PDB Chemical Component PLA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PLA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.359 1.317
N1 C6 1.357 1.318
C2 C2A 1.505 1.508
C2 C3 1.406 1.387
C2A H2A1 1.115 1.089
C2A H2A2 1.115 1.090
C2A H2A3 1.116 1.090
C3 O3 1.308 1.359
C3 C4 1.416 1.391
O3 HO3 0.950 0.966
C4 C4A 1.443 1.506
C4 C5 1.381 1.385
C4A N 1.396 1.468
C4A H4A1 1.115 1.090
C4A H4A2 1.115 1.089
C5 C6 1.398 1.383
C5 C5A 1.511 1.506
C6 H6 1.103 1.080
C5A O4P 1.379 1.429
C5A H5A1 1.115 1.089
C5A H5A2 1.114 1.091
O4P P 1.613 1.610
P O1P 1.529 1.480
P O2P 1.542 1.609
P O3P 1.571 1.610
O2P HOP2 0.950 0.968
O3P HOP3 0.950 0.967
N CA 1.473 1.468
N HN 1.021 1.008
CA CB1 1.534 1.531
CA CB2 1.515 1.529
CA C 1.548 1.506
CB1 CG 1.528 1.507
CB1 HB11 1.114 1.090
CB1 HB12 1.115 1.091
CB2 HB21 1.115 1.090
CB2 HB22 1.116 1.090
CB2 HB23 1.116 1.090
CG OD1 1.253 1.208
CG OD2 1.274 1.342
OD2 HOD 0.950 0.967
C O 1.234 1.209
C OXT 1.256 1.342
OXT HXT 0.950 0.967

Bond Angles for PLA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 123.6 121.8
N1 C2 C2A 116.6 119.7
N1 C2 C3 119.1 120.7
N1 C6 C5 118.1 120.8
N1 C6 H6 119.5 119.6
C2A C2 C3 124.3 119.6
C2 C2A H2A1 116.6 109.5
C2 C2A H2A2 109.6 109.5
C2 C2A H2A3 109.6 109.4
C2 C3 O3 121.3 120.4
C2 C3 C4 118.7 119.1
H2A1 C2A H2A2 109.7 109.5
H2A1 C2A H2A3 109.6 109.5
H2A2 C2A H2A3 100.5 109.4
O3 C3 C4 119.9 120.5
C3 O3 HO3 121.3 106.8
C3 C4 C4A 117.1 120.9
C3 C4 C5 119.5 118.4
C4A C4 C5 123.3 120.8
C4 C4A N 122.4 109.5
C4 C4A H4A1 107.6 109.4
C4 C4A H4A2 107.6 109.5
C4 C5 C6 120.9 119.2
C4 C5 C5A 124.3 120.4
N C4A H4A1 107.6 109.5
N C4A H4A2 107.6 109.5
C4A N CA 128.1 106.7
C4A N HN 105.7 106.7
H4A1 C4A H4A2 102.1 109.5
C6 C5 C5A 114.8 120.4
C5 C6 H6 122.3 119.5
C5 C5A O4P 120.2 109.5
C5 C5A H5A1 108.4 109.5
C5 C5A H5A2 108.4 109.4
O4P C5A H5A1 108.3 109.5
O4P C5A H5A2 108.4 109.4
C5A O4P P 122.7 106.9
H5A1 C5A H5A2 101.6 109.4
O4P P O1P 104.9 109.4
O4P P O2P 108.1 109.5
O4P P O3P 103.4 109.5
O1P P O2P 115.4 109.5
O1P P O3P 113.4 109.4
O2P P O3P 110.7 109.5
P O2P HOP2 108.1 106.8
P O3P HOP3 103.4 106.7
CA N HN 105.7 106.8
N CA CB1 115.4 109.5
N CA CB2 109.6 109.4
N CA C 108.6 109.5
CB1 CA CB2 107.7 109.4
CB1 CA C 108.0 109.4
CA CB1 CG 114.0 109.5
