PDB Chemical Component PLF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PLF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O |
C |
1.228 |
1.208 |
C |
CA1 |
1.510 |
1.507 |
C |
OXT |
1.328 |
1.343 |
CA1 |
CB1 |
1.530 |
1.531 |
CA1 |
N2 |
1.477 |
1.465 |
N2 |
C2 |
1.369 |
1.352 |
N2 |
N3 |
1.402 |
1.287 |
C2 |
C1 |
1.387 |
1.354 |
N3 |
N1 |
1.291 |
1.287 |
N1 |
C1 |
1.352 |
1.337 |
C1 |
CA |
1.517 |
1.507 |
CA |
CB |
1.524 |
1.544 |
CA |
N |
1.470 |
1.485 |
CB |
CG |
1.518 |
1.543 |
CG |
CD |
1.528 |
1.544 |
CD |
N |
1.463 |
1.485 |
CA1 |
HA1 |
1.100 |
1.090 |
OXT |
HXT |
0.950 |
0.967 |
CB1 |
HB11 |
1.100 |
1.090 |
CB1 |
HB12 |
1.100 |
1.090 |
CB1 |
HB13 |
1.100 |
1.089 |
C2 |
H20 |
1.080 |
1.081 |
CA |
HA |
1.100 |
1.089 |
CB |
HB1C |
1.100 |
1.089 |
CB |
HB2C |
1.100 |
1.089 |
N |
H |
1.000 |
1.009 |
CG |
HG1C |
1.100 |
1.091 |
CG |
HG2C |
1.100 |
1.090 |
CD |
HD1C |
1.100 |
1.090 |
CD |
HD2C |
1.100 |
1.090 |
Bond Angles for PLF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O |
C |
CA1 |
120.9 |
120.0 |
O |
C |
OXT |
123.7 |
120.0 |
CA1 |
C |
OXT |
115.4 |
120.0 |
C |
CA1 |
CB1 |
109.0 |
109.5 |
C |
CA1 |
N2 |
110.9 |
109.5 |
C |
CA1 |
HA1 |
108.8 |
109.5 |
C |
OXT |
HXT |
109.5 |
116.9 |
CB1 |
CA1 |
N2 |
110.4 |
109.5 |
CB1 |
CA1 |
HA1 |
108.5 |
109.4 |
CA1 |
CB1 |
HB11 |
109.5 |
109.4 |
CA1 |
CB1 |
HB12 |
109.4 |
109.4 |
CA1 |
CB1 |
HB13 |
109.4 |
109.4 |
CA1 |
N2 |
C2 |
132.3 |
125.9 |
CA1 |
N2 |
N3 |
122.1 |
125.8 |
N2 |
CA1 |
HA1 |
109.2 |
109.5 |
C2 |
N2 |
N3 |
105.7 |
108.3 |
N2 |
C2 |
C1 |
107.1 |
106.2 |
N2 |
C2 |
H20 |
126.5 |
126.9 |
N2 |
N3 |
N1 |
110.0 |
110.1 |
C2 |
C1 |
N1 |
108.0 |
106.5 |
C2 |
C1 |
CA |
127.6 |
126.7 |
C1 |
C2 |
H20 |
126.5 |
126.9 |
N3 |
N1 |
C1 |
109.2 |
108.9 |
N1 |
C1 |
CA |
124.4 |
126.8 |
C1 |
CA |
CB |
110.1 |
110.4 |
C1 |
CA |
N |
112.3 |
110.4 |
C1 |
CA |
HA |
109.7 |
110.3 |
CB |
CA |
N |
104.7 |
104.6 |
CA |
CB |
CG |
104.8 |
105.0 |
CB |
CA |
HA |
109.6 |
110.4 |
CA |
CB |
HB1C |
110.6 |
110.4 |
CA |
CB |
HB2C |
110.6 |
110.3 |
CA |
N |
CD |
111.6 |
104.2 |
N |
CA |
HA |
110.3 |
110.6 |
CA |
N |
H |
108.9 |
