PDB Chemical Component PG5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PG5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1 1.445 1.429
C1 H11 1.115 1.090
C1 H12 1.114 1.090
C1 H13 1.114 1.090
O1 C2 1.446 1.428
C2 C3 1.559 1.529
C2 H21 1.115 1.091
C2 H22 1.114 1.089
C3 O2 1.445 1.429
C3 H31 1.115 1.090
C3 H32 1.116 1.089
O2 C4 1.444 1.429
C4 C5 1.562 1.528
C4 H41 1.116 1.090
C4 H42 1.116 1.090
C5 O3 1.447 1.429
C5 H51 1.114 1.090
C5 H52 1.114 1.090
O3 C6 1.444 1.429
C6 C7 1.560 1.530
C6 H61 1.115 1.089
C6 H62 1.115 1.090
C7 O4 1.449 1.428
C7 H71 1.116 1.089
C7 H72 1.115 1.090
O4 C8 1.446 1.429
C8 H81 1.115 1.090
C8 H82 1.116 1.090
C8 H83 1.115 1.090

Bond Angles for PG5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 H11 109.6 109.4
O1 C1 H12 112.1 109.5
O1 C1 H13 112.1 109.5
C1 O1 C2 109.7 106.8
H11 C1 H12 112.1 109.5
H11 C1 H13 112.1 109.5
H12 C1 H13 98.3 109.5
O1 C2 C3 111.4 109.5
O1 C2 H21 111.5 109.4
O1 C2 H22 111.5 109.5
C3 C2 H21 111.5 109.5
C3 C2 H22 111.5 109.5
C2 C3 O2 110.0 109.5
C2 C3 H31 112.0 109.5
C2 C3 H32 112.0 109.5
H21 C2 H22 99.0 109.5
O2 C3 H31 112.1 109.4
O2 C3 H32 112.0 109.5
C3 O2 C4 111.5 106.8
H31 C3 H32 98.3 109.5
O2 C4 C5 110.6 109.5
O2 C4 H41 111.8 109.4
O2 C4 H42 111.8 109.5
C5 C4 H41 111.8 109.5
C5 C4 H42 111.8 109.5
C4 C5 O3 110.6 109.5
C4 C5 H51 111.7 109.5
C4 C5 H52 111.8 109.5
H41 C4 H42 98.6 109.5
O3 C5 H51 111.8 109.5
O3 C5 H52 111.8 109.4
C5 O3 C6 111.2 106.8
H51 C5 H52 98.6 109.5
O3 C6 C7 110.2 109.5
O3 C6 H61 111.9 109.5
O3 C6 H62 111.9 109.4
C7 C6 H61 111.9 109.5
C7 C6 H62 111.9 109.4
C6 C7 O4 111.0 109.4
C6 C7 H71 111.6 109.5
C6 C7 H72 111.6 109.5
H61 C6 H62 98.5 109.5
O4 C7 H71 111.7 109.5
O4 C7 H72 111.7 109.5
C7 O4 C8 110.2 106.8
H71 C7 H72 98.7 109.5
O4 C8 H81 110.2 109.5
O4 C8 H82 111.9 109.5
O4 C8 H83 111.9 109.4
H81 C8 H82 112.0 109.5
H81 C8 H83 112.0 109.5
H82 C8 H83 98.4 109.5

Torsion Angles for PG5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H11 C1 O1 H12 234.8 240.0
H11 C1 O1 H13 125.3 120.0
H12 C1 O1 H13 250.5 240.0
C1 O1 C2 C3 199.1 180.0
C1 O1 C2 H21 324.4 300.0
C1 O1 C2 H22 73.9 60.0