CA CB1 HB11 110.5 109.4
CA CB1 HB12 110.5 109.5
CB2 CA C 107.3 109.6
CA CB2 HB21 109.6 109.6
CA CB2 HB22 112.2 109.4
CA CB2 HB23 112.2 109.5
CA C O 122.2 120.0
CA C OXT 117.9 120.0
CG CB1 HB11 110.6 109.5
CG CB1 HB12 110.6 109.5
CB1 CG OD1 124.2 120.0
CB1 CG OD2 114.7 120.0
HB11 CB1 HB12 99.7 109.4
HB21 CB2 HB22 112.2 109.4
HB21 CB2 HB23 112.2 109.4
HB22 CB2 HB23 98.2 109.5
OD1 CG OD2 121.1 120.0
CG OD2 HOD 114.7 120.1
O C OXT 118.9 120.0
C OXT HXT 117.9 120.0

Torsion Angles for PLA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 359.2 0.1
C2 N1 C6 H6 179.2 180.0
C2A C2 N1 C3 181.0 179.7
N1 C2 C2A H2A1 179.9 89.9
N1 C2 C2A H2A2 305.3 210.0
N1 C2 C2A H2A3 54.7 329.9
N1 C2 C3 O3 178.5 180.0
N1 C2 C3 C4 1.8 359.5
C6 N1 C2 C2A 180.8 180.0
C6 N1 C2 C3 359.8 0.3
C4 C5 C6 N1 0.3 359.9
N1 C6 C5 C5A 183.2 180.0
C5 C6 N1 H6 180.0 180.1
C2A C2 N1 C6 180.8 180.0
N1 C2 C2A C3 178.9 180.3
C2A C2 C3 O3 357.4 0.3
C2A C2 C3 C4 180.7 179.8
H2A1 C2A C2 H2A2 234.6 239.9
H2A1 C2A C2 H2A3 125.2 120.0
H2A2 C2A C2 H2A3 250.6 240.1
C3 C2 N1 C6 359.8 0.3
N1 C2 C3 C2A 181.1 179.7
C3 C2 C2A H2A1 1.0 269.7
C3 C2 C2A H2A2 126.4 29.7
C3 C2 C2A H2A3 235.8 149.6
O3 C3 C2 C4 176.7 180.5
C2 C3 O3 HO3 180.0 269.4
C2 C3 C4 C4A 177.8 180.3
C2 C3 C4 C5 357.7 0.5
H2A1 C2A C2 C3 1.0 269.7
C2 C2A H2A1 H2A2 125.3 120.0
C2 C2A H2A1 H2A3 234.8 240.0
H2A2 C2A H2A1 H2A3 109.4 120.0
H2A2 C2A C2 C3 126.4 29.7
C2 C2A H2A2 H2A1 230.8 240.0
C2 C2A H2A2 H2A3 115.4 119.9
H2A1 C2A H2A2 H2A3 244.7 240.0
H2A3 C2A C2 C3 235.8 149.6
C2 C2A H2A3 H2A1 129.2 120.0
C2 C2A H2A3 H2A2 244.6 240.1
H2A1 C2A H2A3 H2A2 115.4 120.1
C2 C3 O3 C4 183.3 179.5
O3 C3 C4 C4A 1.0 359.8
O3 C3 C4 C5 180.9 179.9
C2 C3 C4 O3 176.7 180.5
C4 C3 O3 HO3 356.6 89.9
C4A C4 C3 C5 180.1 179.9
C3 C4 C4A N 333.1 270.2
C3 C4 C4A H4A1 98.4 30.2
C3 C4 C4A H4A2 207.7 150.2
C3 C4 C5 C6 1.3 359.8
C3 C4 C5 C5A 178.1 179.7
HO3 O3 C3 C4 356.6 89.9
C3 C4 C4A C5 179.9 180.1
C4A C4 C5 C6 181.2 180.0
C4A C4 C5 C5A 358.0 359.8
N C4A C4 H4A1 234.7 240.0
N C4A C4 H4A2 125.3 120.0
C4 C4A N CA 177.5 179.9
C4 C4A N HN 52.3 293.8
H4A1 C4A C4 H4A2 250.6 240.0
N1 C6 C5 C4 0.3 359.9
C3 C4 C5 C4A 180.1 179.9
C5 C4 C4A N 153.1 90.1
C5 C4 C4A H4A1 278.4 210.1
C5 C4 C4A H4A2 27.8 330.1
C6 C5 C4 C5A 183.3 180.2
C4 C5 C6 H6 180.3 180.0