111.0 |
CB |
CG |
CD |
107.0 |
105.1 |
CG |
CB |
HB1C |
110.6 |
110.3 |
CG |
CB |
HB2C |
110.6 |
110.3 |
CB |
CG |
HG1C |
110.1 |
110.3 |
CB |
CG |
HG2C |
110.1 |
110.4 |
CG |
CD |
N |
105.1 |
104.6 |
CD |
CG |
HG1C |
110.1 |
110.3 |
CD |
CG |
HG2C |
110.1 |
110.3 |
CG |
CD |
HD1C |
110.5 |
110.4 |
CG |
CD |
HD2C |
110.5 |
110.4 |
CD |
N |
H |
108.9 |
111.0 |
N |
CD |
HD1C |
110.6 |
110.4 |
N |
CD |
HD2C |
110.5 |
110.4 |
HB11 |
CB1 |
HB12 |
109.5 |
109.5 |
HB11 |
CB1 |
HB13 |
109.5 |
109.5 |
HB12 |
CB1 |
HB13 |
109.5 |
109.5 |
HB1C |
CB |
HB2C |
109.5 |
110.4 |
HG1C |
CG |
HG2C |
109.4 |
110.3 |
HD1C |
CD |
HD2C |
109.5 |
110.4 |
Torsion Angles for PLF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA1 |
C |
O |
OXT |
180.3 |
180.2 |
O |
C |
CA1 |
CB1 |
82.9 |
120.0 |
O |
C |
CA1 |
N2 |
321.1 |
0.0 |
O |
C |
CA1 |
HA1 |
201.1 |
240.0 |
O |
C |
OXT |
HXT |
360.0 |
359.9 |
O |
C |
CA1 |
OXT |
179.8 |
179.8 |
CA1 |
C |
OXT |
HXT |
179.8 |
179.7 |
CB1 |
CA1 |
C |
N2 |
121.8 |
120.0 |
CB1 |
CA1 |
C |
HA1 |
241.9 |
240.0 |
C |
CA1 |
CB1 |
HB11 |
180.0 |
300.0 |
C |
CA1 |
CB1 |
HB12 |
300.0 |
60.0 |
C |
CA1 |
CB1 |
HB13 |
60.0 |
180.0 |
C |
CA1 |
N2 |
C2 |
292.0 |
35.0 |
C |
CA1 |
N2 |
N3 |
112.9 |
214.7 |
N2 |
CA1 |
C |
HA1 |
120.1 |
120.0 |
O |
C |
OXT |
CA1 |
180.2 |
180.2 |
OXT |
C |
CA1 |
CB1 |
263.2 |
300.2 |
OXT |
C |
CA1 |
N2 |
141.4 |
180.2 |
OXT |
C |
CA1 |
HA1 |
21.3 |
60.2 |
CB1 |
CA1 |
C |
OXT |
263.2 |
300.2 |
C |
CA1 |
CB1 |
N2 |
237.9 |
240.0 |
C |
CA1 |
CB1 |
HA1 |
118.3 |
120.0 |
CB1 |
CA1 |
N2 |
C2 |
171.0 |
275.1 |
CB1 |
CA1 |
N2 |
N3 |
351.9 |
94.7 |
N2 |
CA1 |
CB1 |
HA1 |
240.4 |
240.0 |
HB11 |
CB1 |
CA1 |
HB12 |
240.0 |
240.0 |
HB11 |
CB1 |
CA1 |
HB13 |
120.0 |
120.0 |
HB12 |
CB1 |
CA1 |
HB13 |
240.1 |
240.0 |
N2 |
CA1 |
C |
OXT |
141.4 |
180.2 |
C |
CA1 |
N2 |
CB1 |
120.9 |
120.0 |
C |
CA1 |
N2 |
HA1 |
240.2 |
240.0 |
CB1 |
CA1 |
N2 |
HA1 |
119.2 |
120.0 |
N2 |
CA1 |
CB1 |
HB11 |
302.1 |
60.0 |
N2 |
CA1 |
CB1 |
HB12 |
62.1 |
180.0 |
N2 |
CA1 |
CB1 |
HB13 |
182.1 |
300.0 |
C2 |
N2 |
CA1 |
N3 |
179.1 |
180.4 |
CA1 |
N2 |
C2 |
C1 |
180.6 |
180.0 |
CA1 |