O1 C1 H11 H12 125.2 120.0
O1 C1 H11 H13 234.8 240.0
H11 C1 O1 C2 180.0 60.0
H12 C1 H11 H13 109.5 120.0
O1 C1 H12 H11 236.2 240.0
O1 C1 H12 H13 118.1 120.0
H12 C1 O1 C2 305.2 180.0
H11 C1 H12 H13 241.9 240.0
O1 C1 H13 H11 123.9 120.0
O1 C1 H13 H12 241.9 240.0
H13 C1 O1 C2 54.7 300.1
H11 C1 H13 H12 118.1 120.0
C2 O1 C1 H11 180.0 60.0
C2 O1 C1 H12 305.2 180.0
C2 O1 C1 H13 54.7 300.1
C3 C2 O1 H21 234.8 240.0
C3 C2 O1 H22 125.2 120.0
O1 C2 C3 O2 137.7 60.0
O1 C2 C3 H31 263.0 180.0
O1 C2 C3 H32 12.4 299.9
H21 C2 O1 H22 250.4 240.0
O1 C2 C3 H21 125.2 119.9
O1 C2 C3 H22 234.8 240.0
H21 C2 C3 H22 109.6 120.0
O2 C3 C2 H31 234.7 240.0
O2 C3 C2 H32 125.3 120.1
C2 C3 O2 C4 132.5 180.0
H31 C3 C2 H32 250.6 240.0
O1 C2 H21 C3 234.8 240.0
O1 C2 H21 H22 117.4 120.0
C3 C2 H21 H22 242.6 240.0
H21 C2 C3 O2 12.5 300.1
H21 C2 C3 H31 137.8 60.0
H21 C2 C3 H32 247.2 180.0
O1 C2 H22 C3 125.2 120.0
O1 C2 H22 H21 242.6 240.1
C3 C2 H22 H21 117.4 120.0
H22 C2 C3 O2 262.9 180.0
H22 C2 C3 H31 28.2 300.0
H22 C2 C3 H32 137.6 60.0
O2 C3 C2 H21 12.5 300.1
O2 C3 C2 H22 262.9 180.0
C2 C3 O2 H31 125.3 120.0
C2 C3 O2 H32 234.8 240.0
H31 C3 O2 H32 109.4 120.0
C3 O2 C4 C5 218.0 180.0
C3 O2 C4 H41 343.3 300.0
C3 O2 C4 H42 92.8 60.0
H31 C3 C2 H21 137.8 60.0
H31 C3 C2 H22 28.2 300.0
C2 C3 H31 O2 235.8 240.0
C2 C3 H31 H32 117.9 120.0
O2 C3 H31 H32 242.1 240.0
H31 C3 O2 C4 7.2 60.0
H32 C3 C2 H21 247.2 180.0
H32 C3 C2 H22 137.6 60.0
C2 C3 H32 O2 124.1 120.1
C2 C3 H32 H31 242.1 240.0
O2 C3 H32 H31 118.0 120.0
H32 C3 O2 C4 257.7 300.1
C4 O2 C3 H31 7.2 60.0
C4 O2 C3 H32 257.7 300.1
C5 C4 O2 H41 234.7 240.0
C5 C4 O2 H42 125.3 120.0
O2 C4 C5 O3 247.1 60.0
O2 C4 C5 H51 12.4 180.0
O2 C4 C5 H52 121.8 300.0
H41 C4 O2 H42 250.6 240.0
O2 C4 C5 H41 125.3 120.0
O2 C4 C5 H42 234.7 240.0
H41 C4 C5 H42 109.4 120.0
O3 C5 C4 H51 234.7 240.0
O3 C5 C4 H52 125.3 120.0
C4 C5 O3 C6 183.7 180.0
H51 C5 C4 H52 250.5 240.0
O2 C4 H41 C5 235.3 240.0
O2 C4 H41 H42 117.7 120.0
C5 C4 H41 H42 242.3 240.0
H41 C4 C5 O3 121.8 300.0
H41 C4 C5 H51 247.1 60.0
H41 C4 C5 H52 356.5 180.0
O2 C4 H42 C5 124.7 120.0
O2 C4 H42 H41 242.3 240.0
C5 C4 H42 H41 117.7 120.0
