PDB Chemical Component PG5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PG5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.445 |
1.429 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.114 |
1.090 |
C1 |
H13 |
1.114 |
1.090 |
O1 |
C2 |
1.446 |
1.428 |
C2 |
C3 |
1.559 |
1.529 |
C2 |
H21 |
1.115 |
1.091 |
C2 |
H22 |
1.114 |
1.089 |
C3 |
O2 |
1.445 |
1.429 |
C3 |
H31 |
1.115 |
1.090 |
C3 |
H32 |
1.116 |
1.089 |
O2 |
C4 |
1.444 |
1.429 |
C4 |
C5 |
1.562 |
1.528 |
C4 |
H41 |
1.116 |
1.090 |
C4 |
H42 |
1.116 |
1.090 |
C5 |
O3 |
1.447 |
1.429 |
C5 |
H51 |
1.114 |
1.090 |
C5 |
H52 |
1.114 |
1.090 |
O3 |
C6 |
1.444 |
1.429 |
C6 |
C7 |
1.560 |
1.530 |
C6 |
H61 |
1.115 |
1.089 |
C6 |
H62 |
1.115 |
1.090 |
C7 |
O4 |
1.449 |
1.428 |
C7 |
H71 |
1.116 |
1.089 |
C7 |
H72 |
1.115 |
1.090 |
O4 |
C8 |
1.446 |
1.429 |
C8 |
H81 |
1.115 |
1.090 |
C8 |
H82 |
1.116 |
1.090 |
C8 |
H83 |
1.115 |
1.090 |
Bond Angles for PG5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
H11 |
109.6 |
109.4 |
O1 |
C1 |
H12 |
112.1 |
109.5 |
O1 |
C1 |
H13 |
112.1 |
109.5 |
C1 |
O1 |
C2 |
109.7 |
106.8 |
H11 |
C1 |
H12 |
112.1 |
109.5 |
H11 |
C1 |
H13 |
112.1 |
109.5 |
H12 |
C1 |
H13 |
98.3 |
109.5 |
O1 |
C2 |
C3 |
111.4 |
109.5 |
O1 |
C2 |
H21 |
111.5 |
109.4 |
O1 |
C2 |
H22 |
111.5 |
109.5 |
C3 |
C2 |
H21 |
111.5 |
109.5 |
C3 |
C2 |
H22 |
111.5 |
109.5 |
C2 |
C3 |
O2 |
110.0 |
109.5 |
C2 |
C3 |
H31 |
112.0 |
109.5 |
C2 |
C3 |
H32 |
112.0 |
109.5 |
H21 |
C2 |
H22 |
99.0 |
109.5 |
O2 |
C3 |
H31 |
112.1 |
109.4 |
O2 |
C3 |
H32 |
112.0 |
109.5 |
C3 |
O2 |
C4 |
111.5 |
106.8 |
H31 |
C3 |
H32 |
98.3 |
109.5 |
O2 |
C4 |
C5 |
110.6 |
109.5 |
O2 |
C4 |
H41 |
111.8 |
109.4 |
O2 |
C4 |
H42 |
111.8 |
109.5 |
C5 |
C4 |
H41 |
111.8 |
109.5 |
C5 |
C4 |
H42 |
111.8 |
109.5 |
C4 |
C5 |
O3 |
110.6 |
109.5 |
C4 |
C5 |
H51 |
111.7 |
109.5 |
C4 |
C5 |
H52 |
111.8 |
109.5 |
H41 |
C4 |
H42 |
98.6 |
109.5 |
O3 |
C5 |
H51 |
111.8 |
109.5 |
O3 |
C5 |
H52 |
111.8 |
109.4 |
C5 |
O3 |
C6 |
111.2 |
106.8 |
H51 |
C5 |
H52 |
98.6 |
109.5 |
O3 |
C6 |
C7 |
110.2 |
109.5 |
O3 |
C6 |
H61 |
111.9 |
109.5 |
O3 |
C6 |
H62 |
111.9 |
109.4 |
C7 |
C6 |
H61 |
111.9 |
109.5 |
C7 |
C6 |
H62 |
111.9 |
109.4 |
C6 |
C7 |
O4 |
111.0 |
109.4 |
C6 |
C7 |
H71 |
111.6 |
109.5 |
C6 |
C7 |
H72 |
111.6 |
109.5 |
H61 |
C6 |
H62 |
