PDB Chemical Component PG1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PG1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.841 1.829
S1 C5 1.813 1.824
C2 C3 1.579 1.540
C2 C9 1.526 1.528
C2 C10 1.523 1.535
C3 N4 1.459 1.465
C3 C11 1.579 1.496
C3 H12 1.115 1.098
N4 C5 1.510 1.467
N4 H11 1.020 1.021
C5 C6 1.603 1.525
C5 H10 1.115 1.095
C6 C7 1.578 1.520
C6 N14 1.478 1.439
C6 H9 1.115 1.094
C7 O8 1.211 1.227
C7 OG 1.365 1.362
C9 H14 1.115 1.095
C9 H15 1.115 1.094
C9 H16 1.115 1.095
C10 H17 1.115 1.094
C10 H18 1.115 1.094
C10 H19 1.115 1.094
C11 O12 1.232 1.263
C11 O13 1.227 1.262
N14 C15 1.391 1.390
N14 H8 1.020 1.018
C15 O16 1.248 1.228
C15 C17 1.535 1.516
C17 C18 1.530 1.506
C17 H6 1.115 1.097
C17 H7 1.115 1.098
C18 C19 1.412 1.388
C18 C23 1.418 1.387
C19 C20 1.390 1.395
C19 H5 1.103 1.087
C20 C21 1.464 1.395
C20 H4 1.103 1.086
C21 C22 1.386 1.394
C21 H3 1.103 1.087
C22 C23 1.417 1.396
C22 HC22 1.103 1.086
C23 H1 1.103 1.086
N CA 1.454 1.447
N H 1.020 1.004
N H2 1.020 1.003
CA CB 1.511 1.527
CA C 1.523 1.540
CA H22 1.115 1.097
CB OG 1.415 1.432
CB HB2 1.115 1.095
CB HB3 1.115 1.096
C O 1.236 1.262
C OXT   1.266

Bond Angles for PG1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 96.4 93.6
S1 C2 C3 105.1 101.4
S1 C2 C9 107.1 110.0
S1 C2 C10 106.0 108.0
S1 C5 N4 103.8 108.2
S1 C5 C6 109.4 110.0
S1 C5 H10 111.7 108.7
C3 C2 C9 113.8 111.9
C3 C2 C10 112.3 114.7
C2 C3 N4 105.5 108.2
C2 C3 C11 115.0 113.1
C2 C3 H12 109.1 111.5
C9 C2 C10 111.9 110.5
C2 C9 H14 113.1 110.6
C2 C9 H15 107.1 110.6
C2 C9 H16 113.1 110.6
C2 C10 H17 113.5 110.5
C2 C10 H18 106.0 110.6
C2 C10 H19 113.5 110.5
N4 C3 C11 111.3 107.3
N4 C3 H12 113.0 109.8
C3 N4 C5 119.5 107.7
C3 N4 H11 108.6 108.4
C11 C3 H12 103.1 106.8
C3 C11 O12 119.2 114.8
C3 C11 O13 116.7 115.3
C5 N4 H11 108.6 107.7
N4 C5 C6 104.8 112.0
N4 C5 H10 115.9 109.6
C6 C5 H10 110.8 108.3
C5 C6 C7 106.1 110.2
C5 C6 N14 119.4 109.9
C5 C6 H9 102.3 110.4
C7 C6 N14 98.0 112.1
C7 C6 H9 122.4 107.5
C6 C7 O8 127.4 122.7
C6 C7 OG 106.8 112.2
N14 C6 H9 109.9 106.5
C6 N14 C15 120.8 122.8
C6 N14 H8 122.7 118.6
O8 C7 OG 125.8 125.1
C7 OG CB 111.6 115.8
H14 C9 H15 113.1 108.3
H14 C9 H16 97.3 108.3
H15 C9 H16 113.1 108.3
H17 C10 H18 113.5 108.4
H17 C10 H19 96.9 108.3
H18 C10 H19 113.5 108.4
O12 C11 O13 124.1 129.9
C15 N14 H8 116.5 118.6
N14 C15 O16 122.1 124.8
N14 C15 C17 118.9 111.7
O16 C15 C17 118.9 123.5
C15 C17 C18 117.4 113.4
