PDB Chemical Component PGF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PGF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C7 |
C8 |
1.535 |
1.530 |
C7 |
H71 |
1.100 |
1.091 |
C7 |
H72 |
1.100 |
1.090 |
C7 |
H73 |
1.100 |
1.090 |
C8 |
O5 |
1.438 |
1.430 |
C8 |
H81 |
1.100 |
1.090 |
C8 |
H82 |
1.100 |
1.090 |
O5 |
C9 |
1.457 |
1.429 |
C9 |
C10 |
1.528 |
1.529 |
C9 |
H91 |
1.100 |
1.090 |
C9 |
H92 |
1.100 |
1.090 |
C10 |
O6 |
1.465 |
1.429 |
C10 |
H101 |
1.100 |
1.089 |
C10 |
H102 |
1.100 |
1.091 |
O6 |
C11 |
1.426 |
1.429 |
C11 |
C12 |
1.506 |
1.530 |
C11 |
H111 |
1.100 |
1.090 |
C11 |
H112 |
1.100 |
1.090 |
C12 |
O7 |
1.433 |
1.429 |
C12 |
H121 |
1.099 |
1.089 |
C12 |
H122 |
1.100 |
1.090 |
O7 |
C13 |
1.445 |
1.429 |
C13 |
C14 |
1.517 |
1.530 |
C13 |
H131 |
1.099 |
1.090 |
C13 |
H132 |
1.100 |
1.090 |
C14 |
O8 |
1.447 |
1.429 |
C14 |
H141 |
1.101 |
1.090 |
C14 |
H142 |
1.100 |
1.090 |
O8 |
C15 |
1.455 |
1.429 |
C15 |
H151 |
1.100 |
1.090 |
C15 |
H152 |
1.100 |
1.090 |
C15 |
H153 |
1.100 |
1.090 |
Bond Angles for PGF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
C7 |
H71 |
109.5 |
109.5 |
C8 |
C7 |
H72 |
109.5 |
109.5 |
C8 |
C7 |
H73 |
109.5 |
109.5 |
C7 |
C8 |
O5 |
110.4 |
109.4 |
C7 |
C8 |
H81 |
108.9 |
109.5 |
C7 |
C8 |
H82 |
109.1 |
109.5 |
H71 |
C7 |
H72 |
109.5 |
109.5 |
H71 |
C7 |
H73 |
109.4 |
109.4 |
H72 |
C7 |
H73 |
109.4 |
109.5 |
O5 |
C8 |
H81 |
108.9 |
109.5 |
O5 |
C8 |
H82 |
109.2 |
109.4 |
C8 |
O5 |
C9 |
109.9 |
106.8 |
H81 |
C8 |
H82 |
110.2 |
109.5 |
O5 |
C9 |
C10 |
111.0 |
109.5 |
O5 |
C9 |
H91 |
108.6 |
109.4 |
O5 |
C9 |
H92 |
109.0 |
109.5 |
C10 |
C9 |
H91 |
108.6 |
109.5 |
C10 |
C9 |
H92 |
109.0 |
109.5 |
C9 |
C10 |
O6 |
108.5 |
109.5 |
C9 |
C10 |
H101 |
110.0 |
109.5 |
C9 |
C10 |
H102 |
109.8 |
109.5 |
H91 |
C9 |
H92 |
110.6 |
109.5 |
O6 |
C10 |
H101 |
110.0 |
109.5 |
O6 |
C10 |
H102 |
109.8 |
109.4 |
C10 |
O6 |
C11 |
111.2 |
106.8 |
H101 |
C10 |
H102 |
108.7 |
109.4 |
O6 |
C11 |
C12 |
109.3 |
109.5 |
O6 |
C11 |
H111 |
109.5 |
109.4 |
O6 |
C11 |
H112 |
109.5 |
109.5 |
C12 |
C11 |
H111 |
109.5 |
109.5 |
C12 |
C11 |
H112 |
109.5 |
109.5 |
C11 |
C12 |
O7 |
105.0 |
109.5 |
C11 |
C12 |
H121 |
111.9 |
109.5 |
C11 |
C12 |
H122 |
111.0 |
109.5 |
H111 |