98.5 |
109.5 |
O4 |
C7 |
H71 |
111.7 |
109.5 |
O4 |
C7 |
H72 |
111.7 |
109.5 |
C7 |
O4 |
C8 |
110.2 |
106.8 |
H71 |
C7 |
H72 |
98.7 |
109.5 |
O4 |
C8 |
H81 |
110.2 |
109.5 |
O4 |
C8 |
H82 |
111.9 |
109.5 |
O4 |
C8 |
H83 |
111.9 |
109.4 |
H81 |
C8 |
H82 |
112.0 |
109.5 |
H81 |
C8 |
H83 |
112.0 |
109.5 |
H82 |
C8 |
H83 |
98.4 |
109.5 |
Torsion Angles for PG5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H11 |
C1 |
O1 |
H12 |
234.8 |
240.0 |
H11 |
C1 |
O1 |
H13 |
125.3 |
120.0 |
H12 |
C1 |
O1 |
H13 |
250.5 |
240.0 |
C1 |
O1 |
C2 |
C3 |
199.1 |
180.0 |
C1 |
O1 |
C2 |
H21 |
324.4 |
300.0 |
C1 |
O1 |
C2 |
H22 |
73.9 |
60.0 |
O1 |
C1 |
H11 |
H12 |
125.2 |
120.0 |
O1 |
C1 |
H11 |
H13 |
234.8 |
240.0 |
H11 |
C1 |
O1 |
C2 |
180.0 |
60.0 |
H12 |
C1 |
H11 |
H13 |
109.5 |
120.0 |
O1 |
C1 |
H12 |
H11 |
236.2 |
240.0 |
O1 |
C1 |
H12 |
H13 |
118.1 |
120.0 |
H12 |
C1 |
O1 |
C2 |
305.2 |
180.0 |
H11 |
C1 |
H12 |
H13 |
241.9 |
240.0 |
O1 |
C1 |
H13 |
H11 |
123.9 |
120.0 |
O1 |
C1 |
H13 |
H12 |
241.9 |
240.0 |
H13 |
C1 |
O1 |
C2 |
54.7 |
300.1 |
H11 |
C1 |
H13 |
H12 |
118.1 |
120.0 |
C2 |
O1 |
C1 |
H11 |
180.0 |
60.0 |
C2 |
O1 |
C1 |
H12 |
305.2 |
180.0 |
C2 |
O1 |
C1 |
H13 |
54.7 |
300.1 |
C3 |
C2 |
O1 |
H21 |
234.8 |
240.0 |
C3 |
C2 |
O1 |
H22 |
125.2 |
120.0 |
O1 |
C2 |
C3 |
O2 |
137.7 |
60.0 |
O1 |
C2 |
C3 |
H31 |
263.0 |
180.0 |
O1 |
C2 |
C3 |
H32 |
12.4 |
299.9 |
H21 |
C2 |
O1 |
H22 |
250.4 |
240.0 |
O1 |
C2 |
C3 |
H21 |
125.2 |
119.9 |
O1 |
C2 |
C3 |
H22 |
234.8 |
240.0 |
H21 |
C2 |
C3 |
H22 |
109.6 |
120.0 |
O2 |
C3 |
C2 |
H31 |
234.7 |
240.0 |
O2 |
C3 |
C2 |
H32 |
125.3 |
120.1 |
C2 |
C3 |
O2 |
C4 |
132.5 |
180.0 |
H31 |
C3 |
C2 |
H32 |
250.6 |
240.0 |
O1 |
C2 |
H21 |
C3 |
234.8 |
240.0 |
O1 |
C2 |
H21 |
H22 |
117.4 |
120.0 |
C3 |
C2 |
H21 |
H22 |
242.6 |
240.0 |
H21 |
C2 |
C3 |
O2 |
12.5 |
300.1 |
H21 |
C2 |
C3 |
H31 |
137.8 |
60.0 |
H21 |
C2 |
C3 |
H32 |
247.2 |
180.0 |
O1 |
C2 |
H22 |
C3 |
125.2 |
120.0 |
O1 |
C2 |
H22 |
H21 |
242.6 |
240.1 |
C3 |
C2 |
H22 |
H21 |
117.4 |
120.0 |
H22 |
C2 |
C3 |
O2 |
262.9 |
180.0 |
H22 |
C2 |
C3 |
H31 |
28.2 |
300.0 |
H22 |
C2 |
C3 |
H32 |
137.6 |
60.0 |
O2 |
C3 |
C2 |
H21 |
12.5 |
300.1 |
O2 |
C3 |
C2 |
H22 |
262.9 |
180.0 |
C2 |
C3 |
O2 |
H31 |
125.3 |
120.0 |
C2 |
C3 |
O2 |
H32 |
234.8 |
240.0 |
H31 |
C3 |
O2 |
H32 |