C15 C17 H6 109.3 108.8
C15 C17 H7 109.3 108.6
C18 C17 H6 109.3 109.6
C18 C17 H7 109.3 109.7
C17 C18 C19 119.0 119.4
C17 C18 C23 121.6 119.5
H6 C17 H7 100.8 106.6
C19 C18 C23 119.4 121.1
C18 C19 C20 121.1 119.5
C18 C19 H5 120.2 121.0
C18 C23 C22 120.0 119.5
C18 C23 H1 120.0 121.1
C20 C19 H5 118.7 119.5
C19 C20 C21 119.5 120.0
C19 C20 H4 117.7 120.0
C21 C20 H4 122.8 120.0
C20 C21 C22 118.9 120.0
C20 C21 H3 123.2 119.9
C22 C21 H3 117.9 120.0
C21 C22 C23 121.0 120.0
C21 C22 HC22 118.4 120.0
C23 C22 HC22 120.6 120.0
C22 C23 H1 119.9 119.5
CA N H 112.2 118.7
CA N H2 109.6 118.8
N CA CB 109.6 110.1
N CA C 116.7 111.4
N CA H22 103.8 105.6
H N H2 112.1 121.1
CB CA C 107.8 115.8
CB CA H22 113.4 107.6
CA CB OG 112.9 111.3
CA CB HB2 111.0 111.6
CA CB HB3 111.0 110.5
C CA H22 105.8 105.6
CA C O 119.6 116.3
CA C OXT   114.7
OG CB HB2 111.0 108.3
OG CB HB3 110.9 107.3
HB2 CB HB3 99.3 107.8
O C OXT   129.0

Torsion Angles for PG1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 N4 8.8 358.4
C2 S1 C5 C6 120.2 121.0
C2 S1 C5 H10 243.3 239.5
C3 C2 S1 C9 238.6 118.5
C3 C2 S1 C10 119.0 239.1
S1 C2 C3 N4 31.5 44.1
S1 C2 C3 C11 154.6 162.8
S1 C2 C3 H12 269.8 283.2
C9 C2 S1 C10 240.4 120.6
S1 C2 C9 H14 54.7 276.5
S1 C2 C9 H15 180.0 36.5
S1 C2 C9 H16 305.3 156.5
S1 C2 C10 H17 54.7 82.2
S1 C2 C10 H18 180.0 202.2
S1 C2 C10 H19 305.3 322.2
C5 S1 C2 C3 336.1 336.8
C5 S1 C2 C9 97.5 218.2
C5 S1 C2 C10 217.1 97.6
C3 N4 C5 S1 11.1 28.1
S1 C5 N4 H11 136.4 271.5
N4 C5 S1 C6 248.6 237.4
N4 C5 S1 H10 125.5 118.9
C6 C5 S1 H10 237.0 241.5
S1 C5 C6 C7 221.6 58.7
S1 C5 C6 N14 330.7 182.9
S1 C5 C6 H9 92.2 300.1
C3 C2 S1 C5 336.1 336.8
S1 C2 C3 C9 116.9 242.8
S1 C2 C3 C10 245.3 116.0
C9 C2 C3 C10 128.3 233.2
C3 C2 C9 H14 170.5 164.6
C3 C2 C9 H15 295.7 284.6
C3 C2 C9 H16 61.0 44.6
C3 C2 C10 H17 300.5 194.4
C3 C2 C10 H18 65.8 314.4
C3 C2 C10 H19 191.0 74.4
N4 C3 C2 C11 236.9 241.3
N4 C3 C2 H12 121.7 120.9
C2 C3 N4 C5 331.1 311.7
C2 C3 N4 H11 205.9 68.0
C11 C3 C2 H12 244.8 239.6
C2 C3 C11 O12 263.2 213.1
C2 C3 C11 O13 82.5 33.0
C9 C2 S1 C5 97.5 218.2
S1 C2 C9 C3 244.3 111.9
S1 C2 C9 C10 115.7 240.9
C3 C2 C9 C10 231.4 129.0
C9 C2 C3 N4 274.6 161.3
C9 C2 C3 C11 37.7 280.0
C9 C2 C3 H12 152.9 40.4
C9 C2 C10 H17 171.1 321.9
C9 C2 C10 H18 296.4 81.9
C9 C2 C10 H19 61.7 201.9
H14 C9 C2 H15 234.7 240.0
H14 C9 C2 H16 109.4 120.0
H15 C9 C2 H16 234.7 240.0
C10 C2 S1 C5 217.1 97.6
S1 C2 C10 C3 114.2 247.8
S1 C2 C10 C9 243.6 120.3
