PDB Chemical Component PHL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PHL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.479 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.516 |
1.531 |
| CA |
CB |
1.531 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.393 |
1.429 |
| C |
HC1 |
1.100 |
1.090 |
| C |
HC2 |
1.100 |
1.090 |
| O |
HO |
0.950 |
0.967 |
| CB |
CG |
1.496 |
1.507 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
CD1 |
1.388 |
1.382 |
| CG |
CD2 |
1.394 |
1.382 |
| CD1 |
CE1 |
1.375 |
1.382 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
CE2 |
1.372 |
1.382 |
| CD2 |
HD2 |
1.080 |
1.081 |
| CE1 |
CZ |
1.398 |
1.382 |
| CE1 |
HE1 |
1.080 |
1.081 |
| CE2 |
CZ |
1.379 |
1.382 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CZ |
HZ |
1.080 |
1.080 |
Bond Angles for PHL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
C |
109.6 |
109.4 |
| N |
CA |
CB |
107.7 |
109.5 |
| N |
CA |
HA |
111.5 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
| C |
CA |
CB |
112.1 |
109.5 |
| C |
CA |
HA |
107.1 |
109.4 |
| CA |
C |
O |
109.7 |
109.5 |
| CA |
C |
HC1 |
109.4 |
109.4 |
| CA |
C |
HC2 |
109.3 |
109.5 |
| CB |
CA |
HA |
109.0 |
109.5 |
| CA |
CB |
CG |
114.0 |
109.5 |
| CA |
CB |
HB2 |
108.0 |
109.5 |
| CA |
CB |
HB3 |
106.9 |
109.4 |
| O |
C |
HC1 |
109.4 |
109.5 |
| O |
C |
HC2 |
109.4 |
109.5 |
| C |
O |
HO |
109.5 |
114.0 |
| HC1 |
C |
HC2 |
109.6 |
109.5 |
| CG |
CB |
HB2 |
108.0 |
109.5 |
| CG |
CB |
HB3 |
107.0 |
109.5 |
| CB |
CG |
CD1 |
121.4 |
120.0 |
| CB |
CG |
CD2 |
120.6 |
120.0 |
| HB2 |
CB |
HB3 |
113.1 |
109.5 |
| CD1 |
CG |
CD2 |
117.9 |
120.0 |
| CG |
CD1 |
CE1 |
122.0 |
120.0 |
| CG |
CD1 |
HD1 |
119.0 |
120.0 |
| CG |
CD2 |
CE2 |
120.8 |
120.0 |
| CG |
CD2 |
HD2 |
119.6 |
120.0 |
| CE1 |
CD1 |
HD1 |
119.0 |
120.0 |
| CD1 |
CE1 |
CZ |
118.9 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.5 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.6 |
119.9 |
| CD2 |
CE2 |
CZ |
120.6 |
120.0 |
| CD2 |
CE2 |
HE2 |
119.7 |
120.0 |
| CZ |
CE1 |
HE1 |
120.6 |
120.0 |
| CE1 |
CZ |
CE2 |
119.7 |
120.0 |
| CE1 |
CZ |
HZ |
120.2 |
120.0 |
| CZ |
CE2 |
HE2 |
119.7 |
120.0 |
| CE2 |
CZ |
HZ |
120.1 |
120.0 |
Torsion Angles for PHL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C |
CA |
N |
CB |
122.1 |
120.0 |
| C |
CA |
N |
HA |
241.6 |
240.0 |
| N |
CA |
C |
O |
168.5 |
65.0 |
| N |
CA |
C |
HC1 |
288.5 |
185.0 |
| N |
CA |
C |
HC2 |
48.6 |
305.0 |
| CB |
CA |
N |
HA |
119.5 |
120.0 |
| N |
CA |
CB |
CG |
296.6 |
295.0 |
| N |
CA |
CB |
HB2 |
56.7 |
55.0 |
| N |
CA |
CB |
HB3 |
178.6 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
C |
333.3 |
60.0 |
| H |
N |
CA |
CB |
211.2 |
300.1 |
| H |
N |
CA |
HA |
91.7 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
C |
93.3 |
183.9 |
| H2 |
N |
CA |
CB |
331.2 |
64.0 |
| H2 |
N |
CA |
HA |
211.7 |
303.9 |
| C |
CA |
N |
H |
333.3 |
60.0 |
| C |
CA |
N |
H2 |
93.3 |
183.9 |
| N |
CA |
C |
CB |
240.6 |
240.0 |
| N |
CA |
C |
HA |
121.1 |
120.0 |
| CB |
CA |
C |
HA |
240.5 |
240.0 |
| C |
CA |
CB |
CG |
176.1 |
175.0 |
| C |
CA |
CB |
HB2 |
296.1 |
295.0 |
| C |
CA |
CB |
HB3 |
58.1 |
55.0 |
| O |
C |
CA |
HC1 |
240.0 |
240.0 |
| O |
C |
CA |
HC2 |
119.9 |
120.0 |
| CA |
C |
O |
HO |
106.2 |
179.9 |
| HC1 |
C |
CA |
HC2 |
239.9 |
240.0 |
| CB |
CA |
N |
H |
211.2 |
300.1 |
| CB |
CA |
N |
H2 |
331.2 |
64.0 |
| N |
CA |
CB |
C |
120.6 |
120.0 |
| N |
CA |
CB |
HA |
238.9 |
239.9 |
| C |
CA |
CB |
HA |
118.3 |
120.0 |
| CB |
CA |
C |
O |
288.0 |
185.0 |
| CB |
CA |
C |
HC1 |
48.0 |
304.9 |
| CB |
CA |
C |
HC2 |
168.0 |
65.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
118.0 |
120.0 |
| CA |
CB |
CG |
CD1 |
286.1 |
90.0 |
| CA |
CB |
CG |
CD2 |
103.6 |
269.8 |
| HB2 |
CB |
CA |
HB3 |
238.0 |
240.0 |
| HA |
CA |
N |
H |
91.7 |
180.0 |
| HA |
CA |
N |
H2 |
211.7 |
303.9 |
| N |
CA |
HA |
C |
240.1 |
240.0 |
| N |
CA |
HA |
CB |
118.7 |
120.0 |
| C |
CA |
HA |
CB |
238.6 |
240.0 |
| HA |
CA |
C |
O |
47.4 |
305.0 |
| HA |
CA |
C |
HC1 |
167.4 |
64.9 |
| HA |
CA |
C |
HC2 |
287.5 |
