PDB Chemical Component PG9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PG9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.500 |
1.469 |
| N |
H |
1.020 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
CB |
1.478 |
1.507 |
| CA |
C |
1.511 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG1 |
1.400 |
1.382 |
| CB |
CG2 |
1.393 |
1.383 |
| CG1 |
CD1 |
1.394 |
1.383 |
| CG1 |
HG1 |
1.103 |
1.080 |
| CD1 |
CE |
1.395 |
1.382 |
| CD1 |
HD1 |
1.103 |
1.080 |
| CE |
CD2 |
1.398 |
1.382 |
| CE |
HE |
1.103 |
1.080 |
| CD2 |
CG2 |
1.389 |
1.382 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CG2 |
HG2 |
1.103 |
1.080 |
| C |
O |
1.236 |
1.208 |
| C |
OXT |
1.241 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for PG9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
112.5 |
106.7 |
| CA |
N |
H2 |
108.6 |
106.7 |
| N |
CA |
CB |
108.6 |
109.4 |
| N |
CA |
C |
110.4 |
109.5 |
| N |
CA |
HA |
110.3 |
109.5 |
| H |
N |
H2 |
112.5 |
106.7 |
| CB |
CA |
C |
111.9 |
109.5 |
| CB |
CA |
HA |
108.7 |
109.5 |
| CA |
CB |
CG1 |
119.2 |
120.0 |
| CA |
CB |
CG2 |
120.3 |
120.0 |
| C |
CA |
HA |
106.9 |
109.5 |
| CA |
C |
O |
119.7 |
120.0 |
| CA |
C |
OXT |
121.0 |
120.0 |
| CG1 |
CB |
CG2 |
120.5 |
120.0 |
| CB |
CG1 |
CD1 |
119.9 |
120.0 |
| CB |
CG1 |
HG1 |
120.2 |
120.0 |
| CB |
CG2 |
CD2 |
119.6 |
120.0 |
| CB |
CG2 |
HG2 |
120.3 |
120.0 |
| CD1 |
CG1 |
HG1 |
119.8 |
120.0 |
| CG1 |
CD1 |
CE |
119.4 |
120.0 |
| CG1 |
CD1 |
HD1 |
120.2 |
120.0 |
| CE |
CD1 |
HD1 |
120.3 |
120.0 |
| CD1 |
CE |
CD2 |
120.5 |
120.0 |
| CD1 |
CE |
HE |
119.6 |
120.0 |
| CD2 |
CE |
HE |
119.9 |
120.0 |
| CE |
CD2 |
CG2 |
120.1 |
120.0 |
| CE |
CD2 |
HD2 |
120.3 |
120.0 |
| CG2 |
CD2 |
HD2 |
119.6 |
120.0 |
| CD2 |
CG2 |
HG2 |
120.1 |
120.0 |
| O |
C |
OXT |
119.3 |
120.0 |
| C |
OXT |
HXT |
121.0 |
120.0 |
Torsion Angles for PG9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
234.8 |
246.2 |
| CB |
CA |
N |
C |
123.0 |
120.0 |
| CB |
CA |
N |
HA |
241.0 |
240.0 |
| N |
CA |
CB |
CG1 |
109.3 |
319.7 |
| N |
CA |
CB |
CG2 |
290.1 |
140.0 |
| C |
CA |
N |
HA |
117.9 |
120.0 |
| N |
CA |
C |
O |
221.2 |
20.0 |
| N |
CA |
C |
OXT |
40.7 |
200.0 |
| CA |
N |
H |
H2 |
123.1 |
113.8 |
| H |
N |
CA |
CB |
54.7 |
306.2 |
| H |
N |
CA |
C |
291.7 |
186.2 |
| H |
N |
CA |
HA |
173.8 |
66.2 |
| CA |
N |
H2 |
H |
234.8 |
246.2 |
| H2 |
N |
CA |
CB |
180.0 |
60.0 |
| H2 |
N |
CA |
C |
56.9 |
300.0 |
| H2 |
N |
CA |
HA |
299.0 |
180.0 |
| CB |
CA |
N |
H |
54.7 |
306.2 |
| CB |
CA |
N |
H2 |
180.0 |
60.0 |
| N |
CA |
CB |
C |
237.9 |
240.0 |
| N |
CA |
CB |
HA |
120.1 |
120.0 |
| C |
CA |
CB |
HA |
242.2 |
240.0 |
| CB |
CA |
C |
O |
100.1 |
260.0 |
| CB |
CA |
C |
OXT |
279.6 |
80.0 |
| CG1 |
CB |
CA |
CG2 |
179.3 |
179.7 |
| CA |
CB |
CG1 |
CD1 |
180.6 |
179.8 |
| CA |
CB |
CG1 |
HG1 |
0.6 |
0.2 |
| CA |
CB |
CG2 |
CD2 |
179.3 |
180.0 |
| CA |
CB |
CG2 |
HG2 |
359.3 |
360.0 |