109.4 |
120.0 |
C3 |
O2 |
C4 |
C5 |
218.0 |
180.0 |
C3 |
O2 |
C4 |
H41 |
343.3 |
300.0 |
C3 |
O2 |
C4 |
H42 |
92.8 |
60.0 |
H31 |
C3 |
C2 |
H21 |
137.8 |
60.0 |
H31 |
C3 |
C2 |
H22 |
28.2 |
300.0 |
C2 |
C3 |
H31 |
O2 |
235.8 |
240.0 |
C2 |
C3 |
H31 |
H32 |
117.9 |
120.0 |
O2 |
C3 |
H31 |
H32 |
242.1 |
240.0 |
H31 |
C3 |
O2 |
C4 |
7.2 |
60.0 |
H32 |
C3 |
C2 |
H21 |
247.2 |
180.0 |
H32 |
C3 |
C2 |
H22 |
137.6 |
60.0 |
C2 |
C3 |
H32 |
O2 |
124.1 |
120.1 |
C2 |
C3 |
H32 |
H31 |
242.1 |
240.0 |
O2 |
C3 |
H32 |
H31 |
118.0 |
120.0 |
H32 |
C3 |
O2 |
C4 |
257.7 |
300.1 |
C4 |
O2 |
C3 |
H31 |
7.2 |
60.0 |
C4 |
O2 |
C3 |
H32 |
257.7 |
300.1 |
C5 |
C4 |
O2 |
H41 |
234.7 |
240.0 |
C5 |
C4 |
O2 |
H42 |
125.3 |
120.0 |
O2 |
C4 |
C5 |
O3 |
247.1 |
60.0 |
O2 |
C4 |
C5 |
H51 |
12.4 |
180.0 |
O2 |
C4 |
C5 |
H52 |
121.8 |
300.0 |
H41 |
C4 |
O2 |
H42 |
250.6 |
240.0 |
O2 |
C4 |
C5 |
H41 |
125.3 |
120.0 |
O2 |
C4 |
C5 |
H42 |
234.7 |
240.0 |
H41 |
C4 |
C5 |
H42 |
109.4 |
120.0 |
O3 |
C5 |
C4 |
H51 |
234.7 |
240.0 |
O3 |
C5 |
C4 |
H52 |
125.3 |
120.0 |
C4 |
C5 |
O3 |
C6 |
183.7 |
180.0 |
H51 |
C5 |
C4 |
H52 |
250.5 |
240.0 |
O2 |
C4 |
H41 |
C5 |
235.3 |
240.0 |
O2 |
C4 |
H41 |
H42 |
117.7 |
120.0 |
C5 |
C4 |
H41 |
H42 |
242.3 |
240.0 |
H41 |
C4 |
C5 |
O3 |
121.8 |
300.0 |
H41 |
C4 |
C5 |
H51 |
247.1 |
60.0 |
H41 |
C4 |
C5 |
H52 |
356.5 |
180.0 |
O2 |
C4 |
H42 |
C5 |
124.7 |
120.0 |
O2 |
C4 |
H42 |
H41 |
242.3 |
240.0 |
C5 |
C4 |
H42 |
H41 |
117.7 |
120.0 |
H42 |
C4 |
C5 |
O3 |
12.4 |
180.0 |
H42 |
C4 |
C5 |
H51 |
137.6 |
300.0 |
H42 |
C4 |
C5 |
H52 |
247.1 |
60.0 |
O3 |
C5 |
C4 |
H41 |
121.8 |
300.0 |
O3 |
C5 |
C4 |
H42 |
12.4 |
180.0 |
C4 |
C5 |
O3 |
H51 |
125.2 |
120.0 |
C4 |
C5 |
O3 |
H52 |
234.8 |
240.0 |
H51 |
C5 |
O3 |
H52 |
109.5 |
120.0 |
C5 |
O3 |
C6 |
C7 |
201.9 |
180.0 |
C5 |
O3 |
C6 |
H61 |
327.2 |
300.1 |
C5 |
O3 |
C6 |
H62 |
76.7 |
60.0 |
H51 |
C5 |
C4 |
H41 |
247.1 |
60.0 |
H51 |
C5 |
C4 |
H42 |
137.6 |
300.0 |
C4 |
C5 |
H51 |
O3 |
235.4 |
240.0 |
C4 |
C5 |
H51 |
H52 |
117.7 |
120.0 |
O3 |
C5 |
H51 |
H52 |
242.2 |
240.0 |
H51 |
C5 |
O3 |
C6 |
58.5 |
60.0 |
H52 |
C5 |
C4 |
H41 |
356.5 |
180.0 |
H52 |
C5 |
C4 |
H42 |
247.1 |
60.0 |
C4 |
C5 |
H52 |
O3 |
124.6 |
120.0 |
C4 |
C5 |
H52 |
H51 |
242.4 |
240.0 |
O3 |
C5 |
H52 |
H51 |
117.8 |
120.0 |
H52 |
C5 |
O3 |
