PDB Chemical Component PIT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PIT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C6 |
1.401 |
1.385 |
C1 |
C2 |
1.392 |
1.388 |
C1 |
O3 |
1.358 |
1.359 |
C2 |
C3 |
1.388 |
1.387 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
O2 |
1.356 |
1.359 |
C3 |
C4 |
1.392 |
1.384 |
C4 |
C5 |
1.398 |
1.397 |
C4 |
H4 |
1.080 |
1.080 |
C5 |
C7 |
1.488 |
1.474 |
C5 |
C6 |
1.402 |
1.396 |
C6 |
H6 |
1.080 |
1.080 |
C7 |
C8 |
1.337 |
1.343 |
C7 |
H7 |
1.080 |
1.081 |
C8 |
C9 |
1.488 |
1.473 |
C8 |
H8 |
1.080 |
1.080 |
C9 |
C10 |
1.398 |
1.398 |
C9 |
C14 |
1.402 |
1.397 |
C10 |
C11 |
1.398 |
1.382 |
C10 |
H10 |
1.080 |
1.081 |
C11 |
OAD |
1.353 |
1.359 |
C11 |
C12 |
1.397 |
1.393 |
C12 |
O1 |
1.360 |
1.359 |
C12 |
C13 |
1.393 |
1.387 |
C13 |
H13 |
1.080 |
1.081 |
C13 |
C14 |
1.399 |
1.378 |
C14 |
H14 |
1.081 |
1.081 |
O1 |
H1 |
0.950 |
0.967 |
O2 |
HA |
0.950 |
0.967 |
O3 |
H3 |
0.950 |
0.967 |
OAD |
HAD |
0.950 |
0.967 |
Bond Angles for PIT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
120.8 |
120.1 |
C6 |
C1 |
O3 |
121.5 |
120.0 |
C1 |
C6 |
C5 |
119.2 |
119.9 |
C1 |
C6 |
H6 |
120.4 |
120.0 |
C2 |
C1 |
O3 |
117.7 |
120.0 |
C1 |
C2 |
C3 |
119.7 |
120.2 |
C1 |
C2 |
H2 |
120.1 |
119.8 |
C1 |
O3 |
H3 |
109.5 |
114.0 |
C3 |
C2 |
H2 |
120.1 |
119.9 |
C2 |
C3 |
O2 |
119.1 |
119.9 |
C2 |
C3 |
C4 |
120.2 |
120.1 |
C4 |
C3 |
O2 |
120.7 |
119.9 |
C3 |
O2 |
HA |
109.5 |
114.0 |
C3 |
C4 |
C5 |
120.4 |
119.9 |
C3 |
C4 |
H4 |
119.8 |
120.1 |
C5 |
C4 |
H4 |
119.8 |
120.1 |
C4 |
C5 |
C7 |
118.8 |
120.1 |
C4 |
C5 |
C6 |
119.7 |
119.8 |
C6 |
C5 |
C7 |
121.5 |
120.1 |
C5 |
C7 |
C8 |
116.8 |
120.0 |
C5 |
C7 |
H7 |
121.6 |
120.0 |
C5 |
C6 |
H6 |
120.4 |
120.1 |
C8 |
C7 |
H7 |
121.6 |
120.0 |
C7 |
C8 |
C9 |
127.7 |
120.0 |
C7 |
C8 |
H8 |
116.2 |
120.0 |
C9 |
C8 |
H8 |
116.1 |
120.0 |
C8 |
C9 |
C10 |
122.9 |
120.1 |
C8 |
C9 |
C14 |
117.8 |
120.1 |
C10 |
C9 |
C14 |
119.3 |
119.8 |
C9 |
C10 |
C11 |
119.1 |
119.9 |
C9 |
C10 |
H10 |
120.4 |
120.1 |
C9 |
C14 |
C13 |
121.6 |
120.0 |
C9 |
C14 |
H14 |
119.2 |
120.0 |
C11 |
C10 |
H10 |
120.4 |
120.0 |
C10 |
C11 |
OAD |
118.8 |
120.0 |
C10 |
C11 |
C12 |
121.2 |
119.9 |
C12 |
C11 |
OAD |
120.0 |
120.0 |
C11 |
OAD |
HAD |
109.5 |
114.0 |
C11 |
C12 |
O1 |
121.2 |
119.9 |
C11 |
C12 |
C13 |
120.0 |
120.2 |
C13 |
C12 |
O1 |
118.8 |
119.9 |
C12 |
O1 |
H1 |
109.5 |
114.0 |
C12 |
C13 |
H13 |
120.6 |
119.9 |
C12 |
C13 |
C14 |
118.7 |
120.2 |
C14 |
C13 |
H13 |
120.6 |
119.9 |
C13 |
C14 |
H14 |
119.2 |
120.0 |
Torsion Angles for PIT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
O3 |
180.0 |
179.8 |
C6 |