C4 C5 C5A O4P 68.0 180.1
C4 C5 C5A H5A1 193.2 300.2
C4 C5 C5A H5A2 302.7 60.1
N C4A C4 C5 153.1 90.1
C4 C4A N H4A1 125.3 120.0
C4 C4A N H4A2 234.7 240.0
H4A1 C4A N H4A2 109.4 120.0
CA N C4A HN 125.2 246.1
C4A N CA CB1 61.5 180.0
C4A N CA CB2 299.7 60.1
C4A N CA C 182.9 299.9
H4A1 C4A C4 C5 278.4 210.1
C4 C4A H4A1 N 226.3 240.0
C4 C4A H4A1 H4A2 113.1 120.0
N C4A H4A1 H4A2 246.8 240.0
H4A1 C4A N CA 52.2 60.0
H4A1 C4A N HN 287.0 173.8
H4A2 C4A C4 C5 27.8 330.1
C4 C4A H4A2 N 133.7 120.0
C4 C4A H4A2 H4A1 246.9 240.0
N C4A H4A2 H4A1 113.2 120.0
H4A2 C4A N CA 302.8 300.0
H4A2 C4A N HN 177.6 53.8
N1 C6 C5 H6 180.0 179.9
C4 C5 C6 C5A 177.0 179.8
C6 C5 C5A O4P 244.9 359.9
C6 C5 C5A H5A1 10.1 120.0
C6 C5 C5A H5A2 119.7 240.0
C4 C5 C5A C6 183.1 180.2
C5A C5 C6 H6 3.2 0.1
O4P C5A C5 H5A1 234.8 239.9
O4P C5A C5 H5A2 125.2 119.9
C5 C5A O4P P 175.9 180.0
H5A1 C5A C5 H5A2 250.5 240.0
N1 C6 H6 C5 180.0 180.1
H6 C6 C5 C5A 3.2 0.1
C5 C5A O4P H5A1 125.2 120.1
C5 C5A O4P H5A2 234.8 240.1
H5A1 C5A O4P H5A2 109.5 119.9
C5A O4P P O1P 109.8 60.0
C5A O4P P O2P 346.1 180.0
C5A O4P P O3P 228.8 300.1
C5 C5A H5A1 O4P 228.1 239.9
C5 C5A H5A1 H5A2 114.0 120.0
O4P C5A H5A1 H5A2 246.0 240.1
H5A1 C5A O4P P 50.6 59.9
C5 C5A H5A2 O4P 131.9 120.0
C5 C5A H5A2 H5A1 245.9 240.0
O4P C5A H5A2 H5A1 114.0 120.0
H5A2 C5A O4P P 301.1 300.0
P O4P C5A H5A1 50.6 59.9
P O4P C5A H5A2 301.1 300.0
O1P P O4P O2P 123.6 240.0
O1P P O4P O3P 241.0 119.9
O2P P O4P O3P 117.4 239.9
O4P P O2P HOP2 180.0 180.0
O4P P O3P HOP3 180.0 299.9
O4P P O1P O2P 241.2 120.0
O4P P O1P O3P 112.0 240.0
O2P P O1P O3P 230.8 120.1
O1P P O2P HOP2 63.0 299.9
O1P P O3P HOP3 292.9 180.0
O4P P O2P O1P 117.0 240.1
O4P P O2P O3P 247.5 120.1
O1P P O2P O3P 130.5 240.0
O2P P O3P HOP3 64.5 60.0
O4P P O3P O1P 247.1 119.9
O4P P O3P O2P 115.5 239.9
O1P P O3P O2P 228.5 120.0
O3P P O2P HOP2 292.6 60.0
HOP2 O2P P O3P 292.6 60.0
CA N C4A H4A1 52.2 60.0
CA N C4A H4A2 302.8 300.0
C4A N CA HN 234.8 113.8
CB1 CA N CB2 121.8 119.9
CB1 CA N C 238.6 240.0
N CA CB1 CG 41.8 180.0
N CA CB1 HB11 167.1 300.1
N CA CB1 HB12 276.5 60.0
CB2 CA N C 116.9 120.1
N CA CB2 HB21 180.0 60.0
N CA CB2 HB22 305.3 180.0
N CA CB2 HB23 54.7 299.9
N CA C O 181.6 150.0
N CA C OXT 350.1 330.1
HN N C4A H4A1 287.0 173.8
