PDB Chemical Component PGN

Ideal Model

Chemical Description

Name 2'-DEOXYGUANOSINE-3',5'-DIPHOSPHATE
Formula C10 H15 N5 O10 P2
Formal charge 0
Molecular weight 427.201 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 42
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3
Bond count 44
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxyguanosine 3',5'-bis(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O3
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O3
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)OP(=O)(O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C10H15N5O10P2/c11-10-13-8-7(9(16)14-10)12-3-15(8)6-1-4(25-27(20,21)22)5(24-6)2-23-26(17,18)19/h3-6H,1-2H2,(H2,17,18,19)(H2,20,21,22)(H3,11,13,14,16)/t4-,5+,6+/m0/s1
InChIKey descriptor HLOADLNVPDIIIB-KVQBGUIXSA-N

Status Information

Last modified 2011-06-04
Created 2001-07-02
Release status REL
Processing site RCSB