PDB Chemical Component PIM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PIM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.396 1.352
N1 C5 1.345 1.376
N1 HN1 1.019 0.969
C2 N3 1.243 1.305
C2 H2 1.103 1.079
N3 C4 1.325 1.337
C4 C5 1.350 1.360
C4 H4 1.104 1.080
C5 C6 1.512 1.479
C6 C7 1.406 1.396
C6 C11 1.350 1.394
C7 C8 1.421 1.379
C7 H7 1.103 1.080
C8 C9 1.391 1.383
C8 H8 1.103 1.080
C9 C10 1.393 1.384
C9 H9 1.103 1.080
C10 C11 1.401 1.379
C10 H10 1.103 1.081
C11 H11 1.103 1.080

Bond Angles for PIM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C5 106.5 107.1
C2 N1 HN1 128.2 126.4
N1 C2 N3 108.4 108.9
N1 C2 H2 130.4 125.5
C5 N1 HN1 125.3 126.5
N1 C5 C4 105.8 106.5
N1 C5 C6 123.2 126.7
N3 C2 H2 121.2 125.5
C2 N3 C4 110.5 109.6
N3 C4 C5 108.7 107.9
N3 C4 H4 124.9 126.1
C5 C4 H4 126.5 126.0
C4 C5 C6 130.9 126.8
C5 C6 C7 118.6 120.1
C5 C6 C11 120.3 120.2
C7 C6 C11 120.7 119.7
C6 C7 C8 118.6 119.8
C6 C7 H7 120.2 120.1
C6 C11 C10 122.1 119.9
C6 C11 H11 117.0 120.0
C8 C7 H7 121.2 120.1
C7 C8 C9 118.6 120.2
C7 C8 H8 121.7 120.0
C9 C8 H8 119.6 119.8
C8 C9 C10 122.1 120.2
C8 C9 H9 118.9 119.9
C10 C9 H9 119.0 119.8
C9 C10 C11 117.2 120.2
C9 C10 H10 121.1 119.9
C11 C10 H10 121.6 119.9
C10 C11 H11 120.9 120.1

Torsion Angles for PIM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 N1 C2 HN1 180.0 180.2
C2 N1 C5 C4 357.1 359.7
C2 N1 C5 C6 179.1 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 358.7 0.1
C2 N1 C5 HN1 180.0 179.8
C5 N1 C2 N3 2.6 0.2
C5 N1 C2 H2 182.7 180.2
N3 C4 C5 N1 2.2 0.4
N1 C5 C4 H4 182.1 180.1
C4 C5 N1 C6 178.1 179.6
N1 C5 C6 C7 301.2 139.7
N1 C5 C6 C11 114.1 319.3
C2 N1 HN1 C5 180.1 180.2
HN1 N1 C2 N3 182.6 180.0
HN1 N1 C2 H2 2.6 360.0
HN1 N1 C5 C4 177.2 179.9
HN1 N1 C5 C6 359.1 0.2
N3 C2 N1 C5 2.6 0.2
N3 C2 N1 HN1 182.6 180.0
N1 C2 N3 H2 180.0 180.0
C2 N3 C4 C5 359.5 359.7
C2 N3 C4 H4 179.5 180.0
H2 C2 N1 C5 182.7 180.2
H2 C2 N1 HN1 2.6 360.0
N1 C2 H2 N3 179.9 180.0
H2 C2 N3 C4 178.7 180.1
N1 C5 C4 N3 2.2 0.4
C4 N3 C2 H2 178.7 180.1
C5 C4 N3 H4 179.9 179.7
N3 C4 C5 C6 180.0 180.0
C4 C5 N1 HN1 177.2 179.9
N1 C5 C4 C6 182.1 180.4
N3 C4 C5 H4 180.1 180.3
C4 C5 C6 C7 123.6 320.1
C4 C5 C6 C11 296.6 139.7
N3 C4 H4 C5 179.9 179.7
H4 C4 C5 C6 360.0 359.7
C6 C5 N1 HN1 359.1 0.2
N1 C5 C6 C4 177.5 179.6
C6 C5 C4 H4 360.0 359.7
C7 C6 C5 C11 187.0 180.4
C5 C6 C7 C8 175.5 180.0
C5 C6 C7 H7 355.4 359.9
C5 C6 C11 C10 182.2 179.7
C5 C6 C11 H11 2.3 0.2
C5 C6 C7 C11 172.9 179.6
C7 C6 C11 C10 355.0 359.4
C7 C6 C11 H11 175.1 179.9
C8 C7 C6 H7 180.0 180.1
C6 C7 C8 C9 356.8 359.9
C6 C7 C8 H8 176.8 179.9
C5 C6 C11 C7 187.2 180.4
C11 C6 C7 C8 2.5 0.4
C11 C6 C7 H7 182.5 180.3
C9 C10 C11 C6 7.8 0.6
C6 C11 C10 H10 187.9 180.3
C10 C11 C6 H11 179.9 179.5
C8 C7 C6 C11 2.5 0.4
C6 C7 C8 H7 180.0 179.9
C9 C8 C7 H8 180.0 180.0
C7 C8 C9 C10 6.4 0.1
C7 C8 C9 H9 186.4 180.0
H7 C7 C6 C11 182.5 180.3
C6 C7 H7 C8 180.0 180.1
H7 C7 C8 C9 176.9 180.0
H7 C7 C8 H8 356.8 0.0
C9 C8 C7 H7 176.9 180.0
C7 C8 C9 H8 180.0 180.0
C10 C9 C8 H9 180.0 180.1
C8 C9 C10 C11 351.4 359.6
C8 C9 C10 H10 171.4 179.9
H8 C8 C7 H7 356.8 0.0
C7 C8 H8 C9 180.0 180.0
H8 C8 C9 C10 186.5 180.1
H8 C8 C9 H9 6.5 359.9
C6 C11 C10 C9 7.8 0.6
C10 C9 C8 H8 186.5 180.1
C8 C9 C10 H9 180.0 179.9
C11 C10 C9 H10 180.0 179.7
C9 C10 C11 H11 187.8 180.1
H9 C9 C8 H8 6.5 359.9
C8 C9 H9 C10 180.0 180.1
H9 C9 C10 C11 171.4 179.8
H9 C9 C10 H10 351.4 0.1
C6 C11 C10 H11 180.1 180.5
C11 C10 C9 H9 171.4 179.8
C9 C10 C11 H10 180.0 180.3
H10 C10 C9 H9 351.4 0.1
C9 C10 H10 C11 180.0 179.7
H10 C10 C11 H11 7.8 359.8
C6 C11 H11 C10 179.9 179.5
H11 C11 C10 H10 7.8 359.8