PDB Chemical Component PHI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PHI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.481 |
1.468 |
| N |
H |
1.020 |
1.010 |
| N |
H2 |
1.020 |
1.009 |
| CA |
CB |
1.513 |
1.529 |
| CA |
C |
1.525 |
1.507 |
| CA |
HA |
1.116 |
1.090 |
| CB |
CG |
1.522 |
1.507 |
| CB |
HB2 |
1.114 |
1.089 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
CD1 |
1.397 |
1.381 |
| CG |
CD2 |
1.398 |
1.382 |
| CD1 |
CE1 |
1.399 |
1.381 |
| CD1 |
HD1 |
1.103 |
1.080 |
| CD2 |
CE2 |
1.389 |
1.381 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE1 |
CZ |
1.397 |
1.383 |
| CE1 |
HE1 |
1.103 |
1.080 |
| CE2 |
CZ |
1.400 |
1.383 |
| CE2 |
HE2 |
1.103 |
1.080 |
| CZ |
I |
1.359 |
2.095 |
| C |
O |
1.237 |
1.208 |
| C |
OXT |
1.319 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for PHI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
110.3 |
106.7 |
| CA |
N |
H2 |
111.9 |
106.7 |
| N |
CA |
CB |
110.3 |
109.5 |
| N |
CA |
C |
107.8 |
109.5 |
| N |
CA |
HA |
111.1 |
109.4 |
| H |
N |
H2 |
111.9 |
106.6 |
| CB |
CA |
C |
112.5 |
109.5 |
| CB |
CA |
HA |
106.3 |
109.5 |
| CA |
CB |
CG |
119.3 |
109.5 |
| CA |
CB |
HB2 |
108.7 |
109.5 |
| CA |
CB |
HB3 |
108.7 |
109.5 |
| C |
CA |
HA |
108.8 |
109.4 |
| CA |
C |
O |
119.2 |
120.0 |
| CA |
C |
OXT |
119.8 |
120.0 |
| CG |
CB |
HB2 |
108.7 |
109.5 |
| CG |
CB |
HB3 |
108.7 |
109.5 |
| CB |
CG |
CD1 |
122.7 |
120.0 |
| CB |
CG |
CD2 |
123.0 |
119.9 |
| HB2 |
CB |
HB3 |
101.4 |
109.4 |
| CD1 |
CG |
CD2 |
114.4 |
120.1 |
| CG |
CD1 |
CE1 |
121.7 |
120.0 |
| CG |
CD1 |
HD1 |
119.1 |
120.0 |
| CG |
CD2 |
CE2 |
123.2 |
119.9 |
| CG |
CD2 |
HD2 |
118.8 |
120.1 |
| CE1 |
CD1 |
HD1 |
119.2 |
120.0 |
| CD1 |
CE1 |
CZ |
124.4 |
120.0 |
| CD1 |
CE1 |
HE1 |
117.9 |
120.0 |
| CE2 |
CD2 |
HD2 |
118.1 |
120.0 |
| CD2 |
CE2 |
CZ |
123.3 |
120.1 |
| CD2 |
CE2 |
HE2 |
117.9 |
120.0 |
| CZ |
CE1 |
HE1 |
117.7 |
120.0 |
| CE1 |
CZ |
CE2 |
112.9 |
119.9 |
| CE1 |
CZ |
I |
124.4 |
120.1 |
| CZ |
CE2 |
HE2 |
118.7 |
119.9 |
| CE2 |
CZ |
I |
122.7 |
120.0 |
| O |
C |
OXT |
120.9 |
120.0 |
| C |
OXT |
HXT |
119.8 |
119.9 |
Torsion Angles for PHI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.2 |
113.7 |
| CB |
CA |
N |
C |
236.8 |
239.9 |
| CB |
CA |
N |
HA |
117.6 |
120.0 |
| N |
CA |
CB |
CG |
293.7 |
300.1 |
| N |
CA |
CB |
HB2 |
58.9 |
60.1 |
| N |
CA |
CB |
HB3 |
168.4 |
180.0 |
| C |
CA |
N |
HA |
240.8 |
240.1 |
| N |
CA |
C |
O |
323.7 |
329.9 |
| N |
CA |
C |
OXT |
140.7 |
150.0 |
| CA |
N |
H |
H2 |
234.8 |
246.3 |
| H |
N |
CA |
CB |
180.0 |
53.7 |
| H |
N |
CA |
C |
303.1 |
173.8 |
| H |
N |
CA |
HA |
62.3 |
293.7 |
| CA |
N |
H2 |
H |
124.3 |
113.7 |
| H2 |
N |
CA |
CB |
54.7 |
300.0 |
| H2 |
N |
CA |
C |
177.9 |
60.1 |
| H2 |
N |
CA |
HA |
297.1 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
120.4 |
120.1 |
| N |
CA |
CB |
HA |
239.5 |
240.1 |
| C |
CA |
CB |
HA |
119.1 |
120.0 |
| CB |
CA |
C |
O |
85.6 |
90.0 |
| CB |
CA |
C |
OXT |
262.6 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.8 |
240.0 |
| CG |
CB |
CA |
HB3 |
125.3 |
120.0 |
| CA |
CB |
CG |
CD1 |
93.5 |
90.0 |
| CA |
CB |
CG |
CD2 |
272.4 |
269.7 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.1 |
| C |
CA |
N |
H |
303.1 |
173.8 |
| C |
CA |
N |
H2 |
177.9 |
60.1 |
| N |
CA |
C |
CB |
238.2 |
239.9 |
| N |
CA |
C |
HA |
120.6 |
119.9 |
| CB |
CA |
C |
HA |
242.4 |
240.0 |
| C |
CA |
CB |
CG |
173.3 |
180.0 |
| C |
CA |
CB |
HB2 |
298.5 |
300.0 |
| C |
CA |
CB |
HB3 |
48.0 |
60.0 |
| O |
C |
CA |
OXT |
183.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
62.3 |
293.7 |
| HA |
CA |
N |
H2 |
297.1 |
180.0 |
| N |
CA |
HA |
