14 H14 0.3 0.0
C12 C13 C18 C17 178.4 179.8
C12 C13 C18 H18 358.4 0.3
H121 C12 C9 N2 57.6 60.0
H121 C12 C9 H9 173.7 180.0
C9 C12 H121 C13 233.1 240.0
C9 C12 H121 H122 116.5 120.1
C13 C12 H121 H122 243.4 240.0
H121 C12 C13 C14 337.3 330.0
H121 C12 C13 C18 158.4 149.7
H122 C12 C9 N2 167.0 180.0
H122 C12 C9 H9 283.0 300.0
C9 C12 H122 C13 126.9 120.0
C9 C12 H122 H121 243.5 239.9
C13 C12 H122 H121 116.6 120.0
H122 C12 C13 C14 227.8 210.0
H122 C12 C13 C18 48.9 29.7
C14 C13 C12 H121 337.3 330.0
C14 C13 C12 H122 227.8 210.0
C12 C13 C14 C18 181.0 179.7
C14 C13 C18 C17 359.4 359.5
C14 C13 C18 H18 179.4 179.9
C15 C14 C13 H14 180.0 179.9
C13 C14 C15 C16 0.6 0.0
C13 C14 C15 H15 180.6 179.9
C18 C13 C12 H121 158.4 149.7
C18 C13 C12 H122 48.9 29.7
C12 C13 C18 C14 179.0 180.3
C18 C13 C14 C15 359.3 0.3
C18 C13 C14 H14 179.3 180.3
C16 C17 C18 C13 2.0 0.5
C13 C18 C17 H17 182.0 180.3
C17 C18 C13 H18 180.0 179.6
C15 C14 C13 C18 359.3 0.3
C13 C14 C15 H14 180.0 180.1
C16 C15 C14 H15 180.0 180.1
C14 C15 C16 C17 0.8 360.0
C14 C15 C16 H16 180.8 179.9
H14 C14 C13 C18 179.3 180.3
C13 C14 H14 C15 180.0 179.9
H14 C14 C15 C16 180.6 179.9
H14 C14 C15 H15 0.6 359.8
C16 C15 C14 H14 180.6 179.9
C14 C15 C16 H15 180.0 179.9
C17 C16 C15 H16 180.0 180.1
C15 C16 C17 C18 358.0 359.8
C15 C16 C17 H17 178.0 179.9
H15 C15 C14 H14 0.6 359.8
C14 C15 H15 C16 180.0 180.1
H15 C15 C16 C17 180.8 180.1
H15 C15 C16 H16 0.8 360.0
C13 C18 C17 C16 2.0 0.5
C17 C16 C15 H15 180.8 180.1
C15 C16 C17 H16 180.0 179.9
C18 C17 C16 H17 180.0 179.9
C16 C17 C18 H18 181.9 180.0
H16 C16 C15 H15 0.8 360.0
C15 C16 H16 C17 180.0 180.1
H16 C16 C17 C18 178.0 179.9
H16 C16 C17 H17 358.0 0.0
C13 C18 C17 H18 180.0 180.4
C18 C17 C16 H16 178.0 179.9
C16 C17 C18 H17 180.0 180.1
H17 C17 C16 H16 358.0 0.0
C16 C17 H17 C18 180.0 179.9
H17 C17 C18 H18 1.9 359.9
C13 C18 H18 C17 180.0 179.6
H18 C18 C17 H17 1.9 359.9
O1 N1 C1 O2 358.3 360.0
C1 N1 O1 HN1 180.0 180.1
HN1 N1 C1 O2 178.4 180.1
C1 N1 HN1 O1 180.0 179.9
HN1 N1 O1 HO1 0.0 359.9
HN2 N2 C8 O3 181.4 185.7
C8 N2 HN2 C9 179.9 180.1
HN2 N2 C9 H9 205.2 208.0
HN3 N3 C10 O4 178.4 181.3
C10 N3 HN3 C11 180.0 180.1
HN3 N3 C11 H111 360.0 0.1
HN3 N3 C11 H112 125.3 120.0
HN3 N3 C11 H113 234.7 240.0
HO1 O1 N1 HN1 0.0 359.9