PDB Chemical Component PIP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PIP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.454 |
1.466 |
N1 |
C6 |
1.456 |
1.466 |
N1 |
HN1 |
1.020 |
1.009 |
C2 |
C3 |
1.510 |
1.529 |
C2 |
H21 |
1.114 |
1.090 |
C2 |
H22 |
1.115 |
1.090 |
C3 |
C4 |
1.521 |
1.531 |
C3 |
H31 |
1.114 |
1.091 |
C3 |
H32 |
1.115 |
1.090 |
C4 |
C5 |
1.526 |
1.531 |
C4 |
H41 |
1.114 |
1.090 |
C4 |
H42 |
1.115 |
1.090 |
C5 |
C6 |
1.515 |
1.528 |
C5 |
H51 |
1.115 |
1.089 |
C5 |
H52 |
1.115 |
1.091 |
C6 |
H61 |
1.116 |
1.090 |
C6 |
H62 |
1.114 |
1.090 |
Bond Angles for PIP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
113.1 |
107.3 |
C2 |
N1 |
HN1 |
110.9 |
106.7 |
N1 |
C2 |
C3 |
107.3 |
109.8 |
N1 |
C2 |
H21 |
113.0 |
109.5 |
N1 |
C2 |
H22 |
113.0 |
109.4 |
C6 |
N1 |
HN1 |
110.9 |
106.8 |
N1 |
C6 |
C5 |
106.5 |
109.8 |
N1 |
C6 |
H61 |
113.3 |
109.4 |
N1 |
C6 |
H62 |
113.3 |
109.4 |
C3 |
C2 |
H21 |
113.0 |
109.5 |
C3 |
C2 |
H22 |
113.1 |
109.4 |
C2 |
C3 |
C4 |
107.5 |
109.2 |
C2 |
C3 |
H31 |
112.9 |
109.4 |
C2 |
C3 |
H32 |
112.9 |
109.5 |
H21 |
C2 |
H22 |
97.5 |
109.4 |
C4 |
C3 |
H31 |
112.9 |
109.5 |
C4 |
C3 |
H32 |
112.9 |
109.6 |
C3 |
C4 |
C5 |
106.9 |
108.9 |
C3 |
C4 |
H41 |
113.2 |
109.5 |
C3 |
C4 |
H42 |
113.2 |
109.6 |
H31 |
C3 |
H32 |
97.5 |
109.5 |
C5 |
C4 |
H41 |
113.1 |
109.5 |
C5 |
C4 |
H42 |
113.1 |
109.6 |
C4 |
C5 |
C6 |
113.2 |
109.2 |
C4 |
C5 |
H51 |
110.9 |
109.5 |
C4 |
C5 |
H52 |
110.9 |
109.5 |
H41 |
C4 |
H42 |
97.3 |
109.6 |
C6 |
C5 |
H51 |
110.9 |
109.6 |
C6 |
C5 |
H52 |
110.8 |
109.5 |
C5 |
C6 |
H61 |
113.3 |
109.5 |
C5 |
C6 |
H62 |
113.3 |
109.4 |
H51 |
C5 |
H52 |
99.4 |
109.5 |
H61 |
C6 |
H62 |
97.1 |
109.3 |
Torsion Angles for PIP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
HN1 |
125.3 |
114.2 |
C2 |
N1 |
C6 |
C5 |
59.7 |
65.6 |
C2 |
N1 |
C6 |
H61 |
185.0 |
185.8 |
C2 |
N1 |
C6 |
H62 |
294.5 |
305.5 |
C3 |
C2 |
N1 |
H21 |
234.8 |
120.2 |
C3 |
C2 |
N1 |
H22 |
125.3 |
240.0 |
N1 |
C2 |
C3 |
C4 |
65.0 |
61.3 |
N1 |
C2 |
C3 |
H31 |
190.3 |
301.4 |
N1 |
C2 |
C3 |
H32 |
299.8 |
181.3 |
H21 |
C2 |
N1 |
H22 |
250.5 |
119.8 |
C2 |
N1 |
C6 |
HN1 |
234.7 |
245.8 |
C6 |
N1 |
C2 |
C3 |
293.5 |
294.5 |
C6 |
N1 |
C2 |
H21 |
58.7 |
174.3 |
C6 |
N1 |
C2 |
H22 |
168.2 |
54.5 |
C4 |
C5 |
C6 |
N1 |
304.7 |
298.7 |
N1 |
C6 |
C5 |
H51 |
179.4 |
178.7 |
N1 |
C6 |
C5 |
H52 |