C3 C2 C10 C9 129.4 232.5
C10 C2 C3 N4 146.3 288.1
C10 C2 C3 C11 269.3 46.8
C10 C2 C3 H12 24.5 167.2
C10 C2 C9 H14 299.0 35.6
C10 C2 C9 H15 64.3 155.5
C10 C2 C9 H16 189.6 275.6
H17 C10 C2 H18 234.7 240.0
H17 C10 C2 H19 109.5 119.9
H18 C10 C2 H19 234.7 239.9
S1 C5 N4 C3 11.1 28.1
N4 C3 C2 C9 274.6 161.3
N4 C3 C2 C10 146.3 288.1
C2 C3 N4 C11 125.4 122.3
C2 C3 N4 H12 240.8 238.1
C11 C3 N4 H12 115.4 115.8
N4 C3 C11 O12 23.1 332.3
N4 C3 C11 O13 202.4 152.3
C5 N4 C3 H11 125.3 243.7
C3 N4 C5 C6 256.4 266.7
C3 N4 C5 H10 133.9 146.5
C11 C3 C2 C9 37.7 280.0
C11 C3 C2 C10 269.3 46.8
C2 C3 C11 N4 240.1 240.7
C2 C3 C11 H12 118.7 123.0
N4 C3 C11 H12 238.5 242.3
C11 C3 N4 C5 205.7 189.4
C11 C3 N4 H11 80.5 305.7
O12 C11 C3 O13 180.7 180.0
H12 C3 C2 C9 152.9 40.4
H12 C3 C2 C10 24.5 167.2
C2 C3 H12 N4 117.0 120.0
C2 C3 H12 C11 237.3 236.0
N4 C3 H12 C11 120.3 116.1
H12 C3 N4 C5 90.3 73.7
H12 C3 N4 H11 325.0 189.9
H12 C3 C11 O12 144.5 90.0
H12 C3 C11 O13 323.8 270.0
S1 C5 N4 C6 114.7 121.4
S1 C5 N4 H10 237.1 241.6
C5 N4 C3 C11 205.7 189.4
C5 N4 C3 H12 90.3 73.7
C3 N4 C5 H11 234.7 116.7
C6 C5 N4 H10 122.4 120.2
N4 C5 C6 C7 332.3 179.1
N4 C5 C6 N14 81.5 303.2
N4 C5 C6 H9 203.0 60.4
H11 N4 C3 C11 80.5 305.7
H11 N4 C3 H12 325.0 189.9
C3 N4 H11 C5 131.4 243.8
H11 N4 C5 C6 21.6 150.1
H11 N4 C5 H10 259.2 29.8
S1 C5 C6 N4 249.3 239.7
S1 C5 C6 H10 123.6 118.7
C6 C5 N4 H11 21.6 150.1
N4 C5 C6 H10 234.3 239.0
C7 C6 C5 N14 250.8 235.9
C7 C6 C5 H9 129.3 118.6
C5 C6 C7 O8 118.5 89.6
C5 C6 C7 OG 301.6 269.2
N14 C6 C5 H9 238.5 242.7
C5 C6 N14 C15 88.2 149.6
C5 C6 N14 H8 268.2 329.6
S1 C5 H10 N4 118.5 118.0
S1 C5 H10 C6 237.7 240.5
H10 C5 N4 H11 259.2 29.8
N4 C5 H10 C6 119.2 122.4
H10 C5 C6 C7 98.0 300.0
H10 C5 C6 N14 207.1 64.1
H10 C5 C6 H9 328.6 181.4
C7 C6 C5 H10 98.0 300.0
C5 C6 C7 N14 123.8 122.9
C5 C6 C7 H9 243.5 239.6
N14 C6 C7 H9 119.7 116.8
C7 C6 N14 C15 201.8 272.6
C7 C6 N14 H8 21.8 92.6
O8 C7 C6 OG 176.9 180.5
C6 C7 OG CB 174.1 180.5
N14 C6 C5 H10 207.1 64.1
C5 C6 N14 C7 246.4 237.0
C5 C6 N14 H9 117.6 119.6
C7 C6 N14 H9 231.2 242.7
N14 C6 C7 O8 354.7 326.8
N14 C6 C7 OG 177.8 146.3
C15 N14 C6 H8 180.0 180.0
C6 N14 C15 O16 1.0 0.1
C6 N14 C15 C17 183.6 179.8
H9 C6 C5 H10 328.6 181.4
C5 C6 H9 C7 118.3 120.3
C5 C6 H9 N14 232.2 240.7
C7 C6 H9 N14 113.9 120.4
H9 C6 C7 O8 235.0 210.0
H9 C6 C7 OG 58.1 29.5
H9 C6 N14 C15 330.6 29.9
H9 C6 N14 H8 150.6 210.0
O8 C7 C6 N14 354.7 326.8
