PDB Chemical Component PG4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PG4

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C1	1.453	1.428
O1	HO1	0.949	0.967
C1	C2	1.568	1.530
C1	H11	1.115	1.090
C1	H12	1.115	1.090
C2	O2	1.487	1.428
C2	H21	1.116	1.090
C2	H22	1.115	1.090
O2	C3	1.450	1.428
C3	C4	1.523	1.531
C3	H31	1.115	1.091
C3	H32	1.115	1.090
C4	O3	1.470	1.429
C4	H41	1.115	1.090
C4	H42	1.115	1.089
O3	C5	1.458	1.428
C5	C6	1.524	1.530
C5	H51	1.114	1.089
C5	H52	1.115	1.091
C6	O4	1.420	1.429
C6	H61	1.115	1.090
C6	H62	1.114	1.090
O4	C7	1.431	1.429
C7	C8	1.532	1.529
C7	H71	1.115	1.090
C7	H72	1.115	1.090
C8	O5	1.424	1.429
C8	H81	1.114	1.090
C8	H82	1.116	1.090
O5	HO5	0.950	0.967

Bond Angles for PG4

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O1	HO1	113.8	106.8
O1	C1	C2	113.7	109.4
O1	C1	H11	110.7	109.5
O1	C1	H12	110.6	109.5
C2	C1	H11	110.6	109.4
C2	C1	H12	110.6	109.5
C1	C2	O2	112.0	109.5
C1	C2	H21	111.3	109.4
C1	C2	H22	111.3	109.5
H11	C1	H12	99.7	109.5
O2	C2	H21	111.3	109.5
O2	C2	H22	111.3	109.5
C2	O2	C3	116.5	106.8
H21	C2	H22	99.0	109.4
O2	C3	C4	108.6	109.5
O2	C3	H31	112.5	109.5
O2	C3	H32	112.5	109.5
C4	C3	H31	112.5	109.4
C4	C3	H32	112.5	109.4
C3	C4	O3	108.6	109.4
C3	C4	H41	112.5	109.5
C3	C4	H42	112.6	109.4
H31	C3	H32	98.0	109.4
O3	C4	H41	112.5	109.5
O3	C4	H42	112.5	109.5
C4	O3	C5	118.3	106.8
H41	C4	H42	97.9	109.5
O3	C5	C6	109.0	109.5
O3	C5	H51	112.4	109.6
O3	C5	H52	112.4	109.4
C6	C5	H51	112.4	109.5
C6	C5	H52	112.4	109.4
C5	C6	O4	110.1	109.5
C5	C6	H61	111.9	109.5
C5	C6	H62	112.0	109.5
H51	C5	H52	98.0	109.4
O4	C6	H61	112.0	109.5
O4	C6	H62	112.0	109.4
C6	O4	C7	115.1	106.8
H61	C6	H62	98.5	109.5
O4	C7	C8	110.3	109.5
O4	C7	H71	111.8	109.5
O4	C7	H72	111.9	109.5
C8	C7	H71	111.9	109.5
C8	C7	H72	111.9	109.5
C7	C8	O5	110.3	109.5
C7	C8	H81	111.9	109.5
C7	C8	H82	111.9	109.5
H71	C7	H72	98.6	109.4
O5	C8	H81	111.9	109.4
O5	C8	H82	111.9	109.5
C8	O5	HO5	110.3	106.8
H81	C8	H82	98.5	109.4