N2 |
C2 |
H20 |
0.6 |
359.9 |
CA1 |
N2 |
N3 |
N1 |
179.6 |
180.0 |
CA1 |
N2 |
C2 |
N3 |
180.8 |
179.7 |
C2 |
N2 |
CA1 |
HA1 |
51.8 |
155.1 |
C2 |
N2 |
N3 |
N1 |
0.3 |
359.7 |
N2 |
C2 |
C1 |
N1 |
0.0 |
359.8 |
N2 |
C2 |
C1 |
CA |
179.3 |
179.9 |
C1 |
C2 |
N2 |
H20 |
180.0 |
180.1 |
CA1 |
N2 |
N3 |
C2 |
179.3 |
180.3 |
N3 |
N2 |
CA1 |
HA1 |
232.7 |
334.7 |
N3 |
N2 |
C2 |
C1 |
359.8 |
0.3 |
N3 |
N2 |
C2 |
H20 |
179.8 |
180.2 |
N2 |
N3 |
N1 |
C1 |
359.7 |
0.2 |
C1 |
C2 |
N2 |
N3 |
359.8 |
0.3 |
N2 |
C2 |
C1 |
H20 |
180.0 |
179.9 |
N3 |
N1 |
C1 |
C2 |
0.2 |
0.0 |
N1 |
C1 |
C2 |
CA |
180.8 |
179.8 |
C2 |
C1 |
CA |
CB |
103.0 |
125.0 |
C2 |
C1 |
CA |
N |
346.7 |
9.8 |
C2 |
C1 |
CA |
HA |
223.7 |
247.3 |
C2 |
C1 |
N1 |
N3 |
0.2 |
0.0 |
N3 |
N1 |
C1 |
CA |
180.9 |
179.9 |
C2 |
C1 |
N1 |
CA |
179.3 |
180.2 |
N1 |
C1 |
C2 |
H20 |
180.1 |
179.9 |
N1 |
C1 |
CA |
CB |
282.1 |
305.2 |
N1 |
C1 |
CA |
N |
165.8 |
190.0 |
N1 |
C1 |
CA |
HA |
42.8 |
67.5 |
C2 |
C1 |
CA |
N1 |
180.9 |
179.8 |
CA |
C1 |
C2 |
H20 |
359.3 |
0.1 |
CB |
CA |
C1 |
N |
116.3 |
115.2 |
C1 |
CA |
CB |
CG |
265.1 |
217.3 |
CB |
CA |
C1 |
HA |
239.3 |
237.7 |
C1 |
CA |
CB |
HB1C |
24.3 |
336.2 |
C1 |
CA |
CB |
HB2C |
145.8 |
98.5 |
C1 |
CA |
N |
CD |
99.4 |
158.3 |
N |
CA |
C1 |
HA |
123.0 |
122.5 |
C1 |
CA |
N |
H |
219.7 |
277.8 |
C1 |
CA |
CB |
N |
239.0 |
241.2 |
C1 |
CA |
CB |
HA |
120.7 |
122.2 |
CB |
CA |
N |
CD |
339.9 |
39.5 |
N |
CA |
CB |
HA |
241.7 |
241.0 |
CB |
CA |
N |
H |
100.2 |
159.1 |
CA |
CB |
CG |
CD |
336.8 |
0.0 |
CG |
CB |
CA |
HB1C |
240.8 |
241.1 |
CG |
CB |
CA |
HB2C |
119.2 |
118.8 |
CA |
CB |
CG |
HG1C |
96.4 |
119.0 |
CA |
CB |
CG |
HG2C |
217.2 |
241.1 |
HB1C |
CB |
CA |
HB2C |
238.5 |
237.7 |
C1 |
CA |
N |
CB |
119.5 |
118.7 |
C1 |
CA |
N |
HA |
237.3 |
237.6 |
N |
CA |
CB |
CG |
26.0 |
336.1 |
CB |
CA |
N |
HA |
117.8 |
118.9 |
N |
CA |
CB |
HB1C |
145.3 |
95.0 |
N |
CA |
CB |
HB2C |
266.8 |
217.3 |
CG |
CD |
N |
CA |
5.6 |
320.5 |
CD |
N |
CA |
H |
239.7 |
240.4 |
CA |
N |
CD |
HD1C |
246.3 |
201.7 |
CA |
N |
CD |
HD2C |
124.9 |
79.3 |
CG |
CB |
CA |
N |
26.0 |
336.1 |
CG |
CB |
CA |