O8 C7 C6 H9 235.0 210.0
C6 C7 O8 OG 183.6 179.5
O8 C7 OG CB 357.1 0.0
OG C7 C6 N14 177.8 146.3
OG C7 C6 H9 58.1 29.5
C6 C7 OG O8 177.0 180.5
CA CB OG C7 87.3 180.0
C7 OG CB HB2 212.6 57.0
C7 OG CB HB3 322.1 301.0
H14 C9 C2 C10 299.0 35.6
C2 C9 H14 H15 122.0 121.3
C2 C9 H14 H16 241.0 238.6
H15 C9 H14 H16 119.0 117.3
H15 C9 C2 C10 64.3 155.5
C2 C9 H15 H14 234.7 238.7
C2 C9 H15 H16 125.3 121.4
H14 C9 H15 H16 250.5 242.7
H16 C9 C2 C10 189.6 275.6
C2 C9 H16 H14 119.0 121.4
C2 C9 H16 H15 238.0 238.6
H14 C9 H16 H15 119.0 117.3
C2 C10 H17 H18 121.1 121.3
C2 C10 H17 H19 240.6 238.7
H18 C10 H17 H19 119.5 117.4
C2 C10 H18 H17 234.7 238.7
C2 C10 H18 H19 125.3 121.3
H17 C10 H18 H19 250.5 242.6
C2 C10 H19 H17 119.4 121.2
C2 C10 H19 H18 238.9 238.6
H17 C10 H19 H18 119.4 117.4
O12 C11 C3 H12 144.5 90.0
C3 C11 O12 O13 179.2 180.0
O13 C11 C3 H12 323.8 270.0
C3 C11 O13 O12 180.8 180.0
C15 N14 C6 H9 330.6 29.9
C6 N14 C15 H8 180.0 180.0
O16 C15 N14 C17 177.3 180.3
N14 C15 C17 C18 97.1 120.3
N14 C15 C17 H6 331.8 358.1
N14 C15 C17 H7 222.3 242.5
H8 N14 C6 H9 150.6 210.0
C6 N14 H8 C15 180.0 180.0
H8 N14 C15 O16 181.0 180.1
H8 N14 C15 C17 3.7 359.8
O16 C15 N14 H8 181.0 180.1
N14 C15 O16 C17 182.7 179.7
O16 C15 C17 C18 279.7 300.0
O16 C15 C17 H6 154.4 177.8
O16 C15 C17 H7 44.9 62.2
C17 C15 N14 H8 3.7 359.8
N14 C15 C17 O16 177.4 180.3
C18 C17 C15 H6 125.3 122.2
C18 C17 C15 H7 234.8 237.8
C15 C17 C18 C19 55.8 270.0
C15 C17 C18 C23 235.8 90.0
H6 C17 C15 H7 109.5 115.6
C15 C17 C18 H6 234.8 238.2
C15 C17 C18 H7 125.2 121.6
H6 C17 C18 H7 250.5 243.4
C19 C18 C17 C23 180.0 180.0
C17 C18 C19 C20 180.1 180.0
C17 C18 C19 H5 0.1 360.0
C17 C18 C23 C22 179.9 180.0
C17 C18 C23 H1 359.9 0.1
C15 C17 H6 C18 129.8 124.5
C15 C17 H6 H7 244.9 243.1
C18 C17 H6 H7 115.1 118.6
H6 C17 C18 C19 181.1 31.8
H6 C17 C18 C23 1.0 211.7
C15 C17 H7 C18 230.2 235.6
C15 C17 H7 H6 115.1 117.1
C18 C17 H7 H6 244.9 241.5
H7 C17 C18 C19 290.6 148.4
H7 C17 C18 C23 110.5 328.4
C19 C18 C17 H6 181.1 31.8
C19 C18 C17 H7 290.6 148.4
C17 C18 C19 C23 180.0 180.0
C19 C18 C23 C22 359.8 360.0
C19 C18 C23 H1 179.8 180.0
C20 C19 C18 H5 180.0 180.0
C18 C19 C20 C21 0.1 0.0
C18 C19 C20 H4 180.1 180.0
C23 C18 C17 H6 1.0 211.7
C23 C18 C17 H7 110.5 328.4
C17 C18 C23 C19 180.0 180.0
C23 C18 C19 C20 0.1 0.0
C23 C18 C19 H5 180.1 180.0
C21 C22 C23 C18 0.1 360.0
C18 C23 C22 HC22 180.1 180.0
C22 C23 C18 H1 180.0 180.0
C20 C19 C18 C23 0.1 0.0
C18 C19 C20 H5 180.0 180.0