70.0 |
58.6 |
C5 |
C6 |
N1 |
H61 |
234.8 |
239.8 |
C5 |
C6 |
N1 |
H62 |
125.3 |
120.1 |
H61 |
C6 |
N1 |
H62 |
250.5 |
240.3 |
C2 |
N1 |
HN1 |
C6 |
126.6 |
114.6 |
HN1 |
N1 |
C2 |
C3 |
168.2 |
180.3 |
HN1 |
N1 |
C2 |
H21 |
293.4 |
60.1 |
HN1 |
N1 |
C2 |
H22 |
42.9 |
300.3 |
HN1 |
N1 |
C6 |
C5 |
185.0 |
179.7 |
HN1 |
N1 |
C6 |
H61 |
310.3 |
299.9 |
HN1 |
N1 |
C6 |
H62 |
59.7 |
59.6 |
C3 |
C2 |
N1 |
C6 |
293.5 |
294.5 |
C3 |
C2 |
N1 |
HN1 |
168.2 |
180.3 |
N1 |
C2 |
C3 |
H21 |
125.2 |
239.8 |
N1 |
C2 |
C3 |
H22 |
234.8 |
120.0 |
H21 |
C2 |
C3 |
H22 |
109.5 |
240.2 |
C4 |
C3 |
C2 |
H31 |
234.7 |
119.9 |
C4 |
C3 |
C2 |
H32 |
125.3 |
240.0 |
C2 |
C3 |
C4 |
C5 |
299.5 |
304.5 |
C2 |
C3 |
C4 |
H41 |
64.7 |
64.3 |
C2 |
C3 |
C4 |
H42 |
174.3 |
184.6 |
H31 |
C3 |
C2 |
H32 |
250.5 |
120.1 |
H21 |
C2 |
N1 |
C6 |
58.7 |
174.3 |
H21 |
C2 |
N1 |
HN1 |
293.4 |
60.1 |
N1 |
C2 |
H21 |
C3 |
237.9 |
120.4 |
N1 |
C2 |
H21 |
H22 |
118.9 |
240.2 |
C3 |
C2 |
H21 |
H22 |
241.0 |
119.8 |
H21 |
C2 |
C3 |
C4 |
299.8 |
181.5 |
H21 |
C2 |
C3 |
H31 |
65.0 |
61.6 |
H21 |
C2 |
C3 |
H32 |
174.5 |
301.5 |
H22 |
C2 |
N1 |
C6 |
168.2 |
54.5 |
H22 |
C2 |
N1 |
HN1 |
42.9 |
300.3 |
N1 |
C2 |
H22 |
C3 |
122.1 |
239.7 |
N1 |
C2 |
H22 |
H21 |
241.1 |
119.9 |
C3 |
C2 |
H22 |
H21 |
119.0 |
240.1 |
H22 |
C2 |
C3 |
C4 |
190.2 |
301.3 |
H22 |
C2 |
C3 |
H31 |
315.5 |
181.4 |
H22 |
C2 |
C3 |
H32 |
65.0 |
61.3 |
C4 |
C3 |
C2 |
H21 |
299.8 |
181.5 |
C4 |
C3 |
C2 |
H22 |
190.2 |
301.3 |
C2 |
C3 |
C4 |
H31 |
125.3 |
240.1 |
C2 |
C3 |
C4 |
H32 |
234.8 |
120.0 |
H31 |
C3 |
C4 |
H32 |
109.5 |
239.9 |
C5 |
C4 |
C3 |
H41 |
234.8 |
240.2 |
C5 |
C4 |
C3 |
H42 |
125.2 |
119.9 |
C3 |
C4 |
C5 |
C6 |
57.6 |
55.5 |
C3 |
C4 |
C5 |
H51 |
182.9 |
175.5 |
C3 |
C4 |
C5 |
H52 |
292.3 |
295.6 |
H41 |
C4 |
C3 |
H42 |
250.4 |
239.7 |
H31 |
C3 |
C2 |
H21 |
65.0 |
61.6 |
H31 |
C3 |
C2 |
H22 |
315.5 |
181.4 |
C2 |
C3 |
H31 |
C4 |
237.7 |
119.7 |
C2 |
C3 |
H31 |
H32 |
118.8 |
239.9 |
C4 |
C3 |
H31 |
H32 |
241.1 |
120.2 |
H31 |
C3 |
C4 |
C5 |
174.2 |
64.3 |
H31 |
C3 |
C4 |
H41 |
299.5 |
184.2 |
H31 |
C3 |
C4 |
H42 |
49.0 |
304.5 |
H32 |
C3 |
C2 |
H21 |
174.5 |
301.5 |
H32 |
C3 |
C2 |
H22 |
65.0 |
61.3 |
C2 |
C3 |
H32 |
C4 |
122.3 |
240.2 |
C2 |
C3 |
H32 |
H31 |
241.1 |
120.0 |
C4 |
C3 |
H32 |
H31 |
118.9 |
239.8 |
H32 |
C3 |
C4 |
C5 |
64.7 |
184.5 |
H32 |
C3 |
C4 |
H41 |
190.0 |
304.3 |