C11 |
H112 |
109.4 |
109.5 |
O7 |
C12 |
H121 |
111.9 |
109.5 |
O7 |
C12 |
H122 |
110.9 |
109.4 |
C12 |
O7 |
C13 |
113.0 |
106.8 |
H121 |
C12 |
H122 |
106.1 |
109.5 |
O7 |
C13 |
C14 |
107.3 |
109.5 |
O7 |
C13 |
H131 |
110.7 |
109.4 |
O7 |
C13 |
H132 |
110.2 |
109.5 |
C14 |
C13 |
H131 |
110.7 |
109.5 |
C14 |
C13 |
H132 |
110.2 |
109.5 |
C13 |
C14 |
O8 |
105.9 |
109.5 |
C13 |
C14 |
H141 |
111.5 |
109.4 |
C13 |
C14 |
H142 |
110.7 |
109.5 |
H131 |
C13 |
H132 |
107.8 |
109.5 |
O8 |
C14 |
H141 |
111.5 |
109.5 |
O8 |
C14 |
H142 |
110.7 |
109.4 |
C14 |
O8 |
C15 |
112.6 |
106.8 |
H141 |
C14 |
H142 |
106.7 |
109.5 |
O8 |
C15 |
H151 |
109.5 |
109.5 |
O8 |
C15 |
H152 |
109.5 |
109.4 |
O8 |
C15 |
H153 |
109.5 |
109.4 |
H151 |
C15 |
H152 |
109.5 |
109.5 |
H151 |
C15 |
H153 |
109.5 |
109.5 |
H152 |
C15 |
H153 |
109.4 |
109.5 |
Torsion Angles for PGF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H71 |
C7 |
C8 |
H72 |
120.0 |
239.9 |
H71 |
C7 |
C8 |
H73 |
240.0 |
119.9 |
H72 |
C7 |
C8 |
H73 |
120.0 |
240.0 |
O5 |
C8 |
C7 |
H81 |
119.6 |
240.0 |
O5 |
C8 |
C7 |
H82 |
240.0 |
119.9 |
C7 |
C8 |
O5 |
C9 |
67.1 |
180.0 |
H81 |
C8 |
C7 |
H82 |
120.4 |
239.9 |
C8 |
C7 |
H71 |
H72 |
240.0 |
120.1 |
C8 |
C7 |
H71 |
H73 |
120.0 |
240.1 |
H71 |
C7 |
C8 |
O5 |
66.1 |
300.0 |
H71 |
C7 |
C8 |
H81 |
306.6 |
59.9 |
H71 |
C7 |
C8 |
H82 |
186.1 |
180.0 |
H72 |
C7 |
H71 |
H73 |
240.1 |
120.0 |
C8 |
C7 |
H72 |
H71 |
120.0 |
240.0 |
C8 |
C7 |
H72 |
H73 |
240.0 |
120.0 |
H72 |
C7 |
C8 |
O5 |
306.1 |
60.0 |
H72 |
C7 |
C8 |
H81 |
186.5 |
180.0 |
H72 |
C7 |
C8 |
H82 |
66.1 |
300.1 |
H71 |
C7 |
H72 |
H73 |
120.0 |
240.0 |
C8 |
C7 |
H73 |
H71 |
240.0 |
120.0 |
C8 |
C7 |
H73 |
H72 |
120.0 |
240.0 |
H73 |
C7 |
C8 |
O5 |
186.1 |
180.0 |
H73 |
C7 |
C8 |
H81 |
66.5 |
300.0 |
H73 |
C7 |
C8 |
H82 |
306.1 |
60.1 |
H71 |
C7 |
H73 |
H72 |
240.0 |
120.0 |
O5 |
C8 |
C7 |
H71 |
66.1 |
300.0 |
O5 |
C8 |
C7 |
H72 |
306.1 |
60.0 |
O5 |
C8 |
C7 |
H73 |
186.1 |
180.0 |
C7 |
C8 |
O5 |
H81 |
240.4 |
120.0 |
C7 |
C8 |
O5 |
H82 |
120.0 |
240.0 |
H81 |
C8 |
O5 |
H82 |
239.6 |
120.0 |
C8 |
O5 |
C9 |
C10 |
149.5 |
180.0 |
C8 |
O5 |
C9 |
H91 |
30.1 |
300.0 |
C8 |
O5 |
C9 |
H92 |
269.5 |
60.0 |
H81 |
C8 |
C7 |
H71 |
306.6 |
59.9 |
H81 |
C8 |