C21 C20 C19 H4 180.0 180.0
C19 C20 C21 C22 359.9 359.9
C19 C20 C21 H3 179.9 180.0
H5 C19 C18 C23 180.1 180.0
C18 C19 H5 C20 180.0 180.0
H5 C19 C20 C21 180.0 180.0
H5 C19 C20 H4 0.0 360.0
C21 C20 C19 H5 180.0 180.0
C19 C20 C21 H4 180.0 180.0
C22 C21 C20 H3 180.0 180.0
C20 C21 C22 C23 0.0 0.0
C20 C21 C22 HC22 180.0 180.0
H4 C20 C19 H5 0.0 360.0
C19 C20 H4 C21 180.0 180.0
H4 C20 C21 C22 179.9 180.0
H4 C20 C21 H3 359.9 0.0
C18 C23 C22 C21 0.1 360.0
C22 C21 C20 H4 179.9 180.0
C20 C21 C22 H3 180.0 180.0
C23 C22 C21 HC22 180.0 180.0
C21 C22 C23 H1 180.1 179.9
H3 C21 C20 H4 359.9 0.0
C20 C21 H3 C22 180.0 180.0
H3 C21 C22 C23 180.0 180.0
H3 C21 C22 HC22 0.0 360.0
C18 C23 C22 H1 180.0 180.0
C23 C22 C21 H3 180.0 180.0
C21 C22 C23 HC22 180.0 180.0
HC22 C22 C21 H3 0.0 360.0
C21 C22 HC22 C23 180.0 180.0
HC22 C22 C23 H1 0.1 360.0
C18 C23 H1 C22 180.0 180.0
H1 C23 C22 HC22 0.1 360.0
H N CA H2 234.8 166.5
CB CA N C 237.3 230.1
CB CA N H22 121.4 115.9
N CA CB OG 274.0 186.5
N CA CB HB2 148.8 307.5
N CA CB HB3 39.3 67.4
C CA N H22 244.1 245.8
N CA C O 168.5 114.3
N CA C OXT   295.0
CA N H H2 123.8 193.8
H N CA CB 54.7 260.5
H N CA C 177.5 30.4
H N CA H22 293.4 144.6
CA N H2 H 234.7 166.2
H2 N CA CB 180.0 94.0
H2 N CA C 302.7 223.9
H2 N CA H22 58.6 338.1
C7 OG CB CA 87.3 180.0
CB CA N H 54.7 260.5
CB CA N H2 180.0 94.0
N CA CB C 127.9 127.5
N CA CB H22 244.5 245.4
C CA CB H22 116.7 117.8
CB CA C O 292.1 241.2
CB CA C OXT   61.9
OG CB CA HB2 125.3 238.9
OG CB CA HB3 234.7 119.1
HB2 CB CA HB3 109.4 240.1
C CA N H 177.5 30.4
C CA N H2 302.7 223.9
N CA C CB 236.3 233.1
N CA C H22 114.8 114.2
CB CA C H22 238.5 241.1
C CA CB OG 146.2 58.9
C CA CB HB2 20.9 180.0
C CA CB HB3 271.4 299.9
O C CA OXT   179.3
H22 CA N H 293.4 144.6
H22 CA N H2 58.6 338.1
N CA H22 CB 118.8 117.6
N CA H22 C 236.7 241.8
CB CA H22 C 117.8 124.2
H22 CA CB OG 29.5 301.1
H22 CA CB HB2 264.2 62.2
H22 CA CB HB3 154.8 182.0
H22 CA C O 53.7 0.1
H22 CA C OXT   180.8
OG CB CA C 146.2 58.9
OG CB CA H22 29.5 301.1
CA CB OG HB2 234.7 123.0
CA CB OG HB3 125.3 239.0
HB2 CB OG HB3 250.6 116.1
HB2 CB CA C 20.9 180.0
HB2 CB CA H22 264.2 62.2
CA CB HB2 OG 126.4 237.2
CA CB HB2 HB3 243.2 121.5
OG CB HB2 HB3 116.8 244.3
HB3 CB CA C 271.4 299.9
HB3 CB CA H22 154.8 182.0
CA CB HB3 OG 233.7 121.5
CA CB HB3 HB2 116.8 237.9
OG CB HB3 HB2 243.2 116.4
O C CA H22 53.7 0.1
CA C O OXT   180.9
OXT C CA H22   180.8
CA C OXT O   179.2