PDB Chemical Component PF5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PF5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.491 |
1.441 |
| N |
H |
1.000 |
1.006 |
| N |
H2 |
1.000 |
1.007 |
| CA |
C |
1.528 |
1.522 |
| CA |
CB |
1.527 |
1.534 |
| CA |
HA |
1.100 |
1.096 |
| CB |
CG |
1.507 |
1.510 |
| CB |
HB2 |
1.100 |
1.099 |
| CB |
HB3 |
1.100 |
1.098 |
| CG |
CD2 |
1.400 |
1.385 |
| CG |
CD1 |
1.398 |
1.387 |
| CD1 |
CE1 |
1.399 |
1.395 |
| CD1 |
FD1 |
1.349 |
1.340 |
| CD2 |
FD2 |
1.349 |
1.341 |
| CD2 |
CE2 |
1.399 |
1.395 |
| CE1 |
CZ |
1.400 |
1.395 |
| CE1 |
FE1 |
1.348 |
1.339 |
| CE2 |
FE2 |
1.347 |
1.339 |
| CE2 |
CZ |
1.401 |
1.395 |
| CZ |
FZ |
1.347 |
1.339 |
| C |
O |
1.215 |
1.227 |
| C |
OXT |
1.359 |
1.355 |
| OXT |
HXT |
0.950 |
0.980 |
Bond Angles for PF5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
119.0 |
| CA |
N |
H2 |
109.5 |
119.0 |
| N |
CA |
C |
110.6 |
111.1 |
| N |
CA |
CB |
108.6 |
111.1 |
| N |
CA |
HA |
109.7 |
106.3 |
| H |
N |
H2 |
109.4 |
120.6 |
| CB |
CA |
C |
110.6 |
109.9 |
| C |
CA |
HA |
107.7 |
106.9 |
| CA |
C |
O |
121.1 |
123.0 |
| CA |
C |
OXT |
118.4 |
114.9 |
| CB |
CA |
HA |
109.7 |
111.4 |
| CA |
CB |
CG |
107.5 |
113.0 |
| CA |
CB |
HB2 |
110.1 |
110.4 |
| CA |
CB |
HB3 |
110.6 |
110.2 |
| CG |
CB |
HB2 |
110.1 |
108.1 |
| CG |
CB |
HB3 |
110.5 |
109.7 |
| CB |
CG |
CD2 |
119.7 |
119.4 |
| CB |
CG |
CD1 |
120.1 |
119.3 |
| HB2 |
CB |
HB3 |
107.9 |
105.2 |
| CD1 |
CG |
CD2 |
120.1 |
121.3 |
| CG |
CD2 |
FD2 |
120.0 |
121.1 |
| CG |
CD2 |
CE2 |
120.0 |
119.4 |
| CG |
CD1 |
CE1 |
120.0 |
119.3 |
| CG |
CD1 |
FD1 |
120.0 |
121.1 |
| FD1 |
CD1 |
CE1 |
120.0 |
119.6 |
| CD1 |
CE1 |
CZ |
120.0 |
120.0 |
| CD1 |
CE1 |
FE1 |
120.0 |
120.0 |
| FD2 |
CD2 |
CE2 |
120.0 |
119.5 |
| CD2 |
CE2 |
FE2 |
120.0 |
120.0 |
| CD2 |
CE2 |
CZ |
119.9 |
120.0 |
| FE1 |
CE1 |
CZ |
120.0 |
120.0 |
| CE1 |
CZ |
CE2 |
120.0 |
120.0 |
| CE1 |
CZ |
FZ |
120.0 |
120.0 |
| FE2 |
CE2 |
CZ |
120.1 |
120.0 |
| CE2 |
CZ |
FZ |
120.0 |
120.0 |
| O |
C |
OXT |
120.3 |
122.2 |
| C |
OXT |
HXT |
109.5 |
114.8 |
Torsion Angles for PF5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
166.6 |
| CB |
CA |
N |
C |
238.5 |
237.2 |
| C |
CA |
N |
HA |
241.4 |
244.1 |
| N |
CA |
C |
O |
161.9 |
325.5 |
| N |
CA |
C |
OXT |
346.2 |
145.1 |
| CB |
CA |
N |
HA |