C1 |
C2 |
C3 |
359.9 |
360.0 |
C6 |
C1 |
C2 |
H2 |
179.9 |
180.0 |
C6 |
C1 |
O3 |
H3 |
72.2 |
90.0 |
C4 |
C5 |
C6 |
C1 |
359.5 |
360.0 |
C1 |
C6 |
C5 |
C7 |
179.9 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
C6 |
C1 |
C2 |
O3 |
180.0 |
180.2 |
C2 |
C1 |
C6 |
C5 |
0.5 |
0.0 |
C2 |
C1 |
C6 |
H6 |
180.5 |
179.9 |
C2 |
C1 |
O3 |
H3 |
252.2 |
270.3 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
O2 |
180.3 |
179.9 |
C1 |
C2 |
C3 |
C4 |
359.7 |
360.0 |
C2 |
C1 |
O3 |
C6 |
180.0 |
180.2 |
O3 |
C1 |
C6 |
C5 |
180.5 |
180.3 |
O3 |
C1 |
C6 |
H6 |
0.5 |
0.2 |
O3 |
C1 |
C2 |
C3 |
179.9 |
179.8 |
O3 |
C1 |
C2 |
H2 |
359.9 |
359.7 |
C3 |
C2 |
C1 |
C6 |
359.9 |
360.0 |
C3 |
C2 |
C1 |
O3 |
179.9 |
179.8 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
O2 |
179.3 |
180.0 |
C2 |
C3 |
O2 |
HA |
226.6 |
90.0 |
C2 |
C3 |
C4 |
C5 |
0.4 |
0.1 |
C2 |
C3 |
C4 |
H4 |
180.4 |
180.0 |
H2 |
C2 |
C1 |
C6 |
179.9 |
180.0 |
H2 |
C2 |
C1 |
O3 |
359.9 |
359.7 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
O2 |
0.3 |
360.0 |
H2 |
C2 |
C3 |
C4 |
179.7 |
180.0 |
O2 |
C3 |
C2 |
H2 |
0.3 |
360.0 |
C2 |
C3 |
O2 |
C4 |
179.3 |
180.0 |
O2 |
C3 |
C4 |
C5 |
179.7 |
180.1 |
O2 |
C3 |
C4 |
H4 |
359.7 |
360.0 |
C4 |
C3 |
C2 |
H2 |
179.7 |
180.0 |
C2 |
C3 |
C4 |
O2 |
180.7 |
180.0 |
C4 |
C3 |
O2 |
HA |
47.3 |
270.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
C3 |
C4 |
C5 |
C7 |
179.7 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.0 |
360.0 |
C1 |
C6 |
C5 |
C4 |
359.5 |
360.0 |
C5 |
C4 |
C3 |
O2 |
179.7 |
180.1 |
C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
C7 |
180.3 |
180.0 |
C4 |
C5 |
C7 |
C8 |
0.3 |
180.0 |
C4 |
C5 |
C7 |
H7 |
180.3 |
359.9 |
C4 |
C5 |
C6 |
H6 |
179.6 |
180.1 |
H4 |
C4 |
C3 |
O2 |
359.7 |
360.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.1 |
H4 |
C4 |
C5 |
C7 |
359.7 |
0.1 |
H4 |
C4 |
C5 |
C6 |
180.0 |
180.1 |
C7 |
C5 |
C4 |
H4 |
359.7 |
0.1 |
C4 |
C5 |
C7 |
C6 |
180.3 |
180.0 |
C7 |
C5 |
C6 |
H6 |
359.9 |
0.1 |
C8 |
C7 |
C5 |
H7 |
180.0 |
180.1 |
C5 |
C7 |
C8 |
C9 |
180.0 |
180.0 |
C5 |
C7 |
C8 |
H8 |
0.0 |
359.9 |
C5 |
C6 |
C1 |
O3 |
180.5 |
180.3 |
C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
H4 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
C7 |
179.7 |
180.0 |
C6 |
C5 |
C7 |
C8 |
180.0 |
360.0 |
C6 |
C5 |
C7 |
H7 |
360.0 |
179.9 |
H6 |
C6 |
C1 |
O3 |
0.5 |
0.2 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
H6 |
C6 |
C5 |
C7 |
359.9 |
0.1 |
C5 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
C9 |
C8 |
C7 |
H8 |
180.0 |
180.1 |
C7 |
C8 |
C9 |
C10 |
0.3 |
180.0 |
C7 |
C8 |
C9 |
C14 |
180.2 |
359.7 |