C7 |
H72 |
186.5 |
180.0 |
H81 |
C8 |
C7 |
H73 |
66.5 |
300.0 |
C7 |
C8 |
H81 |
O5 |
120.5 |
240.0 |
C7 |
C8 |
H81 |
H82 |
240.3 |
120.1 |
O5 |
C8 |
H81 |
H82 |
119.7 |
240.1 |
H81 |
C8 |
O5 |
C9 |
186.7 |
60.0 |
H82 |
C8 |
C7 |
H71 |
186.1 |
180.0 |
H82 |
C8 |
C7 |
H72 |
66.1 |
300.1 |
H82 |
C8 |
C7 |
H73 |
306.1 |
60.1 |
C7 |
C8 |
H82 |
O5 |
239.2 |
120.0 |
C7 |
C8 |
H82 |
H81 |
119.6 |
239.9 |
O5 |
C8 |
H82 |
H81 |
240.4 |
120.0 |
H82 |
C8 |
O5 |
C9 |
307.1 |
300.1 |
C9 |
O5 |
C8 |
H81 |
186.7 |
60.0 |
C9 |
O5 |
C8 |
H82 |
307.1 |
300.1 |
C10 |
C9 |
O5 |
H91 |
119.4 |
240.0 |
C10 |
C9 |
O5 |
H92 |
240.0 |
120.0 |
O5 |
C9 |
C10 |
O6 |
305.6 |
64.9 |
O5 |
C9 |
C10 |
H101 |
185.2 |
185.0 |
O5 |
C9 |
C10 |
H102 |
65.5 |
304.9 |
H91 |
C9 |
O5 |
H92 |
120.6 |
240.0 |
O5 |
C9 |
C10 |
H91 |
240.6 |
119.9 |
O5 |
C9 |
C10 |
H92 |
120.0 |
239.9 |
H91 |
C9 |
C10 |
H92 |
239.4 |
120.0 |
O6 |
C10 |
C9 |
H101 |
120.4 |
240.0 |
O6 |
C10 |
C9 |
H102 |
240.0 |
120.0 |
C9 |
C10 |
O6 |
C11 |
212.9 |
180.0 |
H101 |
C10 |
C9 |
H102 |
119.6 |
240.0 |
O5 |
C9 |
H91 |
C10 |
120.8 |
240.0 |
O5 |
C9 |
H91 |
H92 |
240.4 |
120.0 |
C10 |
C9 |
H91 |
H92 |
119.6 |
240.0 |
H91 |
C9 |
C10 |
O6 |
64.9 |
305.0 |
H91 |
C9 |
C10 |
H101 |
304.6 |
65.0 |
H91 |
C9 |
C10 |
H102 |
184.9 |
185.0 |
O5 |
C9 |
H92 |
C10 |
238.8 |
120.1 |
O5 |
C9 |
H92 |
H91 |
119.4 |
240.0 |
C10 |
C9 |
H92 |
H91 |
240.6 |
120.0 |
H92 |
C9 |
C10 |
O6 |
185.5 |
185.0 |
H92 |
C9 |
C10 |
H101 |
65.2 |
305.0 |
H92 |
C9 |
C10 |
H102 |
305.5 |
65.0 |
O6 |
C10 |
C9 |
H91 |
64.9 |
305.0 |
O6 |
C10 |
C9 |
H92 |
185.5 |
185.0 |
C9 |
C10 |
O6 |
H101 |
239.6 |
120.1 |
C9 |
C10 |
O6 |
H102 |
120.0 |
240.0 |
H101 |
C10 |
O6 |
H102 |
240.4 |
119.9 |
C10 |
O6 |
C11 |
C12 |
71.4 |
180.1 |
C10 |
O6 |
C11 |
H111 |
311.4 |
300.0 |
C10 |
O6 |
C11 |
H112 |
191.4 |
60.0 |
H101 |
C10 |
C9 |
H91 |
304.6 |
65.0 |
H101 |
C10 |
C9 |
H92 |
65.2 |
305.0 |
C9 |
C10 |
H101 |
O6 |
119.5 |
239.9 |
C9 |
C10 |
H101 |
H102 |
239.7 |
120.0 |
O6 |
C10 |
H101 |
H102 |
120.3 |
240.1 |
H101 |
C10 |
O6 |
C11 |
333.3 |
60.0 |
H102 |
C10 |
C9 |
H91 |
184.9 |
185.0 |
H102 |
C10 |
C9 |
H92 |
305.5 |
65.0 |
C9 |
C10 |
H102 |
O6 |
240.8 |
120.0 |
C9 |
C10 |
H102 |
H101 |
120.4 |
240.0 |
O6 |