119.9 |
121.3 |
| N |
CA |
CB |
CG |
307.8 |
201.8 |
| N |
CA |
CB |
HB2 |
67.8 |
322.9 |
| N |
CA |
CB |
HB3 |
187.0 |
78.7 |
| CA |
N |
H |
H2 |
120.0 |
193.6 |
| H |
N |
CA |
C |
272.0 |
267.1 |
| H |
N |
CA |
CB |
150.5 |
144.3 |
| H |
N |
CA |
HA |
30.7 |
23.0 |
| CA |
N |
H2 |
H |
240.0 |
166.4 |
| H2 |
N |
CA |
C |
32.0 |
100.5 |
| H2 |
N |
CA |
CB |
270.5 |
337.7 |
| H2 |
N |
CA |
HA |
150.6 |
216.4 |
| C |
CA |
N |
H |
272.0 |
267.1 |
| C |
CA |
N |
H2 |
32.0 |
100.5 |
| N |
CA |
C |
CB |
239.7 |
236.5 |
| N |
CA |
C |
HA |
119.8 |
115.5 |
| CB |
CA |
C |
HA |
240.2 |
239.0 |
| C |
CA |
CB |
CG |
186.3 |
78.3 |
| C |
CA |
CB |
HB2 |
306.3 |
199.4 |
| C |
CA |
CB |
HB3 |
65.5 |
315.2 |
| O |
C |
CA |
OXT |
175.6 |
180.5 |
| CA |
C |
OXT |
HXT |
175.7 |
180.4 |
| CB |
CA |
N |
H |
150.5 |
144.3 |
| CB |
CA |
N |
H2 |
270.5 |
337.7 |
| N |
CA |
CB |
C |
121.5 |
123.5 |
| N |
CA |
CB |
HA |
240.1 |
241.7 |
| C |
CA |
CB |
HA |
118.6 |
118.3 |
| CB |
CA |
C |
O |
282.2 |
89.0 |
| CB |
CA |
C |
OXT |
106.6 |
268.5 |
| CG |
CB |
CA |
HB2 |
240.0 |
238.9 |
| CG |
CB |
CA |
HB3 |
120.8 |
123.1 |
| CA |
CB |
CG |
CD2 |
274.1 |
270.0 |
| CA |
CB |
CG |
CD1 |
90.3 |
90.0 |
| HB2 |
CB |
CA |
HB3 |
240.8 |
244.2 |
| HA |
CA |
N |
H |
30.7 |
23.0 |
| HA |
CA |
N |
H2 |
150.6 |
216.4 |
| N |
CA |
HA |
C |
239.6 |
241.2 |
| N |
CA |
HA |
CB |
119.2 |
121.1 |
| CB |
CA |
HA |
C |
120.4 |
120.1 |
| HA |
CA |
C |
O |
42.0 |
210.0 |
| HA |
CA |
C |
OXT |
226.4 |
29.5 |
| HA |
CA |
CB |
CG |
67.7 |
320.0 |
| HA |
CA |
CB |
HB2 |
187.7 |
81.2 |
| HA |
CA |
CB |
HB3 |
306.9 |
197.0 |
| CG |
CB |
CA |
C |
186.3 |
78.3 |
| CG |
CB |
CA |
HA |
67.7 |
320.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
122.4 |
| CA |
CB |
CG |
HB3 |
239.2 |
236.6 |
| HB2 |
CB |
CG |
HB3 |
119.2 |
114.2 |
| CD1 |
CG |
CB |
CD2 |
176.2 |
180.0 |
| CB |
CG |
CD2 |
FD2 |
357.0 |
359.9 |
| CB |
CG |
CD2 |
CE2 |
177.2 |
180.0 |
| CB |
CG |
CD1 |
CE1 |
184.5 |
180.0 |
| CB |
CG |
CD1 |
FD1 |
4.1 |
0.0 |
| HB2 |
CB |
CA |
C |
306.3 |
199.4 |
| HB2 |
CB |
CA |
HA |
187.7 |
81.2 |
| CA |
CB |
HB2 |
CG |
241.6 |
236.0 |
| CA |
CB |
HB2 |
HB3 |
120.8 |
118.9 |
| CG |
CB |
HB2 |
HB3 |
239.2 |
242.9 |
| HB2 |
CB |
CG |
CD2 |
154.1 |
147.6 |
| HB2 |
CB |
CG |
CD1 |
330.3 |
327.5 |
| HB3 |
CB |
CA |
C |
65.5 |
315.2 |
| HB3 |