HA |
144.3 |
95.1 |
CA |
CB |
CG |
HB1C |
119.3 |
118.9 |
CA |
CB |
CG |
HB2C |
240.7 |
241.2 |
CB |
CG |
CD |
N |
11.3 |
23.8 |
CD |
CG |
CB |
HG1C |
240.4 |
241.1 |
CD |
CG |
CB |
HG2C |
119.6 |
118.9 |
CB |
CG |
CD |
HD1C |
130.6 |
142.7 |
CB |
CG |
CD |
HD2C |
252.0 |
265.1 |
HB1C |
CB |
CG |
HB2C |
121.5 |
122.2 |
HG1C |
CG |
CB |
HG2C |
239.2 |
237.9 |
CA |
N |
CD |
CG |
5.6 |
320.5 |
CD |
CG |
CB |
HB1C |
217.5 |
241.1 |
CD |
CG |
CB |
HB2C |
96.1 |
118.9 |
CB |
CG |
CD |
HG1C |
119.6 |
118.9 |
CB |
CG |
CD |
HG2C |
240.4 |
241.0 |
CG |
CD |
N |
H |
245.3 |
201.0 |
N |
CD |
CG |
HD1C |
240.7 |
241.2 |
N |
CD |
CG |
HD2C |
119.3 |
118.8 |
HG1C |
CG |
CD |
HG2C |
120.7 |
122.1 |
HD1C |
CD |
CG |
HD2C |
238.6 |
237.6 |
CD |
N |
CA |
HA |
222.1 |
280.6 |
CA |
N |
CD |
H |
120.3 |
119.5 |
N |
CD |
CG |
HG1C |
251.7 |
264.9 |
N |
CD |
CG |
HG2C |
131.0 |
142.8 |
CG |
CD |
N |
HD1C |
119.3 |
118.8 |
CG |
CD |
N |
HD2C |
240.7 |
241.2 |
HD1C |
CD |
N |
HD2C |
121.4 |
122.4 |
HA1 |
CA1 |
C |
OXT |
21.3 |
60.2 |
C |
CA1 |
HA1 |
CB1 |
241.6 |
240.0 |
C |
CA1 |
HA1 |
N2 |
121.1 |
120.0 |
CB1 |
CA1 |
HA1 |
N2 |
239.6 |
240.0 |
HA1 |
CA1 |
CB1 |
HB11 |
61.7 |
180.0 |
HA1 |
CA1 |
CB1 |
HB12 |
181.7 |
300.0 |
HA1 |
CA1 |
CB1 |
HB13 |
301.7 |
60.0 |
HA1 |
CA1 |
N2 |
C2 |
51.8 |
155.1 |
HA1 |
CA1 |
N2 |
N3 |
232.7 |
334.7 |
HB11 |
CB1 |
CA1 |
N2 |
302.1 |
60.0 |
HB11 |
CB1 |
CA1 |
HA1 |
61.7 |
180.0 |
CA1 |
CB1 |
HB11 |
HB12 |
120.0 |
119.9 |
CA1 |
CB1 |
HB11 |
HB13 |
240.0 |
240.0 |
HB12 |
CB1 |
HB11 |
HB13 |
120.0 |
120.1 |
HB12 |
CB1 |
CA1 |
N2 |
62.1 |
180.0 |
HB12 |
CB1 |
CA1 |
HA1 |
181.7 |
300.0 |
CA1 |
CB1 |
HB12 |
HB11 |
240.0 |
240.1 |
CA1 |
CB1 |
HB12 |
HB13 |
119.9 |
120.0 |
HB11 |
CB1 |
HB12 |
HB13 |
240.0 |
239.9 |
HB13 |
CB1 |
CA1 |
N2 |
182.1 |
300.0 |
HB13 |
CB1 |
CA1 |
HA1 |
301.7 |
60.0 |
CA1 |
CB1 |
HB13 |
HB11 |
120.0 |
119.9 |
CA1 |
CB1 |
HB13 |
HB12 |
240.1 |
240.0 |
HB11 |
CB1 |
HB13 |
HB12 |
120.0 |
120.1 |
H20 |
C2 |
N2 |
N3 |
179.8 |
180.2 |
N2 |
C2 |
H20 |
C1 |
180.0 |
180.2 |
H20 |
C2 |
C1 |
N1 |
180.1 |
179.9 |
H20 |
C2 |
C1 |
CA |
359.3 |
0.1 |
C1 |