| C |
CA |
N |
H |
291.7 |
186.2 |
| C |
CA |
N |
H2 |
56.9 |
300.0 |
| N |
CA |
C |
CB |
121.1 |
120.0 |
| N |
CA |
C |
HA |
240.0 |
240.0 |
| CB |
CA |
C |
HA |
118.9 |
120.0 |
| C |
CA |
CB |
CG1 |
231.4 |
79.7 |
| C |
CA |
CB |
CG2 |
52.1 |
260.0 |
| O |
C |
CA |
OXT |
180.5 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
173.8 |
66.2 |
| HA |
CA |
N |
H2 |
299.0 |
180.0 |
| N |
CA |
HA |
CB |
241.0 |
240.0 |
| N |
CA |
HA |
C |
120.0 |
120.0 |
| CB |
CA |
HA |
C |
239.0 |
240.0 |
| HA |
CA |
CB |
CG1 |
349.2 |
199.7 |
| HA |
CA |
CB |
CG2 |
170.0 |
20.0 |
| HA |
CA |
C |
O |
341.2 |
140.0 |
| HA |
CA |
C |
OXT |
160.7 |
320.0 |
| CG1 |
CB |
CA |
C |
231.4 |
79.7 |
| CG1 |
CB |
CA |
HA |
349.2 |
199.7 |
| CA |
CB |
CG1 |
CG2 |
180.7 |
180.3 |
| CG1 |
CB |
CG2 |
CD2 |
0.1 |
0.3 |
| CG1 |
CB |
CG2 |
HG2 |
180.1 |
180.3 |
| CD1 |
CG1 |
CB |
HG1 |
180.0 |
179.6 |
| CB |
CG1 |
CD1 |
CE |
0.3 |
0.4 |
| CB |
CG1 |
CD1 |
HD1 |
180.3 |
180.3 |
| CG2 |
CB |
CA |
C |
52.1 |
260.0 |
| CG2 |
CB |
CA |
HA |
170.0 |
20.0 |
| CA |
CB |
CG2 |
CG1 |
179.3 |
179.7 |
| CG2 |
CB |
CG1 |
CD1 |
359.8 |
359.5 |
| CG2 |
CB |
CG1 |
HG1 |
179.8 |
179.9 |
| CE |
CD2 |
CG2 |
CB |
359.9 |
360.0 |
| CB |
CG2 |
CD2 |
HD2 |
179.9 |
180.0 |
| CD2 |
CG2 |
CB |
HG2 |
180.0 |
180.0 |
| CD1 |
CG1 |
CB |
CG2 |
359.8 |
359.5 |
| CB |
CG1 |
CD1 |
HG1 |
180.0 |
180.4 |
| CE |
CD1 |
CG1 |
HD1 |
180.0 |
180.1 |
| CG1 |
CD1 |
CE |
CD2 |
359.7 |
359.9 |
| CG1 |
CD1 |
CE |
HE |
179.7 |
179.8 |
| HG1 |
CG1 |
CB |
CG2 |
179.8 |
179.9 |
| CB |
CG1 |
HG1 |
CD1 |
180.0 |
179.6 |
| HG1 |
CG1 |
CD1 |
CE |
180.3 |
180.0 |
| HG1 |
CG1 |
CD1 |
HD1 |
0.3 |
359.9 |
| CE |
CD1 |
CG1 |
HG1 |
180.3 |
180.0 |
| CG1 |
CD1 |
CE |
HD1 |
180.0 |
179.9 |
| CD2 |
CE |
CD1 |
HE |
180.0 |
180.0 |
| CD1 |
CE |
CD2 |
CG2 |
0.2 |
359.9 |
| CD1 |
CE |
CD2 |
HD2 |
180.2 |
180.0 |
| HD1 |
CD1 |
CG1 |
HG1 |
0.3 |
359.9 |
| CG1 |
CD1 |
HD1 |
CE |
180.0 |
180.1 |
| HD1 |
CD1 |
CE |
CD2 |
179.7 |
180.0 |
| HD1 |
CD1 |
CE |
HE |
359.7 |
360.0 |
| CB |
CG2 |
CD2 |
CE |
359.9 |
360.0 |
| CD2 |
CE |
CD1 |
HD1 |
179.7 |
180.0 |
| CD1 |
CE |
CD2 |
HE |
180.0 |
180.0 |
| CG2 |
CD2 |
CE |
HD2 |
180.0 |
180.0 |
| CE |
CD2 |
CG2 |
HG2 |
180.0 |
180.0 |
| HE |
CE |
CD1 |
HD1 |
359.7 |
360.0 |
| CD1 |
CE |
HE |
CD2 |
180.0 |
180.0 |
| HE |
CE |
CD2 |
CG2 |
180.2 |
180.0 |
| HE |
CE |
CD2 |
HD2 |
0.2 |
360.0 |
| CB |
CG2 |
CD2 |
HG2 |
180.0 |
180.0 |
| CG2 |
CD2 |
CE |
HE |
180.2 |
180.0 |
| CE |
CD2 |
CG2 |
HD2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE |
HE |
0.2 |
360.0 |
| CE |
CD2 |
HD2 |
CG2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CG2 |
HG2 |
359.9 |
360.0 |
| CB |
CG2 |
HG2 |
CD2 |
180.0 |
180.0 |
| HG2 |
CG2 |
CD2 |
HD2 |
359.9 |
360.0 |
| O |
C |
CA |
HA |
341.2 |
140.0 |
| CA |
C |
O |
OXT |
179.5 |
180.0 |
| O |
C |
OXT |
HXT |
359.5 |
0.0 |
| OXT |
C |
CA |
HA |
160.7 |
320.0 |
| CA |
C |
OXT |
O |
180.5 |
180.0 |