C6 |
309.0 |
300.0 |
C6 |
O3 |
C5 |
H51 |
58.5 |
60.0 |
C6 |
O3 |
C5 |
H52 |
309.0 |
300.0 |
C7 |
C6 |
O3 |
H61 |
234.7 |
239.9 |
C7 |
C6 |
O3 |
H62 |
125.2 |
120.0 |
O3 |
C6 |
C7 |
O4 |
176.1 |
60.0 |
O3 |
C6 |
C7 |
H71 |
301.4 |
180.0 |
O3 |
C6 |
C7 |
H72 |
50.8 |
300.1 |
H61 |
C6 |
O3 |
H62 |
250.5 |
240.0 |
O3 |
C6 |
C7 |
H61 |
125.2 |
120.1 |
O3 |
C6 |
C7 |
H62 |
234.8 |
240.0 |
H61 |
C6 |
C7 |
H62 |
109.6 |
120.0 |
O4 |
C7 |
C6 |
H71 |
234.7 |
240.0 |
O4 |
C7 |
C6 |
H72 |
125.3 |
120.0 |
C6 |
C7 |
O4 |
C8 |
218.8 |
180.0 |
H71 |
C7 |
C6 |
H72 |
250.6 |
240.0 |
O3 |
C6 |
H61 |
C7 |
235.7 |
239.9 |
O3 |
C6 |
H61 |
H62 |
117.8 |
120.0 |
C7 |
C6 |
H61 |
H62 |
242.1 |
240.0 |
H61 |
C6 |
C7 |
O4 |
50.8 |
300.0 |
H61 |
C6 |
C7 |
H71 |
176.1 |
60.0 |
H61 |
C6 |
C7 |
H72 |
285.6 |
180.0 |
O3 |
C6 |
H62 |
C7 |
124.3 |
120.0 |
O3 |
C6 |
H62 |
H61 |
242.2 |
240.0 |
C7 |
C6 |
H62 |
H61 |
117.9 |
120.0 |
H62 |
C6 |
C7 |
O4 |
301.3 |
180.0 |
H62 |
C6 |
C7 |
H71 |
66.6 |
300.0 |
H62 |
C6 |
C7 |
H72 |
176.0 |
60.0 |
O4 |
C7 |
C6 |
H61 |
50.8 |
300.0 |
O4 |
C7 |
C6 |
H62 |
301.3 |
180.0 |
C6 |
C7 |
O4 |
H71 |
125.3 |
120.0 |
C6 |
C7 |
O4 |
H72 |
234.7 |
240.0 |
H71 |
C7 |
O4 |
H72 |
109.5 |
120.0 |
C7 |
O4 |
C8 |
H81 |
180.0 |
180.0 |
C7 |
O4 |
C8 |
H82 |
305.3 |
300.0 |
C7 |
O4 |
C8 |
H83 |
54.7 |
60.0 |
H71 |
C7 |
C6 |
H61 |
176.1 |
60.0 |
H71 |
C7 |
C6 |
H62 |
66.6 |
300.0 |
C6 |
C7 |
H71 |
O4 |
235.1 |
240.0 |
C6 |
C7 |
H71 |
H72 |
117.5 |
120.0 |
O4 |
C7 |
H71 |
H72 |
242.4 |
240.0 |
H71 |
C7 |
O4 |
C8 |
93.5 |
60.0 |
H72 |
C7 |
C6 |
H61 |
285.6 |
180.0 |
H72 |
C7 |
C6 |
H62 |
176.0 |
60.0 |
C6 |
C7 |
H72 |
O4 |
124.9 |
119.9 |
C6 |
C7 |
H72 |
H71 |
242.5 |
240.0 |
O4 |
C7 |
H72 |
H71 |
117.6 |
120.0 |
H72 |
C7 |
O4 |
C8 |
344.0 |
300.0 |
C8 |
O4 |
C7 |
H71 |
93.5 |
60.0 |
C8 |
O4 |
C7 |
H72 |
344.0 |
300.0 |
H81 |
C8 |
O4 |
H82 |
234.7 |
240.0 |
H81 |
C8 |
O4 |
H83 |
125.3 |
120.0 |
H82 |
C8 |
O4 |
H83 |
250.6 |
240.0 |
O4 |
C8 |
H81 |
H82 |
125.3 |
120.0 |
O4 |
C8 |
H81 |
H83 |
234.8 |
240.0 |
H82 |
C8 |
H81 |
H83 |
109.5 |
120.0 |
O4 |
C8 |
H82 |
H81 |
235.7 |
240.0 |
O4 |
C8 |
H82 |
H83 |
117.8 |
120.0 |
H81 |
C8 |
H82 |
H83 |
242.1 |
240.0 |
O4 |
C8 |
H83 |
H81 |
124.3 |
120.0 |
O4 |
C8 |
H83 |
H82 |
242.2 |
240.0 |
H81 |
C8 |
H83 |
H82 |
117.9 |
120.0 |