H42 C4 C5 O3 12.4 180.0
H42 C4 C5 H51 137.6 300.0
H42 C4 C5 H52 247.1 60.0
O3 C5 C4 H41 121.8 300.0
O3 C5 C4 H42 12.4 180.0
C4 C5 O3 H51 125.2 120.0
C4 C5 O3 H52 234.8 240.0
H51 C5 O3 H52 109.5 120.0
C5 O3 C6 C7 201.9 180.0
C5 O3 C6 H61 327.2 300.1
C5 O3 C6 H62 76.7 60.0
H51 C5 C4 H41 247.1 60.0
H51 C5 C4 H42 137.6 300.0
C4 C5 H51 O3 235.4 240.0
C4 C5 H51 H52 117.7 120.0
O3 C5 H51 H52 242.2 240.0
H51 C5 O3 C6 58.5 60.0
H52 C5 C4 H41 356.5 180.0
H52 C5 C4 H42 247.1 60.0
C4 C5 H52 O3 124.6 120.0
C4 C5 H52 H51 242.4 240.0
O3 C5 H52 H51 117.8 120.0
H52 C5 O3 C6 309.0 300.0
C6 O3 C5 H51 58.5 60.0
C6 O3 C5 H52 309.0 300.0
C7 C6 O3 H61 234.7 239.9
C7 C6 O3 H62 125.2 120.0
O3 C6 C7 O4 176.1 60.0
O3 C6 C7 H71 301.4 180.0
O3 C6 C7 H72 50.8 300.1
H61 C6 O3 H62 250.5 240.0
O3 C6 C7 H61 125.2 120.1
O3 C6 C7 H62 234.8 240.0
H61 C6 C7 H62 109.6 120.0
O4 C7 C6 H71 234.7 240.0
O4 C7 C6 H72 125.3 120.0
C6 C7 O4 C8 218.8 180.0
H71 C7 C6 H72 250.6 240.0
O3 C6 H61 C7 235.7 239.9
O3 C6 H61 H62 117.8 120.0
C7 C6 H61 H62 242.1 240.0
H61 C6 C7 O4 50.8 300.0
H61 C6 C7 H71 176.1 60.0
H61 C6 C7 H72 285.6 180.0
O3 C6 H62 C7 124.3 120.0
O3 C6 H62 H61 242.2 240.0
C7 C6 H62 H61 117.9 120.0
H62 C6 C7 O4 301.3 180.0
H62 C6 C7 H71 66.6 300.0
H62 C6 C7 H72 176.0 60.0
O4 C7 C6 H61 50.8 300.0
O4 C7 C6 H62 301.3 180.0
C6 C7 O4 H71 125.3 120.0
C6 C7 O4 H72 234.7 240.0
H71 C7 O4 H72 109.5 120.0
C7 O4 C8 H81 180.0 180.0
C7 O4 C8 H82 305.3 300.0
C7 O4 C8 H83 54.7 60.0
H71 C7 C6 H61 176.1 60.0
H71 C7 C6 H62 66.6 300.0
C6 C7 H71 O4 235.1 240.0
C6 C7 H71 H72 117.5 120.0
O4 C7 H71 H72 242.4 240.0
H71 C7 O4 C8 93.5 60.0
H72 C7 C6 H61 285.6 180.0
H72 C7 C6 H62 176.0 60.0
C6 C7 H72 O4 124.9 119.9
C6 C7 H72 H71 242.5 240.0
O4 C7 H72 H71 117.6 120.0
H72 C7 O4 C8 344.0 300.0
C8 O4 C7 H71 93.5 60.0
C8 O4 C7 H72 344.0 300.0
H81 C8 O4 H82 234.7 240.0
H81 C8 O4 H83 125.3 120.0
H82 C8 O4 H83 250.6 240.0
O4 C8 H81 H82 125.3 120.0
O4 C8 H81 H83 234.8 240.0
H82 C8 H81 H83 109.5 120.0
O4 C8 H82 H81 235.7 240.0
O4 C8 H82 H83 117.8 120.0
H81 C8 H82 H83 242.1 240.0
O4 C8 H83 H81 124.3 120.0
O4 C8 H83 H82 242.2 240.0
H81 C8 H83 H82 117.9 120.0