PDB Chemical Component PF1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PF1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OAD |
CAG |
1.429 |
1.430 |
OAD |
HOAD |
0.950 |
0.967 |
CAG |
CAH |
1.543 |
1.530 |
CAG |
HAG1 |
1.100 |
1.089 |
CAG |
HAG2 |
1.100 |
1.090 |
CAH |
NAO |
1.470 |
1.465 |
CAH |
HAH1 |
1.100 |
1.090 |
CAH |
HAH2 |
1.100 |
1.090 |
NAO |
CAE |
1.331 |
1.347 |
NAO |
CAI |
1.476 |
1.466 |
CAE |
OAC |
1.228 |
1.213 |
CAE |
HAE |
1.080 |
1.080 |
CAI |
C5 |
1.532 |
1.507 |
CAI |
HAI1 |
1.100 |
1.090 |
CAI |
HAI2 |
1.100 |
1.090 |
C5 |
C6 |
1.402 |
1.382 |
C5 |
C4 |
1.401 |
1.397 |
C6 |
N1 |
1.333 |
1.325 |
C6 |
H6 |
1.080 |
1.079 |
N1 |
C2 |
1.343 |
1.319 |
C2 |
CAA |
1.531 |
1.506 |
C2 |
N3 |
1.351 |
1.318 |
CAA |
HAA1 |
1.100 |
1.090 |
CAA |
HAA2 |
1.100 |
1.090 |
CAA |
HAA3 |
1.100 |
1.090 |
N3 |
C4 |
1.346 |
1.329 |
C4 |
NAB |
1.342 |
1.385 |
NAB |
HAB1 |
1.000 |
0.970 |
NAB |
HAB2 |
1.000 |
0.970 |
Bond Angles for PF1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CAG |
OAD |
HOAD |
109.5 |
114.0 |
OAD |
CAG |
CAH |
109.9 |
109.4 |
OAD |
CAG |
HAG1 |
109.3 |
109.5 |
OAD |
CAG |
HAG2 |
109.2 |
109.4 |
CAH |
CAG |
HAG1 |
109.3 |
109.5 |
CAH |
CAG |
HAG2 |
109.2 |
109.4 |
CAG |
CAH |
NAO |
110.4 |
109.5 |
CAG |
CAH |
HAH1 |
109.2 |
109.5 |
CAG |
CAH |
HAH2 |
108.9 |
109.5 |
HAG1 |
CAG |
HAG2 |
109.9 |
109.5 |
NAO |
CAH |
HAH1 |
109.1 |
109.5 |
NAO |
CAH |
HAH2 |
108.9 |
109.5 |
CAH |
NAO |
CAE |
120.0 |
120.0 |
CAH |
NAO |
CAI |
120.3 |
119.9 |
HAH1 |
CAH |
HAH2 |
110.2 |
109.4 |
CAE |
NAO |
CAI |
119.8 |
120.0 |
NAO |
CAE |
OAC |
123.4 |
120.0 |
NAO |
CAE |
HAE |
118.3 |
120.0 |
NAO |
CAI |
C5 |
110.5 |
109.5 |
NAO |
CAI |
HAI1 |
109.1 |
109.4 |
NAO |
CAI |
HAI2 |
108.9 |
109.5 |
OAC |
CAE |
HAE |
118.3 |
120.0 |
C5 |
CAI |
HAI1 |
109.2 |
109.4 |
C5 |
CAI |
HAI2 |
108.9 |
109.5 |
CAI |
C5 |
C6 |
115.9 |
120.8 |
CAI |
C5 |
C4 |
127.0 |
120.8 |
HAI1 |
CAI |
HAI2 |
110.3 |
109.4 |
C6 |
C5 |
C4 |
117.1 |
118.3 |
C5 |
C6 |
N1 |
120.9 |
119.2 |
C5 |
C6 |
H6 |
119.6 |
120.4 |
C5 |
C4 |
N3 |
119.4 |
118.9 |
C5 |
C4 |
NAB |
122.6 |
120.5 |
N1 |
C6 |
H6 |
119.6 |
120.4 |
C6 |
N1 |
C2 |
121.1 |
121.0 |
N1 |
C2 |
CAA |
119.9 |
119.1 |
N1 |
C2 |
N3 |