C10 |
H102 |
H101 |
239.6 |
120.0 |
H102 |
C10 |
O6 |
C11 |
92.9 |
300.0 |
C11 |
O6 |
C10 |
H101 |
333.3 |
60.0 |
C11 |
O6 |
C10 |
H102 |
92.9 |
300.0 |
C12 |
C11 |
O6 |
H111 |
120.0 |
240.0 |
C12 |
C11 |
O6 |
H112 |
240.0 |
120.0 |
O6 |
C11 |
C12 |
O7 |
32.3 |
65.0 |
O6 |
C11 |
C12 |
H121 |
270.6 |
185.0 |
O6 |
C11 |
C12 |
H122 |
152.3 |
305.0 |
H111 |
C11 |
O6 |
H112 |
120.0 |
240.0 |
O6 |
C11 |
C12 |
H111 |
240.0 |
120.0 |
O6 |
C11 |
C12 |
H112 |
120.0 |
240.0 |
H111 |
C11 |
C12 |
H112 |
240.1 |
120.0 |
O7 |
C12 |
C11 |
H121 |
121.6 |
240.0 |
O7 |
C12 |
C11 |
H122 |
240.0 |
120.0 |
C11 |
C12 |
O7 |
C13 |
208.7 |
180.0 |
H121 |
C12 |
C11 |
H122 |
118.4 |
240.0 |
O6 |
C11 |
H111 |
C12 |
119.9 |
240.0 |
O6 |
C11 |
H111 |
H112 |
239.9 |
120.0 |
C12 |
C11 |
H111 |
H112 |
120.0 |
240.0 |
H111 |
C11 |
C12 |
O7 |
152.3 |
305.0 |
H111 |
C11 |
C12 |
H121 |
30.7 |
65.0 |
H111 |
C11 |
C12 |
H122 |
272.3 |
185.0 |
O6 |
C11 |
H112 |
C12 |
240.1 |
120.0 |
O6 |
C11 |
H112 |
H111 |
120.1 |
240.0 |
C12 |
C11 |
H112 |
H111 |
240.0 |
120.0 |
H112 |
C11 |
C12 |
O7 |
272.3 |
185.0 |
H112 |
C11 |
C12 |
H121 |
150.6 |
305.0 |
H112 |
C11 |
C12 |
H122 |
32.2 |
65.0 |
O7 |
C12 |
C11 |
H111 |
152.3 |
305.0 |
O7 |
C12 |
C11 |
H112 |
272.3 |
185.0 |
C11 |
C12 |
O7 |
H121 |
238.3 |
120.0 |
C11 |
C12 |
O7 |
H122 |
120.0 |
240.0 |
H121 |
C12 |
O7 |
H122 |
241.7 |
120.0 |
C12 |
O7 |
C13 |
C14 |
226.0 |
180.0 |
C12 |
O7 |
C13 |
H131 |
105.2 |
300.0 |
C12 |
O7 |
C13 |
H132 |
346.0 |
60.0 |
H121 |
C12 |
C11 |
H111 |
30.7 |
65.0 |
H121 |
C12 |
C11 |
H112 |
150.6 |
305.0 |
C11 |
C12 |
H121 |
O7 |
117.6 |
239.9 |
C11 |
C12 |
H121 |
H122 |
238.8 |
120.0 |
O7 |
C12 |
H121 |
H122 |
121.2 |
240.1 |
H121 |
C12 |
O7 |
C13 |
330.3 |
60.0 |
H122 |
C12 |
C11 |
H111 |
272.3 |
185.0 |
H122 |
C12 |
C11 |
H112 |
32.2 |
65.0 |
C11 |
C12 |
H122 |
O7 |
243.6 |
120.0 |
C11 |
C12 |
H122 |
H121 |
121.8 |
240.0 |
O7 |
C12 |
H122 |
H121 |
238.2 |
120.0 |
H122 |
C12 |
O7 |
C13 |
88.7 |
300.0 |
C13 |
O7 |
C12 |
H121 |
330.3 |
60.0 |
C13 |
O7 |
C12 |
H122 |
88.7 |
300.0 |
C14 |
C13 |
O7 |
H131 |
120.9 |
240.0 |
C14 |
C13 |
O7 |
H132 |
240.0 |
120.0 |
O7 |
C13 |
C14 |
O8 |
85.8 |
65.0 |
O7 |
C13 |
C14 |
H141 |
324.4 |
185.0 |
O7 |
C13 |
C14 |