Torsion Angles for PG4

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	H11	234.7	240.0
C2	C1	O1	H12	125.2	120.1
O1	C1	C2	O2	80.3	60.0
O1	C1	C2	H21	205.5	180.0
O1	C1	C2	H22	315.0	300.0
H11	C1	O1	H12	250.5	240.0
HO1	O1	C1	C2	180.0	180.0
HO1	O1	C1	H11	305.3	300.0
HO1	O1	C1	H12	54.8	60.0
C2	C1	O1	HO1	180.0	180.0
O1	C1	C2	H11	125.3	120.0
O1	C1	C2	H12	234.8	240.0
H11	C1	C2	H12	109.5	120.0
O2	C2	C1	H21	234.7	240.0
O2	C2	C1	H22	125.3	120.1
C1	C2	O2	C3	118.9	180.0
H21	C2	C1	H22	250.6	240.1
H11	C1	O1	HO1	305.3	300.0
O1	C1	H11	C2	233.0	240.0
O1	C1	H11	H12	116.5	120.0
C2	C1	H11	H12	243.5	240.0
H11	C1	C2	O2	315.0	300.0
H11	C1	C2	H21	80.3	60.0
H11	C1	C2	H22	189.7	180.0
H12	C1	O1	HO1	54.8	60.0
O1	C1	H12	C2	127.0	120.0
O1	C1	H12	H11	243.5	240.0
C2	C1	H12	H11	116.5	120.0
H12	C1	C2	O2	205.5	180.0
H12	C1	C2	H21	330.8	300.0
H12	C1	C2	H22	80.2	60.0
O2	C2	C1	H11	315.0	300.0
O2	C2	C1	H12	205.5	180.0
C1	C2	O2	H21	125.3	120.0
C1	C2	O2	H22	234.7	240.0
H21	C2	O2	H22	109.4	120.0
C2	O2	C3	C4	128.9	179.9
C2	O2	C3	H31	254.2	299.9
C2	O2	C3	H32	3.7	59.9
H21	C2	C1	H11	80.3	60.0
H21	C2	C1	H12	330.8	300.0
C1	C2	H21	O2	234.3	240.0
C1	C2	H21	H22	117.2	119.9
O2	C2	H21	H22	242.9	239.9
H21	C2	O2	C3	353.5	60.1
H22	C2	C1	H11	189.7	180.0
H22	C2	C1	H12	80.2	60.0
C1	C2	H22	O2	125.7	120.1
C1	C2	H22	H21	242.8	240.1
O2	C2	H22	H21	117.1	120.0
H22	C2	O2	C3	244.2	300.1
C3	O2	C2	H21	353.5	60.1
C3	O2	C2	H22	244.2	300.1
C4	C3	O2	H31	234.8	240.0
C4	C3	O2	H32	125.3	120.0
O2	C3	C4	O3	218.4	59.9
O2	C3	C4	H41	343.7	180.0
O2	C3	C4	H42	93.2	300.0
H31	C3	O2	H32	250.5	240.0
O2	C3	C4	H31	125.2	120.0
O2	C3	C4	H32	234.8	239.9
H31	C3	C4	H32	109.5	119.9
O3	C4	C3	H41	234.8	240.0
O3	C4	C3	H42	125.3	119.9
C3	C4	O3	C5	196.7	180.0
H41	C4	C3	H42	250.5	240.0
O2	C3	H31	C4	236.9	240.0
O2	C3	H31	H32	118.4	120.1
C4	C3	H31	H32	241.5	240.1
H31	C3	C4	O3	93.2	299.9
H31	C3	C4	H41	218.5	60.0
H31	C3	C4	H42	327.9	180.0
O2	C3	H32	C4	123.1	120.1
O2	C3	H32	H31	241.6	240.0
C4	C3	H32	H31	118.5	119.9
H32	C3	C4	O3	343.7	180.0
H32	C3	C4	H41	108.9	300.0
H32	C3	C4	H42	218.4	60.1
O3	C4	C3	H31	93.2	299.9
O3	C4	C3	H32	343.7	180.0
C3	C4	O3	H41	125.3	120.0
C3	C4	O3	H42	234.7	240.1
H41	C4	O3	H42	109.4	120.1
C4	O3	C5	C6	62.0	180.0
C4	O3	C5	H51	187.3	300.1
C4	O3	C5	H52	296.7	60.1
H41	C4	C3	H31	218.5	60.0
H41	C4	C3	H32	108.9	300.0
C3	C4	H41	O3	236.9	240.0
C3	C4	H41	H42	118.5	120.0
O3	C4	H41	H42	241.6	239.9
H41	C4	O3	C5	71.5	60.0
H42	C4	C3	H31	327.9	180.0
H42	C4	C3	H32	218.4	60.1