CB |
CA |
HA |
306.9 |
197.0 |
| CA |
CB |
HB3 |
CG |
119.0 |
125.0 |
| CA |
CB |
HB3 |
HB2 |
239.5 |
241.0 |
| CG |
CB |
HB3 |
HB2 |
120.5 |
116.0 |
| HB3 |
CB |
CG |
CD2 |
34.9 |
33.4 |
| HB3 |
CB |
CG |
CD1 |
211.1 |
213.3 |
| CD2 |
CG |
CB |
HB2 |
154.1 |
147.6 |
| CD2 |
CG |
CB |
HB3 |
34.9 |
33.4 |
| CB |
CG |
CD2 |
CD1 |
176.2 |
180.0 |
| CD2 |
CG |
CD1 |
CE1 |
0.7 |
360.0 |
| CD2 |
CG |
CD1 |
FD1 |
180.3 |
180.0 |
| FD2 |
CD2 |
CG |
CE2 |
179.9 |
180.0 |
| CG |
CD2 |
CE2 |
FE2 |
178.1 |
179.9 |
| CG |
CD2 |
CE2 |
CZ |
357.9 |
360.0 |
| CD1 |
CG |
CB |
HB2 |
330.3 |
327.5 |
| CD1 |
CG |
CB |
HB3 |
211.1 |
213.3 |
| CB |
CG |
CD1 |
CD2 |
183.8 |
180.0 |
| CD1 |
CG |
CD2 |
FD2 |
180.8 |
180.0 |
| CD1 |
CG |
CD2 |
CE2 |
0.9 |
0.0 |
| FD1 |
CD1 |
CG |
CE1 |
179.6 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
358.8 |
0.0 |
| CG |
CD1 |
CE1 |
FE1 |
179.2 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
0.7 |
360.0 |
| CG |
CD1 |
CE1 |
FD1 |
179.6 |
180.0 |
| FE1 |
CE1 |
CD1 |
CZ |
180.3 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
0.0 |
360.0 |
| CD1 |
CE1 |
CZ |
FZ |
179.7 |
180.0 |
| FD1 |
CD1 |
CG |
CD2 |
180.3 |
180.0 |
| CG |
CD1 |
FD1 |
CE1 |
180.4 |
180.0 |
| FD1 |
CD1 |
CE1 |
CZ |
179.2 |
180.0 |
| FD1 |
CD1 |
CE1 |
FE1 |
359.5 |
360.0 |
| CG |
CD2 |
FD2 |
CE2 |
180.1 |
180.0 |
| FD2 |
CD2 |
CE2 |
FE2 |
358.3 |
360.0 |
| FD2 |
CD2 |
CE2 |
CZ |
178.1 |
180.0 |
| CG |
CD2 |
CE2 |
FD2 |
179.9 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
1.6 |
0.0 |
| FE2 |
CE2 |
CD2 |
CZ |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
FZ |
181.9 |
180.0 |
| CD1 |
CE1 |
CZ |
FE1 |
180.3 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
1.6 |
0.0 |
| FE2 |
CE2 |
CZ |
CE1 |
181.4 |
180.1 |
| CE2 |
CZ |
CE1 |
FZ |
180.3 |
179.9 |
| CD1 |
CE1 |
FE1 |
CZ |
179.7 |
180.0 |
| FE1 |
CE1 |
CZ |
CE2 |
179.7 |
180.0 |
| FE1 |
CE1 |
CZ |
FZ |
359.4 |
0.1 |
| CD2 |
CE2 |
FE2 |
CZ |
179.8 |
180.0 |
| CE1 |
CZ |
CE2 |
FE2 |
181.4 |
180.1 |
| FE2 |
CE2 |
CZ |
FZ |
1.7 |
360.0 |
| CD2 |
CE2 |
CZ |
FE2 |
180.2 |
180.0 |
| CE1 |
CZ |
CE2 |
FZ |
179.7 |
180.1 |
| CE1 |
CZ |
FZ |
CE2 |
180.3 |
179.9 |
| O |
C |
CA |
HA |
42.0 |
210.0 |
| CA |
C |
O |
OXT |
184.5 |
179.5 |
| O |
C |
OXT |
HXT |
0.0 |
359.9 |
| OXT |
C |
CA |
HA |
226.4 |
29.5 |
| CA |
C |
OXT |
O |
175.7 |
180.5 |