H142 |
205.8 |
305.0 |
H131 |
C13 |
O7 |
H132 |
119.2 |
239.9 |
O7 |
C13 |
C14 |
H131 |
239.1 |
119.9 |
O7 |
C13 |
C14 |
H132 |
120.0 |
240.0 |
H131 |
C13 |
C14 |
H132 |
240.9 |
120.0 |
O8 |
C14 |
C13 |
H141 |
121.4 |
239.9 |
O8 |
C14 |
C13 |
H142 |
240.0 |
119.9 |
C13 |
C14 |
O8 |
C15 |
181.3 |
180.0 |
H141 |
C14 |
C13 |
H142 |
118.6 |
240.0 |
O7 |
C13 |
H131 |
C14 |
118.8 |
240.0 |
O7 |
C13 |
H131 |
H132 |
239.4 |
120.0 |
C14 |
C13 |
H131 |
H132 |
120.6 |
240.0 |
H131 |
C13 |
C14 |
O8 |
206.7 |
305.0 |
H131 |
C13 |
C14 |
H141 |
85.3 |
65.1 |
H131 |
C13 |
C14 |
H142 |
326.7 |
185.1 |
O7 |
C13 |
H132 |
C14 |
241.8 |
120.0 |
O7 |
C13 |
H132 |
H131 |
120.9 |
240.0 |
C14 |
C13 |
H132 |
H131 |
239.1 |
120.0 |
H132 |
C13 |
C14 |
O8 |
325.8 |
185.0 |
H132 |
C13 |
C14 |
H141 |
204.4 |
305.0 |
H132 |
C13 |
C14 |
H142 |
85.8 |
65.0 |
O8 |
C14 |
C13 |
H131 |
206.7 |
305.0 |
O8 |
C14 |
C13 |
H132 |
325.8 |
185.0 |
C13 |
C14 |
O8 |
H141 |
238.6 |
120.0 |
C13 |
C14 |
O8 |
H142 |
120.0 |
240.0 |
H141 |
C14 |
O8 |
H142 |
241.4 |
120.0 |
C14 |
O8 |
C15 |
H151 |
304.3 |
300.0 |
C14 |
O8 |
C15 |
H152 |
184.3 |
60.0 |
C14 |
O8 |
C15 |
H153 |
64.3 |
180.1 |
H141 |
C14 |
C13 |
H131 |
85.3 |
65.1 |
H141 |
C14 |
C13 |
H132 |
204.4 |
305.0 |
C13 |
C14 |
H141 |
O8 |
118.1 |
240.0 |
C13 |
C14 |
H141 |
H142 |
239.0 |
120.0 |
O8 |
C14 |
H141 |
H142 |
121.0 |
240.0 |
H141 |
C14 |
O8 |
C15 |
302.7 |
60.0 |
H142 |
C14 |
C13 |
H131 |
326.7 |
185.1 |
H142 |
C14 |
C13 |
H132 |
85.8 |
65.0 |
C13 |
C14 |
H142 |
O8 |
242.9 |
120.0 |
C13 |
C14 |
H142 |
H141 |
121.5 |
240.0 |
O8 |
C14 |
H142 |
H141 |
238.5 |
120.1 |
H142 |
C14 |
O8 |
C15 |
61.3 |
300.0 |
C15 |
O8 |
C14 |
H141 |
302.7 |
60.0 |
C15 |
O8 |
C14 |
H142 |
61.3 |
300.0 |
H151 |
C15 |
O8 |
H152 |
120.0 |
240.0 |
H151 |
C15 |
O8 |
H153 |
240.0 |
120.0 |
H152 |
C15 |
O8 |
H153 |
120.0 |
240.0 |
O8 |
C15 |
H151 |
H152 |
240.0 |
120.0 |
O8 |
C15 |
H151 |
H153 |
120.0 |
240.0 |
H152 |
C15 |
H151 |
H153 |
240.0 |
120.1 |
O8 |
C15 |
H152 |
H151 |
120.0 |
240.0 |
O8 |
C15 |
H152 |
H153 |
240.0 |
120.0 |
H151 |
C15 |
H152 |
H153 |
120.0 |
239.9 |
O8 |
C15 |
H153 |
H151 |
240.0 |
120.0 |
O8 |
C15 |
H153 |
H152 |
120.0 |
240.0 |
H151 |
C15 |
H153 |
H152 |
240.0 |
120.1 |