H32 |
C3 |
C4 |
H42 |
299.5 |
64.6 |
N1 |
C6 |
C5 |
C4 |
304.7 |
298.7 |
C5 |
C4 |
C3 |
H31 |
174.2 |
64.3 |
C5 |
C4 |
C3 |
H32 |
64.7 |
184.5 |
C3 |
C4 |
C5 |
H41 |
125.3 |
119.8 |
C3 |
C4 |
C5 |
H42 |
234.7 |
240.1 |
H41 |
C4 |
C5 |
H42 |
109.5 |
120.3 |
C6 |
C5 |
C4 |
H51 |
234.7 |
240.0 |
C6 |
C5 |
C4 |
H52 |
125.3 |
119.9 |
C4 |
C5 |
C6 |
H61 |
179.5 |
178.5 |
C4 |
C5 |
C6 |
H62 |
70.0 |
58.7 |
H51 |
C5 |
C4 |
H52 |
250.6 |
239.9 |
H41 |
C4 |
C3 |
H31 |
299.5 |
184.2 |
H41 |
C4 |
C3 |
H32 |
190.0 |
304.3 |
C3 |
C4 |
H41 |
C5 |
238.2 |
240.6 |
C3 |
C4 |
H41 |
H42 |
119.2 |
120.3 |
C5 |
C4 |
H41 |
H42 |
240.9 |
239.7 |
H41 |
C4 |
C5 |
C6 |
292.3 |
295.7 |
H41 |
C4 |
C5 |
H51 |
57.6 |
55.7 |
H41 |
C4 |
C5 |
H52 |
167.0 |
175.8 |
H42 |
C4 |
C3 |
H31 |
49.0 |
304.5 |
H42 |
C4 |
C3 |
H32 |
299.5 |
64.6 |
C3 |
C4 |
H42 |
C5 |
121.8 |
119.5 |
C3 |
C4 |
H42 |
H41 |
240.8 |
239.7 |
C5 |
C4 |
H42 |
H41 |
119.1 |
120.3 |
H42 |
C4 |
C5 |
C6 |
182.8 |
175.4 |
H42 |
C4 |
C5 |
H51 |
308.1 |
295.4 |
H42 |
C4 |
C5 |
H52 |
57.5 |
55.5 |
C5 |
C6 |
N1 |
HN1 |
185.0 |
179.7 |
N1 |
C6 |
C5 |
H61 |
125.3 |
120.2 |
N1 |
C6 |
C5 |
H62 |
234.7 |
239.9 |
C6 |
C5 |
C4 |
H41 |
292.3 |
295.7 |
C6 |
C5 |
C4 |
H42 |
182.8 |
175.4 |
C4 |
C5 |
C6 |
H51 |
125.3 |
120.0 |
C4 |
C5 |
C6 |
H52 |
234.7 |
240.1 |
H51 |
C5 |
C6 |
H52 |
109.4 |
120.1 |
H61 |
C6 |
C5 |
H62 |
109.4 |
119.7 |
H51 |
C5 |
C4 |
H41 |
57.6 |
55.7 |
H51 |
C5 |
C4 |
H42 |
308.1 |
295.4 |
C4 |
C5 |
H51 |
C6 |
233.4 |
240.2 |
C4 |
C5 |
H51 |
H52 |
116.7 |
120.1 |
C6 |
C5 |
H51 |
H52 |
243.3 |
239.9 |
H51 |
C5 |
C6 |
H61 |
54.1 |
58.5 |
H51 |
C5 |
C6 |
H62 |
304.7 |
298.8 |
H52 |
C5 |
C4 |
H41 |
167.0 |
175.8 |
H52 |
C5 |
C4 |
H42 |
57.5 |
55.5 |
C4 |
C5 |
H52 |
C6 |
126.6 |
119.8 |
C4 |
C5 |
H52 |
H51 |
243.3 |
239.9 |
C6 |
C5 |
H52 |
H51 |
116.7 |
120.2 |
H52 |
C5 |
C6 |
H61 |
304.8 |
298.4 |
H52 |
C5 |
C6 |
H62 |
195.3 |
178.7 |
H61 |
C6 |
N1 |
HN1 |
310.3 |
299.9 |
N1 |
C6 |
H61 |
C5 |
238.5 |
239.6 |
N1 |
C6 |
H61 |
H62 |
119.3 |
119.8 |
H61 |
C6 |
C5 |
H51 |
54.1 |
58.5 |
H61 |
C6 |
C5 |
H52 |
304.8 |
298.4 |
C5 |
C6 |
H61 |
H62 |
240.8 |
240.2 |
H62 |
C6 |
N1 |
HN1 |
59.7 |
59.6 |
N1 |
C6 |
H62 |
C5 |
121.6 |
120.4 |
N1 |
C6 |
H62 |
H61 |
240.8 |
240.2 |
H62 |
C6 |
C5 |
H51 |
304.7 |
298.8 |
H62 |
C6 |
C5 |
H52 |
195.3 |
178.7 |
C5 |
C6 |
H62 |
H61 |
119.2 |
119.8 |