HN N C4A H4A2 177.6 53.8
C4A N HN CA 138.1 246.2
HN N CA CB1 186.7 66.2
HN N CA CB2 65.0 306.3
HN N CA C 308.1 186.2
CB1 CA N HN 186.7 66.2
N CA CB1 CB2 237.3 240.1
N CA CB1 C 121.7 120.0
CB2 CA CB1 C 244.4 240.0
CB1 CA CB2 HB21 53.7 300.0
CB1 CA CB2 HB22 179.0 60.0
CB1 CA CB2 HB23 288.5 180.0
CB1 CA C O 307.4 270.0
CB1 CA C OXT 115.9 90.1
CG CB1 CA HB11 234.7 240.0
CG CB1 CA HB12 125.3 120.0
CA CB1 CG OD1 56.8 360.0
CA CB1 CG OD2 237.7 180.0
HB11 CB1 CA HB12 250.6 240.1
CB2 CA N HN 65.0 306.3
N CA CB2 CB1 126.3 119.9
N CA CB2 C 242.3 239.9
CB1 CA CB2 C 116.1 119.9
CB2 CA CB1 CG 164.6 300.0
CB2 CA CB1 HB11 289.8 60.0
CB2 CA CB1 HB12 39.3 179.9
CB2 CA C O 63.3 29.9
CB2 CA C OXT 231.8 210.0
HB21 CB2 CA HB22 234.7 240.0
HB21 CB2 CA HB23 125.3 120.0
HB22 CB2 CA HB23 250.6 240.0
C CA N HN 308.1 186.2
N CA C CB1 234.2 240.0
N CA C CB2 118.3 120.1
CB1 CA C CB2 244.1 240.1
C CA CB1 CG 280.1 60.0
C CA CB1 HB11 45.4 180.0
C CA CB1 HB12 154.9 300.0
C CA CB2 HB21 297.7 180.1
C CA CB2 HB22 63.0 300.1
C CA CB2 HB23 172.4 60.0
O C CA OXT 191.5 179.9
CA C OXT HXT 180.0 179.9
CG CB1 CA CB2 164.6 300.0
CG CB1 CA C 280.1 60.0
CA CB1 CG HB11 125.3 120.0
CA CB1 CG HB12 234.8 240.0
HB11 CB1 CG HB12 109.5 120.0
OD1 CG CB1 OD2 179.1 179.9
CB1 CG OD2 HOD 180.0 179.9
HB11 CB1 CA CB2 289.8 60.0
HB11 CB1 CA C 45.4 180.0
CA CB1 HB11 CG 232.8 240.0
CA CB1 HB11 HB12 116.4 119.9
CG CB1 HB11 HB12 243.5 240.0
HB11 CB1 CG OD1 291.6 240.0
HB11 CB1 CG OD2 112.4 60.0
HB12 CB1 CA CB2 39.3 179.9
HB12 CB1 CA C 154.9 300.0
CA CB1 HB12 CG 127.2 120.0
CA CB1 HB12 HB11 243.6 240.1
CG CB1 HB12 HB11 116.4 120.0
HB12 CB1 CG OD1 182.1 120.0
HB12 CB1 CG OD2 2.9 300.0
HB21 CB2 CA C 297.7 180.1
CA CB2 HB21 HB22 125.3 120.0
CA CB2 HB21 HB23 234.7 239.9
HB22 CB2 HB21 HB23 109.4 120.0
HB22 CB2 CA C 63.0 300.1
CA CB2 HB22 HB21 236.1 239.9
CA CB2 HB22 HB23 118.1 120.0
HB21 CB2 HB22 HB23 242.0 240.1
HB23 CB2 CA C 172.4 60.0
CA CB2 HB23 HB21 123.9 120.1
CA CB2 HB23 HB22 241.9 240.0
HB21 CB2 HB23 HB22 118.0 119.9
OD1 CG CB1 HB11 291.6 240.0
OD1 CG CB1 HB12 182.1 120.0
CB1 CG OD1 OD2 180.9 180.1
OD1 CG OD2 HOD 0.8 0.0
OD2 CG CB1 HB11 112.4 60.0
OD2 CG CB1 HB12 2.9 300.0
CB1 CG OD2 OD1 179.2 179.9
CA C O OXT 168.4 180.1
O C OXT HXT 348.8 0.0
CA C OXT O 191.1 179.9