C3	C4	H42	O3	123.1	119.9
C3	C4	H42	H41	241.5	240.0
O3	C4	H42	H41	118.4	120.1
H42	C4	O3	C5	322.0	299.9
C5	O3	C4	H41	71.5	60.0
C5	O3	C4	H42	322.0	299.9
C6	C5	O3	H51	234.7	239.9
C6	C5	O3	H52	125.3	120.0
O3	C5	C6	O4	163.5	60.0
O3	C5	C6	H61	288.8	180.0
O3	C5	C6	H62	38.3	300.1
H51	C5	O3	H52	250.6	240.0
O3	C5	C6	H51	125.3	120.1
O3	C5	C6	H52	234.7	240.0
H51	C5	C6	H52	109.4	119.9
O4	C6	C5	H61	234.8	240.0
O4	C6	C5	H62	125.3	119.9
C5	C6	O4	C7	252.1	180.0
H61	C6	C5	H62	250.5	239.9
O3	C5	H51	C6	236.6	239.9
O3	C5	H51	H52	118.3	120.0
C6	C5	H51	H52	241.7	240.1
H51	C5	C6	O4	38.2	299.9
H51	C5	C6	H61	163.5	59.9
H51	C5	C6	H62	273.0	180.0
O3	C5	H52	C6	123.4	120.0
O3	C5	H52	H51	241.7	240.0
C6	C5	H52	H51	118.3	120.0
H52	C5	C6	O4	288.8	180.0
H52	C5	C6	H61	54.0	300.0
H52	C5	C6	H62	163.5	60.0
O4	C6	C5	H51	38.2	299.9
O4	C6	C5	H52	288.8	180.0
C5	C6	O4	H61	125.2	120.0
C5	C6	O4	H62	234.8	240.0
H61	C6	O4	H62	109.5	120.0
C6	O4	C7	C8	181.7	180.0
C6	O4	C7	H71	307.0	300.1
C6	O4	C7	H72	56.5	60.0
H61	C6	C5	H51	163.5	59.9
H61	C6	C5	H52	54.0	300.0
C5	C6	H61	O4	235.8	240.0
C5	C6	H61	H62	117.9	120.0
O4	C6	H61	H62	242.1	240.0
H61	C6	O4	C7	126.8	59.9
H62	C6	C5	H51	273.0	180.0
H62	C6	C5	H52	163.5	60.0
C5	C6	H62	O4	124.2	120.0
C5	C6	H62	H61	242.1	239.9
O4	C6	H62	H61	117.9	120.0
H62	C6	O4	C7	17.3	299.9
C7	O4	C6	H61	126.8	59.9
C7	O4	C6	H62	17.3	299.9
C8	C7	O4	H71	234.7	240.0
C8	C7	O4	H72	125.2	120.0
O4	C7	C8	O5	81.3	60.0
O4	C7	C8	H81	206.6	180.0
O4	C7	C8	H82	316.1	300.0
H71	C7	O4	H72	250.5	240.1
O4	C7	C8	H71	125.2	120.0
O4	C7	C8	H72	234.8	240.0
H71	C7	C8	H72	109.5	120.0
O5	C8	C7	H81	234.7	240.0
O5	C8	C7	H82	125.2	120.0
C7	C8	O5	HO5	180.0	180.0
H81	C8	C7	H82	250.5	240.0
O4	C7	H71	C8	235.6	239.9
O4	C7	H71	H72	117.8	120.0
C8	C7	H71	H72	242.2	240.0
H71	C7	C8	O5	316.1	300.0
H71	C7	C8	H81	81.3	60.0
H71	C7	C8	H82	190.8	180.0
O4	C7	H72	C8	124.4	120.0
O4	C7	H72	H71	242.2	240.0
C8	C7	H72	H71	117.9	120.0
H72	C7	C8	O5	206.5	180.0
H72	C7	C8	H81	331.8	300.1
H72	C7	C8	H82	81.3	60.0
O5	C8	C7	H71	316.1	300.0
O5	C8	C7	H72	206.5	180.0
C7	C8	O5	H81	125.3	120.1
C7	C8	O5	H82	234.8	240.0
H81	C8	O5	H82	109.5	119.9
H81	C8	C7	H71	81.3	60.0
H81	C8	C7	H72	331.8	300.1
C7	C8	H81	O5	235.6	240.0
C7	C8	H81	H82	117.8	120.0
O5	C8	H81	H82	242.2	240.0
H81	C8	O5	HO5	54.8	60.0
H82	C8	C7	H71	190.8	180.0
H82	C8	C7	H72	81.3	60.0
C7	C8	H82	O5	124.3	120.0
C7	C8	H82	H81	242.2	240.0
O5	C8	H82	H81	117.9	119.9
H82	C8	O5	HO5	305.3	300.0
HO5	O5	C8	H81	54.8	60.0
HO5	O5	C8	H82	305.3	300.0