119.8 |
121.8 |
CAA |
C2 |
N3 |
120.3 |
119.1 |
C2 |
CAA |
HAA1 |
109.5 |
109.5 |
C2 |
CAA |
HAA2 |
109.5 |
109.5 |
C2 |
CAA |
HAA3 |
109.5 |
109.5 |
C2 |
N3 |
C4 |
121.7 |
120.7 |
HAA1 |
CAA |
HAA2 |
109.5 |
109.5 |
HAA1 |
CAA |
HAA3 |
109.4 |
109.5 |
HAA2 |
CAA |
HAA3 |
109.5 |
109.4 |
N3 |
C4 |
NAB |
118.0 |
120.6 |
C4 |
NAB |
HAB1 |
109.5 |
120.0 |
C4 |
NAB |
HAB2 |
109.5 |
120.0 |
HAB1 |
NAB |
HAB2 |
109.4 |
119.9 |
Torsion Angles for PF1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CAH |
CAG |
OAD |
HAG1 |
240.0 |
240.0 |
CAH |
CAG |
OAD |
HAG2 |
119.8 |
119.9 |
OAD |
CAG |
CAH |
NAO |
60.5 |
65.1 |
OAD |
CAG |
CAH |
HAH1 |
180.5 |
185.0 |
OAD |
CAG |
CAH |
HAH2 |
300.9 |
305.0 |
HAG1 |
CAG |
OAD |
HAG2 |
239.8 |
239.9 |
HOAD |
OAD |
CAG |
CAH |
281.9 |
180.0 |
HOAD |
OAD |
CAG |
HAG1 |
41.9 |
300.0 |
HOAD |
OAD |
CAG |
HAG2 |
162.1 |
60.1 |
CAH |
CAG |
OAD |
HOAD |
281.9 |
180.0 |
OAD |
CAG |
CAH |
HAG1 |
120.0 |
120.0 |
OAD |
CAG |
CAH |
HAG2 |
240.2 |
240.1 |
HAG1 |
CAG |
CAH |
HAG2 |
120.2 |
120.0 |
NAO |
CAH |
CAG |
HAH1 |
240.0 |
240.0 |
NAO |
CAH |
CAG |
HAH2 |
119.6 |
120.0 |
CAG |
CAH |
NAO |
CAE |
268.2 |
90.0 |
CAG |
CAH |
NAO |
CAI |
88.1 |
270.0 |
HAH1 |
CAH |
CAG |
HAH2 |
239.6 |
240.0 |
HAG1 |
CAG |
OAD |
HOAD |
41.9 |
300.0 |
OAD |
CAG |
HAG1 |
CAH |
239.6 |
240.0 |
OAD |
CAG |
HAG1 |
HAG2 |
119.8 |
120.0 |
CAH |
CAG |
HAG1 |
HAG2 |
240.2 |
240.0 |
HAG1 |
CAG |
CAH |
NAO |
300.5 |
305.0 |
HAG1 |
CAG |
CAH |
HAH1 |
60.5 |
65.0 |
HAG1 |
CAG |
CAH |
HAH2 |
180.9 |
185.0 |
HAG2 |
CAG |
OAD |
HOAD |
162.1 |
60.1 |
OAD |
CAG |
HAG2 |
CAH |
120.2 |
119.9 |
OAD |
CAG |
HAG2 |
HAG1 |
240.1 |
239.9 |
CAH |
CAG |
HAG2 |
HAG1 |
119.9 |
120.0 |
HAG2 |
CAG |
CAH |
NAO |
180.3 |
185.0 |
HAG2 |
CAG |
CAH |
HAH1 |
300.3 |
305.0 |
HAG2 |
CAG |
CAH |
HAH2 |
60.7 |
64.9 |
NAO |
CAH |
CAG |
HAG1 |
300.5 |
305.0 |
NAO |
CAH |
CAG |
HAG2 |
180.3 |
185.0 |
CAG |
CAH |
NAO |
HAH1 |
120.0 |
120.0 |
CAG |
CAH |
NAO |
HAH2 |
240.4 |
240.0 |
HAH1 |
CAH |
NAO |
HAH2 |
120.4 |
120.0 |
CAE |
NAO |
CAH |
CAI |
180.1 |
180.0 |
CAH |
NAO |
CAE |
OAC |
180.1 |
174.6 |
CAH |
NAO |
CAE |
HAE |
0.1 |
354.6 |
CAH |
NAO |
CAI |
C5 |
78.0 |
97.1 |
CAH |
NAO |
CAI |
HAI1 |
198.1 |
217.1 |