185.0 |
| HA |
CA |
CB |
CG |
57.8 |
55.0 |
| HA |
CA |
CB |
HB2 |
177.8 |
175.1 |
| HA |
CA |
CB |
HB3 |
299.8 |
295.0 |
| O |
C |
CA |
CB |
288.0 |
185.0 |
| O |
C |
CA |
HA |
47.4 |
305.0 |
| CA |
C |
O |
HC1 |
120.0 |
120.0 |
| CA |
C |
O |
HC2 |
240.1 |
240.0 |
| HC1 |
C |
O |
HC2 |
120.1 |
120.0 |
| HC1 |
C |
CA |
CB |
48.0 |
304.9 |
| HC1 |
C |
CA |
HA |
167.4 |
64.9 |
| CA |
C |
HC1 |
O |
239.8 |
240.0 |
| CA |
C |
HC1 |
HC2 |
119.9 |
120.0 |
| O |
C |
HC1 |
HC2 |
240.1 |
240.0 |
| HC1 |
C |
O |
HO |
346.2 |
60.0 |
| HC2 |
C |
CA |
CB |
168.0 |
65.0 |
| HC2 |
C |
CA |
HA |
287.5 |
185.0 |
| CA |
C |
HC2 |
O |
120.2 |
120.0 |
| CA |
C |
HC2 |
HC1 |
240.1 |
240.0 |
| O |
C |
HC2 |
HC1 |
119.9 |
120.0 |
| HC2 |
C |
O |
HO |
226.1 |
300.0 |
| HO |
O |
C |
HC1 |
346.2 |
60.0 |
| HO |
O |
C |
HC2 |
226.1 |
300.0 |
| CG |
CB |
CA |
HA |
57.8 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
242.0 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
122.0 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
182.5 |
180.2 |
| CB |
CG |
CD1 |
CE1 |
177.9 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
357.9 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
180.1 |
179.9 |
| CB |
CG |
CD2 |
HD2 |
0.2 |
360.0 |
| HB2 |
CB |
CA |
HA |
177.8 |
175.1 |
| CA |
CB |
HB2 |
CG |
236.2 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
118.1 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
241.9 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
166.1 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
343.6 |
149.7 |
| HB3 |
CB |
CA |
HA |
299.8 |
295.0 |
| CA |
CB |
HB3 |
CG |
122.5 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
241.3 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
118.7 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
44.1 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
221.6 |
29.7 |
| CD1 |
CG |
CB |
HB2 |
166.1 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
44.1 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
177.6 |
179.8 |
| CD1 |
CG |
CD2 |
CE2 |
357.7 |
359.7 |
| CD1 |
CG |
CD2 |
HD2 |
177.8 |
179.7 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
2.4 |
0.0 |
| CG |
CD1 |
CE1 |
HE1 |
182.4 |
179.9 |
| CD2 |
CG |
CB |
HB2 |
343.6 |
149.7 |
| CD2 |
CG |
CB |
HB3 |
221.6 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
182.4 |
180.2 |
| CD2 |
CG |
CD1 |
CE1 |
0.3 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
180.3 |
180.2 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
1.5 |
0.1 |
| CG |
CD2 |
CE2 |
HE2 |
181.5 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
0.3 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.1 |
| CD1 |
CE1 |
CZ |
CE2 |
356.8 |
359.8 |
| CD1 |
CE1 |
CZ |
HZ |
176.8 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
180.3 |
180.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
182.4 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
2.4 |
360.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
1.3 |
0.2 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.1 |
| CD2 |
CE2 |
CZ |
HZ |
181.3 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
CZ |
181.5 |
180.1 |
| HD2 |
CD2 |
CE2 |
HE2 |
1.5 |
359.9 |
| CZ |
CE1 |
CD1 |
HD1 |
182.4 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
179.9 |
| CD2 |
CE2 |
CZ |
CE1 |
1.3 |
0.2 |
| CE1 |
CZ |
CE2 |
HE2 |
181.3 |
180.3 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
179.8 |
| HE1 |
CE1 |
CD1 |
HD1 |
2.4 |
360.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.1 |
| HE1 |
CE1 |
CZ |
CE2 |
176.8 |
179.8 |
| HE1 |
CE1 |
CZ |
HZ |
356.8 |
0.0 |
| CZ |
CE2 |
CD2 |
HD2 |
181.5 |
180.1 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
179.9 |
| CE2 |
CZ |
CE1 |
HE1 |
176.8 |
179.8 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.2 |
| HE2 |
CE2 |
CD2 |
HD2 |
1.5 |
359.9 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.1 |
| HE2 |
CE2 |
CZ |
HZ |
1.3 |
0.1 |
| HZ |
CZ |
CE1 |
HE1 |
356.8 |
0.0 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
179.8 |
| HZ |
CZ |
CE2 |
HE2 |
1.3 |
0.1 |