C5 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
H7 |
C7 |
C8 |
C9 |
0.0 |
0.1 |
H7 |
C7 |
C8 |
H8 |
180.0 |
180.0 |
C9 |
C8 |
C7 |
H7 |
0.0 |
0.1 |
C7 |
C8 |
C9 |
H8 |
180.0 |
179.9 |
C10 |
C9 |
C8 |
C14 |
180.1 |
180.3 |
C8 |
C9 |
C10 |
C11 |
179.7 |
180.0 |
C8 |
C9 |
C10 |
H10 |
359.8 |
359.9 |
C8 |
C9 |
C14 |
C13 |
180.1 |
179.7 |
C8 |
C9 |
C14 |
H14 |
0.1 |
360.0 |
H8 |
C8 |
C7 |
H7 |
180.0 |
180.0 |
C7 |
C8 |
H8 |
C9 |
180.0 |
180.1 |
H8 |
C8 |
C9 |
C10 |
180.3 |
0.1 |
H8 |
C8 |
C9 |
C14 |
0.2 |
179.7 |
C10 |
C9 |
C8 |
H8 |
180.3 |
0.1 |
C8 |
C9 |
C10 |
C14 |
179.9 |
179.7 |
C10 |
C9 |
C14 |
C13 |
0.0 |
359.4 |
C10 |
C9 |
C14 |
H14 |
180.0 |
179.7 |
C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
OAD |
180.2 |
179.9 |
C9 |
C10 |
C11 |
C12 |
0.2 |
0.0 |
C14 |
C9 |
C8 |
H8 |
0.2 |
179.7 |
C8 |
C9 |
C14 |
C10 |
180.1 |
180.3 |
C14 |
C9 |
C10 |
C11 |
359.9 |
0.3 |
C14 |
C9 |
C10 |
H10 |
179.9 |
180.3 |
C12 |
C13 |
C14 |
C9 |
360.0 |
0.6 |
C9 |
C14 |
C13 |
H13 |
180.0 |
180.3 |
C13 |
C14 |
C9 |
H14 |
180.0 |
179.7 |
C11 |
C10 |
C9 |
C14 |
359.9 |
0.3 |
C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
OAD |
180.0 |
180.1 |
C10 |
C11 |
OAD |
HAD |
310.5 |
90.0 |
C10 |
C11 |
C12 |
O1 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
C13 |
359.8 |
360.0 |
H10 |
C10 |
C9 |
C14 |
179.9 |
180.3 |
C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
H10 |
C10 |
C11 |
OAD |
0.2 |
360.0 |
H10 |
C10 |
C11 |
C12 |
180.2 |
180.1 |
OAD |
C11 |
C10 |
H10 |
0.2 |
360.0 |
C10 |
C11 |
OAD |
C12 |
180.0 |
180.1 |
OAD |
C11 |
C12 |
O1 |
359.9 |
0.1 |
OAD |
C11 |
C12 |
C13 |
179.8 |
180.1 |
C12 |
C11 |
C10 |
H10 |
180.2 |
180.1 |
C10 |
C11 |
C12 |
OAD |
180.0 |
179.9 |
C12 |
C11 |
OAD |
HAD |
130.5 |
269.9 |
C13 |
C12 |
C11 |
O1 |
179.8 |
180.0 |
C11 |
C12 |
O1 |
H1 |
322.0 |
89.9 |
C11 |
C12 |
C13 |
H13 |
180.1 |
180.0 |
C11 |
C12 |
C13 |
C14 |
0.1 |
359.7 |
O1 |
C12 |
C11 |
OAD |
359.9 |
0.1 |
C11 |
C12 |
O1 |
C13 |
179.8 |
180.0 |
O1 |
C12 |
C13 |
H13 |
359.9 |
360.0 |
O1 |
C12 |
C13 |
C14 |
179.9 |
179.7 |
C9 |
C14 |
C13 |
C12 |
360.0 |
0.6 |
C13 |
C12 |
C11 |
OAD |
179.8 |
180.1 |
C11 |
C12 |
C13 |
O1 |
180.2 |
180.0 |
C13 |
C12 |
O1 |
H1 |
142.2 |
270.0 |
C14 |
C13 |
C12 |
H13 |
180.0 |
179.7 |
C12 |
C13 |
C14 |
H14 |
180.0 |
180.3 |
H13 |
C13 |
C12 |
O1 |
359.9 |
360.0 |
C12 |
C13 |
H13 |
C14 |
180.0 |
179.7 |
H13 |
C13 |
C14 |
H14 |
360.0 |
0.0 |
C9 |
C14 |
C13 |
H14 |
180.0 |
180.3 |
C14 |
C13 |
C12 |
O1 |
179.9 |
179.7 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.3 |
C9 |
C14 |
H14 |
C13 |
180.0 |
179.7 |
H14 |
C14 |
C13 |
H13 |
360.0 |
0.0 |