PDB Chemical Component PIM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PIM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.396 |
1.352 |
N1 |
C5 |
1.345 |
1.376 |
N1 |
HN1 |
1.019 |
0.969 |
C2 |
N3 |
1.243 |
1.305 |
C2 |
H2 |
1.103 |
1.079 |
N3 |
C4 |
1.325 |
1.337 |
C4 |
C5 |
1.350 |
1.360 |
C4 |
H4 |
1.104 |
1.080 |
C5 |
C6 |
1.512 |
1.479 |
C6 |
C7 |
1.406 |
1.396 |
C6 |
C11 |
1.350 |
1.394 |
C7 |
C8 |
1.421 |
1.379 |
C7 |
H7 |
1.103 |
1.080 |
C8 |
C9 |
1.391 |
1.383 |
C8 |
H8 |
1.103 |
1.080 |
C9 |
C10 |
1.393 |
1.384 |
C9 |
H9 |
1.103 |
1.080 |
C10 |
C11 |
1.401 |
1.379 |
C10 |
H10 |
1.103 |
1.081 |
C11 |
H11 |
1.103 |
1.080 |
Bond Angles for PIM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C5 |
106.5 |
107.1 |
C2 |
N1 |
HN1 |
128.2 |
126.4 |
N1 |
C2 |
N3 |
108.4 |
108.9 |
N1 |
C2 |
H2 |
130.4 |
125.5 |
C5 |
N1 |
HN1 |
125.3 |
126.5 |
N1 |
C5 |
C4 |
105.8 |
106.5 |
N1 |
C5 |
C6 |
123.2 |
126.7 |
N3 |
C2 |
H2 |
121.2 |
125.5 |
C2 |
N3 |
C4 |
110.5 |
109.6 |
N3 |
C4 |
C5 |
108.7 |
107.9 |
N3 |
C4 |
H4 |
124.9 |
126.1 |
C5 |
C4 |
H4 |
126.5 |
126.0 |
C4 |
C5 |
C6 |
130.9 |
126.8 |
C5 |
C6 |
C7 |
118.6 |
120.1 |
C5 |
C6 |
C11 |
120.3 |
120.2 |
C7 |
C6 |
C11 |
120.7 |
119.7 |
C6 |
C7 |
C8 |
118.6 |
119.8 |
C6 |
C7 |
H7 |
120.2 |
120.1 |
C6 |
C11 |
C10 |
122.1 |
119.9 |
C6 |
C11 |
H11 |
117.0 |
120.0 |
C8 |
C7 |
H7 |
121.2 |
120.1 |
C7 |
C8 |
C9 |
118.6 |
120.2 |
C7 |
C8 |
H8 |
121.7 |
120.0 |
C9 |
C8 |
H8 |
119.6 |
119.8 |
C8 |
C9 |
C10 |
122.1 |
120.2 |
C8 |
C9 |
H9 |
118.9 |
119.9 |
C10 |
C9 |
H9 |
119.0 |
119.8 |
C9 |
C10 |
C11 |
117.2 |
120.2 |
C9 |
C10 |
H10 |
121.1 |
119.9 |
C11 |
C10 |
H10 |
121.6 |
119.9 |
C10 |
C11 |
H11 |
120.9 |
120.1 |
Torsion Angles for PIM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
N1 |
C2 |
HN1 |
180.0 |
180.2 |
C2 |
N1 |
C5 |
C4 |
357.1 |
359.7 |
C2 |
N1 |
C5 |
C6 |
179.1 |
180.0 |
N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
N1 |
C2 |
N3 |
C4 |
358.7 |
0.1 |
C2 |
N1 |
C5 |
HN1 |
180.0 |
179.8 |
C5 |
N1 |
C2 |
N3 |
2.6 |
0.2 |
C5 |
N1 |
C2 |
H2 |
182.7 |
180.2 |
N3 |
C4 |
C5 |
N1 |
2.2 |
0.4 |
N1 |
C5 |
C4 |
H4 |
182.1 |
180.1 |
C4 |
C5 |
N1 |
C6 |
178.1 |
179.6 |
N1 |
C5 |
C6 |
C7 |
301.2 |
139.7 |
N1 |
C5 |
C6 |
C11 |
114.1 |
319.3 |
C2 |
N1 |
HN1 |
C5 |
180.1 |
180.2 |
HN1 |
N1 |
C2 |
N3 |
182.6 |
180.0 |
HN1 |
N1 |
C2 |
H2 |
2.6 |
360.0 |
HN1 |
N1 |
C5 |
C4 |
177.2 |
179.9 |
HN1 |
N1 |
C5 |
C6 |
359.1 |
0.2 |
N3 |
C2 |
N1 |
C5 |
2.6 |
0.2 |
N3 |
C2 |
N1 |
HN1 |
182.6 |
180.0 |
N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
C5 |
359.5 |
359.7 |
C2 |
N3 |
C4 |
H4 |
179.5 |
180.0 |
H2 |