CAH |
NAO |
CAI |
HAI2 |
318.5 |
337.0 |
HAH1 |
CAH |
CAG |
HAG1 |
60.5 |
65.0 |
HAH1 |
CAH |
CAG |
HAG2 |
300.3 |
305.0 |
CAG |
CAH |
HAH1 |
NAO |
239.2 |
240.0 |
CAG |
CAH |
HAH1 |
HAH2 |
119.6 |
120.0 |
NAO |
CAH |
HAH1 |
HAH2 |
240.4 |
240.0 |
HAH1 |
CAH |
NAO |
CAE |
148.2 |
330.0 |
HAH1 |
CAH |
NAO |
CAI |
328.1 |
150.0 |
HAH2 |
CAH |
CAG |
HAG1 |
180.9 |
185.0 |
HAH2 |
CAH |
CAG |
HAG2 |
60.7 |
64.9 |
CAG |
CAH |
HAH2 |
NAO |
120.5 |
120.0 |
CAG |
CAH |
HAH2 |
HAH1 |
240.3 |
240.0 |
NAO |
CAH |
HAH2 |
HAH1 |
119.7 |
120.0 |
HAH2 |
CAH |
NAO |
CAE |
27.8 |
210.0 |
HAH2 |
CAH |
NAO |
CAI |
207.7 |
30.0 |
CAE |
NAO |
CAH |
HAH1 |
148.2 |
330.0 |
CAE |
NAO |
CAH |
HAH2 |
27.8 |
210.0 |
CAH |
NAO |
CAE |
CAI |
179.9 |
180.0 |
CAE |
NAO |
CAI |
C5 |
258.0 |
277.2 |
CAE |
NAO |
CAI |
HAI1 |
18.0 |
37.1 |
CAE |
NAO |
CAI |
HAI2 |
138.4 |
157.1 |
OAC |
CAE |
NAO |
HAE |
180.0 |
180.1 |
CAI |
NAO |
CAH |
HAH1 |
328.1 |
150.0 |
CAI |
NAO |
CAH |
HAH2 |
207.7 |
30.0 |
CAH |
NAO |
CAI |
CAE |
180.1 |
180.0 |
CAI |
NAO |
CAE |
OAC |
0.2 |
354.6 |
CAI |
NAO |
CAE |
HAE |
180.2 |
174.5 |
C5 |
CAI |
NAO |
HAI1 |
240.0 |
240.0 |
C5 |
CAI |
NAO |
HAI2 |
119.6 |
120.1 |
NAO |
CAI |
C5 |
C6 |
257.4 |
8.8 |
NAO |
CAI |
C5 |
C4 |
77.1 |
188.6 |
HAI1 |
CAI |
NAO |
HAI2 |
239.6 |
240.1 |
OAC |
CAE |
NAO |
CAI |
0.2 |
354.6 |
NAO |
CAE |
OAC |
HAE |
180.0 |
179.9 |
HAE |
CAE |
NAO |
CAI |
180.2 |
174.5 |
NAO |
CAE |
HAE |
OAC |
180.0 |
180.1 |
NAO |
CAI |
C5 |
HAI1 |
120.0 |
120.0 |
NAO |
CAI |
C5 |
HAI2 |
240.4 |
240.0 |
HAI1 |
CAI |
C5 |
HAI2 |
120.4 |
120.0 |
C6 |
C5 |
CAI |
C4 |
180.3 |
180.2 |
CAI |
C5 |
C6 |
N1 |
179.6 |
180.0 |
CAI |
C5 |
C6 |
H6 |
359.6 |
360.0 |
CAI |
C5 |
C4 |
N3 |
180.1 |
179.7 |
CAI |
C5 |
C4 |
NAB |
0.4 |
360.0 |
NAO |
CAI |
HAI1 |
C5 |
239.2 |
240.0 |
NAO |
CAI |
HAI1 |
HAI2 |
119.6 |
119.9 |
C5 |
CAI |
HAI1 |
HAI2 |
240.4 |
239.9 |
HAI1 |
CAI |
C5 |
C6 |
137.4 |
248.9 |
HAI1 |
CAI |
C5 |
C4 |
317.1 |
68.7 |
NAO |
CAI |
HAI2 |
C5 |
120.5 |
120.1 |
NAO |
CAI |
HAI2 |
HAI1 |
240.3 |
240.1 |
C5 |
CAI |
HAI2 |
HAI1 |
119.8 |
120.0 |
HAI2 |
CAI |
C5 |
C6 |
17.0 |
128.9 |
HAI2 |
CAI |
C5 |
C4 |
196.7 |
308.7 |
C6 |
C5 |
CAI |
HAI1 |
137.4 |
248.9 |
C6 |
C5 |
CAI |