CB |
120.0 |
120.0 |
| N |
CA |
HA |
C |
241.4 |
240.0 |
| CB |
CA |
HA |
C |
121.4 |
120.1 |
| HA |
CA |
CB |
CG |
54.2 |
60.0 |
| HA |
CA |
CB |
HB2 |
179.4 |
180.0 |
| HA |
CA |
CB |
HB3 |
288.9 |
299.9 |
| HA |
CA |
C |
O |
203.2 |
210.0 |
| HA |
CA |
C |
OXT |
20.1 |
30.0 |
| CG |
CB |
CA |
C |
173.3 |
180.0 |
| CG |
CB |
CA |
HA |
54.2 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.2 |
120.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
119.9 |
| CD1 |
CG |
CB |
CD2 |
181.1 |
180.2 |
| CB |
CG |
CD1 |
CE1 |
179.8 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.7 |
0.0 |
| CB |
CG |
CD2 |
CE2 |
180.6 |
179.7 |
| CB |
CG |
CD2 |
HD2 |
0.6 |
0.2 |
| HB2 |
CB |
CA |
C |
298.5 |
300.0 |
| HB2 |
CB |
CA |
HA |
179.4 |
180.0 |
| CA |
CB |
HB2 |
CG |
228.8 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
114.4 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
245.6 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
328.2 |
329.9 |
| HB2 |
CB |
CG |
CD2 |
147.2 |
149.7 |
| HB3 |
CB |
CA |
C |
48.0 |
60.0 |
| HB3 |
CB |
CA |
HA |
288.9 |
299.9 |
| CA |
CB |
HB3 |
CG |
131.3 |
120.1 |
| CA |
CB |
HB3 |
HB2 |
245.6 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
114.4 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
218.7 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
37.7 |
29.8 |
| CD1 |
CG |
CB |
HB2 |
328.2 |
329.9 |
| CD1 |
CG |
CB |
HB3 |
218.7 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
179.0 |
179.8 |
| CD1 |
CG |
CD2 |
CE2 |
359.6 |
359.5 |
| CD1 |
CG |
CD2 |
HD2 |
179.6 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
359.1 |
360.0 |
| CG |
CD1 |
CE1 |
HE1 |
179.0 |
180.0 |
| CD2 |
CG |
CB |
HB2 |
147.2 |
149.7 |
| CD2 |
CG |
CB |
HB3 |
37.7 |
29.8 |
| CB |
CG |
CD2 |
CD1 |
181.0 |
180.2 |
| CD2 |
CG |
CD1 |
CE1 |
0.7 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
180.7 |
180.3 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.5 |
| CG |
CD2 |
CE2 |
CZ |
0.3 |
0.5 |
| CG |
CD2 |
CE2 |
HE2 |
180.3 |
180.3 |
| CE1 |
CD1 |
CG |
CD2 |
0.7 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
0.7 |
0.0 |
| CD1 |
CE1 |
CZ |
I |
179.9 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
180.7 |
180.3 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
179.1 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
359.0 |
359.9 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.5 |
| CE1 |
CZ |
CE2 |
CD2 |
359.6 |
359.7 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.3 |
| CD2 |
CE2 |
CZ |
I |
180.4 |
179.7 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.5 |
| HD2 |
CD2 |
CE2 |
CZ |
180.2 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.3 |
359.7 |
| CZ |
CE1 |
CD1 |
HD1 |
179.1 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.6 |
359.7 |
| CE1 |
CZ |
CE2 |
HE2 |
179.6 |
180.0 |
| CE2 |
CZ |
CE1 |
I |
180.8 |
180.0 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.0 |
359.9 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
CE2 |
180.7 |
180.1 |
| HE1 |
CE1 |
CZ |
I |
359.9 |
0.1 |
| CZ |
CE2 |
CD2 |
HD2 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
179.7 |
| CE2 |
CZ |
CE1 |
HE1 |
180.7 |
180.1 |
| CE1 |
CZ |
CE2 |
I |
179.2 |
180.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.3 |
359.7 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.3 |
| HE2 |
CE2 |
CZ |
I |
0.4 |
360.0 |
| I |
CZ |
CE1 |
HE1 |
359.9 |
0.1 |
| CE1 |
CZ |
I |
CE2 |
180.9 |
180.0 |
| I |
CZ |
CE2 |
HE2 |
0.4 |
360.0 |
| O |
C |
CA |
HA |
203.2 |
210.0 |
| CA |
C |
O |
OXT |
177.0 |
180.0 |
| O |
C |
OXT |
HXT |
357.0 |
360.0 |
| OXT |
C |
CA |
HA |
20.1 |
30.0 |
| CA |
C |
OXT |
O |
183.1 |
180.0 |