C2 |
N1 |
C5 |
182.7 |
180.2 |
H2 |
C2 |
N1 |
HN1 |
2.6 |
360.0 |
N1 |
C2 |
H2 |
N3 |
179.9 |
180.0 |
H2 |
C2 |
N3 |
C4 |
178.7 |
180.1 |
N1 |
C5 |
C4 |
N3 |
2.2 |
0.4 |
C4 |
N3 |
C2 |
H2 |
178.7 |
180.1 |
C5 |
C4 |
N3 |
H4 |
179.9 |
179.7 |
N3 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
C4 |
C5 |
N1 |
HN1 |
177.2 |
179.9 |
N1 |
C5 |
C4 |
C6 |
182.1 |
180.4 |
N3 |
C4 |
C5 |
H4 |
180.1 |
180.3 |
C4 |
C5 |
C6 |
C7 |
123.6 |
320.1 |
C4 |
C5 |
C6 |
C11 |
296.6 |
139.7 |
N3 |
C4 |
H4 |
C5 |
179.9 |
179.7 |
H4 |
C4 |
C5 |
C6 |
360.0 |
359.7 |
C6 |
C5 |
N1 |
HN1 |
359.1 |
0.2 |
N1 |
C5 |
C6 |
C4 |
177.5 |
179.6 |
C6 |
C5 |
C4 |
H4 |
360.0 |
359.7 |
C7 |
C6 |
C5 |
C11 |
187.0 |
180.4 |
C5 |
C6 |
C7 |
C8 |
175.5 |
180.0 |
C5 |
C6 |
C7 |
H7 |
355.4 |
359.9 |
C5 |
C6 |
C11 |
C10 |
182.2 |
179.7 |
C5 |
C6 |
C11 |
H11 |
2.3 |
0.2 |
C5 |
C6 |
C7 |
C11 |
172.9 |
179.6 |
C7 |
C6 |
C11 |
C10 |
355.0 |
359.4 |
C7 |
C6 |
C11 |
H11 |
175.1 |
179.9 |
C8 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
C6 |
C7 |
C8 |
C9 |
356.8 |
359.9 |
C6 |
C7 |
C8 |
H8 |
176.8 |
179.9 |
C5 |
C6 |
C11 |
C7 |
187.2 |
180.4 |
C11 |
C6 |
C7 |
C8 |
2.5 |
0.4 |
C11 |
C6 |
C7 |
H7 |
182.5 |
180.3 |
C9 |
C10 |
C11 |
C6 |
7.8 |
0.6 |
C6 |
C11 |
C10 |
H10 |
187.9 |
180.3 |
C10 |
C11 |
C6 |
H11 |
179.9 |
179.5 |
C8 |
C7 |
C6 |
C11 |
2.5 |
0.4 |
C6 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
C7 |
C8 |
C9 |
C10 |
6.4 |
0.1 |
C7 |
C8 |
C9 |
H9 |
186.4 |
180.0 |
H7 |
C7 |
C6 |
C11 |
182.5 |
180.3 |
C6 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
H7 |
C7 |
C8 |
C9 |
176.9 |
180.0 |
H7 |
C7 |
C8 |
H8 |
356.8 |
0.0 |
C9 |
C8 |
C7 |
H7 |
176.9 |
180.0 |
C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.1 |
C8 |
C9 |
C10 |
C11 |
351.4 |
359.6 |
C8 |
C9 |
C10 |
H10 |
171.4 |
179.9 |
H8 |
C8 |
C7 |
H7 |
356.8 |
0.0 |
C7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
H8 |
C8 |
C9 |
C10 |
186.5 |
180.1 |
H8 |
C8 |
C9 |
H9 |
6.5 |
359.9 |
C6 |
C11 |
C10 |
C9 |
7.8 |
0.6 |
C10 |
C9 |
C8 |
H8 |
186.5 |
180.1 |
C8 |
C9 |
C10 |
H9 |
180.0 |
179.9 |
C11 |
C10 |
C9 |
H10 |
180.0 |
179.7 |
C9 |
C10 |
C11 |
H11 |
187.8 |
180.1 |
H9 |
C9 |
C8 |
H8 |
6.5 |
359.9 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.1 |
H9 |
C9 |
C10 |
C11 |
171.4 |
179.8 |
H9 |
C9 |
C10 |
H10 |
351.4 |
0.1 |
C6 |
C11 |
C10 |
H11 |
180.1 |
180.5 |
C11 |
C10 |
C9 |
H9 |
171.4 |
179.8 |
C9 |
C10 |
C11 |
H10 |
180.0 |
180.3 |
H10 |
C10 |
C9 |
H9 |
351.4 |
0.1 |
C9 |
C10 |
H10 |
C11 |
180.0 |
179.7 |
H10 |
C10 |
C11 |
H11 |
7.8 |
359.8 |
C6 |
C11 |
H11 |
C10 |
179.9 |
179.5 |
H11 |
C11 |
C10 |
H10 |
7.8 |
359.8 |