HAI2 |
17.0 |
128.9 |
CAI |
C5 |
C6 |
C4 |
179.7 |
179.8 |
C6 |
C5 |
C4 |
N3 |
359.7 |
359.5 |
C6 |
C5 |
C4 |
NAB |
180.1 |
179.8 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C5 |
C6 |
N1 |
C2 |
0.5 |
0.0 |
C4 |
C5 |
CAI |
HAI1 |
317.1 |
68.7 |
C4 |
C5 |
CAI |
HAI2 |
196.7 |
308.7 |
CAI |
C5 |
C4 |
C6 |
180.3 |
180.2 |
C4 |
C5 |
C6 |
N1 |
359.9 |
0.2 |
C4 |
C5 |
C6 |
H6 |
179.9 |
180.2 |
C2 |
N3 |
C4 |
C5 |
0.2 |
0.5 |
N3 |
C4 |
C5 |
NAB |
179.7 |
179.8 |
C5 |
C4 |
NAB |
HAB1 |
99.4 |
355.1 |
C5 |
C4 |
NAB |
HAB2 |
219.3 |
175.2 |
N1 |
C6 |
C5 |
C4 |
359.9 |
0.2 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
C6 |
N1 |
C2 |
CAA |
180.3 |
180.0 |
C6 |
N1 |
C2 |
N3 |
359.4 |
360.0 |
H6 |
C6 |
C5 |
C4 |
179.9 |
180.2 |
C5 |
C6 |
H6 |
N1 |
180.0 |
180.0 |
H6 |
C6 |
N1 |
C2 |
180.5 |
180.1 |
C2 |
N1 |
C6 |
H6 |
180.5 |
180.1 |
CAA |
C2 |
N1 |
N3 |
180.9 |
180.0 |
N1 |
C2 |
CAA |
HAA1 |
73.0 |
90.0 |
N1 |
C2 |
CAA |
HAA2 |
193.0 |
210.0 |
N1 |
C2 |
CAA |
HAA3 |
313.1 |
329.9 |
N1 |
C2 |
N3 |
C4 |
0.2 |
359.8 |
N1 |
C2 |
CAA |
N3 |
179.1 |
180.0 |
CAA |
C2 |
N3 |
C4 |
179.3 |
179.7 |
HAA1 |
CAA |
C2 |
HAA2 |
240.0 |
240.0 |
HAA1 |
CAA |
C2 |
HAA3 |
120.0 |
120.1 |
HAA2 |
CAA |
C2 |
HAA3 |
240.0 |
240.1 |
C5 |
C4 |
N3 |
C2 |
0.2 |
0.5 |
N1 |
C2 |
N3 |
CAA |
180.9 |
180.0 |
N3 |
C2 |
CAA |
HAA1 |
253.9 |
270.1 |
N3 |
C2 |
CAA |
HAA2 |
13.9 |
30.1 |
N3 |
C2 |
CAA |
HAA3 |
133.9 |
150.0 |
C2 |
N3 |
C4 |
NAB |
179.9 |
180.2 |
HAA1 |
CAA |
C2 |
N3 |
253.9 |
270.1 |
C2 |
CAA |
HAA1 |
HAA2 |
120.0 |
120.0 |
C2 |
CAA |
HAA1 |
HAA3 |
240.0 |
239.9 |
HAA2 |
CAA |
HAA1 |
HAA3 |
120.0 |
119.9 |
HAA2 |
CAA |
C2 |
N3 |
13.9 |
30.1 |
C2 |
CAA |
HAA2 |
HAA1 |
240.0 |
239.9 |
C2 |
CAA |
HAA2 |
HAA3 |
120.0 |
120.0 |
HAA1 |
CAA |
HAA2 |
HAA3 |
240.1 |
240.0 |
HAA3 |
CAA |
C2 |
N3 |
133.9 |
150.0 |
C2 |
CAA |
HAA3 |
HAA1 |
120.0 |
120.1 |
C2 |
CAA |
HAA3 |
HAA2 |
240.0 |
240.0 |
HAA1 |
CAA |
HAA3 |
HAA2 |
119.9 |
119.9 |
C5 |
C4 |
N3 |
NAB |
180.3 |
180.2 |
N3 |
C4 |
NAB |
HAB1 |
279.7 |
175.4 |
N3 |
C4 |
NAB |
HAB2 |
39.7 |
355.4 |
C5 |
C4 |
NAB |
N3 |
179.7 |
179.8 |
HAB1 |
NAB |
C4 |
HAB2 |
240.0 |
180.0 |
C4 |
NAB |
HAB1 |
HAB2 |
120.0 |
180.0 |
C4 |
NAB |
HAB2 |
HAB1 |
240.0 |
180.0 |