CA |
HA |
CB |
239.0 |
237.8 |
C1 |
CA |
HA |
N |
124.2 |
122.4 |
CB |
CA |
HA |
N |
245.3 |
244.7 |
HA |
CA |
CB |
CG |
144.3 |
95.1 |
HA |
CA |
CB |
HB1C |
263.6 |
214.0 |
HA |
CA |
CB |
HB2C |
25.1 |
336.3 |
HA |
CA |
N |
CD |
222.1 |
280.6 |
HA |
CA |
N |
H |
342.4 |
40.2 |
HB1C |
CB |
CA |
N |
145.3 |
95.0 |
CA |
CB |
HB1C |
CG |
244.3 |
244.4 |
HB1C |
CB |
CA |
HA |
263.6 |
214.0 |
CA |
CB |
HB1C |
HB2C |
122.2 |
122.3 |
HB1C |
CB |
CG |
CD |
217.5 |
241.1 |
CG |
CB |
HB1C |
HB2C |
237.9 |
237.8 |
HB1C |
CB |
CG |
HG1C |
337.2 |
0.0 |
HB1C |
CB |
CG |
HG2C |
97.9 |
122.2 |
HB2C |
CB |
CA |
N |
266.8 |
217.3 |
CA |
CB |
HB2C |
CG |
115.7 |
115.5 |
HB2C |
CB |
CA |
HA |
25.1 |
336.3 |
CA |
CB |
HB2C |
HB1C |
237.8 |
237.7 |
HB2C |
CB |
CG |
CD |
96.1 |
118.9 |
CG |
CB |
HB2C |
HB1C |
122.1 |
122.2 |
HB2C |
CB |
CG |
HG1C |
215.7 |
237.8 |
HB2C |
CB |
CG |
HG2C |
336.5 |
359.9 |
CA |
N |
H |
CD |
238.0 |
244.6 |
H |
N |
CA |
HA |
342.4 |
40.2 |
H |
N |
CD |
HD1C |
126.0 |
82.2 |
H |
N |
CD |
HD2C |
4.6 |
319.8 |
CB |
CG |
HG1C |
CD |
242.3 |
244.3 |
HG1C |
CG |
CB |
HB1C |
337.2 |
0.0 |
HG1C |
CG |
CB |
HB2C |
215.7 |
237.8 |
CB |
CG |
HG1C |
HG2C |
121.2 |
122.2 |
HG1C |
CG |
CD |
N |
251.7 |
264.9 |
CD |
CG |
HG1C |
HG2C |
238.9 |
237.9 |
HG1C |
CG |
CD |
HD1C |
11.0 |
23.8 |
HG1C |
CG |
CD |
HD2C |
132.4 |
146.1 |
CB |
CG |
HG2C |
CD |
117.7 |
115.7 |
HG2C |
CG |
CB |
HB1C |
97.9 |
122.2 |
HG2C |
CG |
CB |
HB2C |
336.5 |
359.9 |
CB |
CG |
HG2C |
HG1C |
238.8 |
237.8 |
HG2C |
CG |
CD |
N |
131.0 |
142.8 |
CD |
CG |
HG2C |
HG1C |
121.1 |
122.1 |
HG2C |
CG |
CD |
HD1C |
250.3 |
261.6 |
HG2C |
CG |
CD |
HD2C |
11.7 |
24.0 |
CG |
CD |
HD1C |
N |
244.0 |
244.8 |
HD1C |
CD |
CG |
HG1C |
11.0 |
23.8 |
HD1C |
CD |
CG |
HG2C |
250.3 |
261.6 |
CG |
CD |
HD1C |
HD2C |
122.0 |
122.4 |
HD1C |
CD |
N |
H |
126.0 |
82.2 |
N |
CD |
HD1C |
HD2C |
238.0 |
237.6 |
CG |
CD |
HD2C |
N |
116.0 |
115.2 |
HD2C |
CD |
CG |
HG1C |
132.4 |
146.1 |
HD2C |
CD |
CG |
HG2C |
11.7 |
24.0 |
CG |
CD |
HD2C |
HD1C |
238.0 |
237.6 |
HD2C |
CD |
N |
H |
4.6 |
319.8 |
N |
CD |
HD2C |
HD1C |
122.0 |
122.4 |