PDB Chemical Component PEZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PEZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C1	1.292	1.342
O1	HO1	0.950	0.966
C1	O2'	1.192	1.208
C1	C2	1.552	1.507
C2	O2	1.417	1.428
C2	C3	1.355	1.529
C2	H2	1.115	1.090
O2	P	1.592	1.609
P	O1P	1.456	1.478
P	O2P	1.501	1.609
P	O3P	1.561	1.611
O2P	H2P	0.951	0.967
O3P	H3P	0.951	0.966
C3	C4	1.461	1.530
C3	H31	1.115	1.090
C3	H32	1.115	1.090
C4	H41	1.114	1.090
C4	H42	1.116	1.089
C4	H43	1.116	1.089

Bond Angles for PEZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O1	HO1	121.9	120.0
O1	C1	O2'	121.9	120.0
O1	C1	C2	113.1	120.0
O2'	C1	C2	125.0	120.0
C1	C2	O2	106.8	109.5
C1	C2	C3	128.9	109.5
C1	C2	H2	114.8	109.4
O2	C2	C3	124.3	109.5
O2	C2	H2	137.5	109.4
C2	O2	P	132.3	106.9
C3	C2	H2	16.8	109.5
C2	C3	C4	143.6	109.5
C2	C3	H31	100.7	109.5
C2	C3	H32	100.7	109.4
O2	P	O1P	106.5	109.5
O2	P	O2P	106.7	109.5
O2	P	O3P	102.4	109.4
O1P	P	O2P	123.5	109.5
O1P	P	O3P	108.7	109.5
O2P	P	O3P	107.1	109.4
P	O2P	H2P	106.7	106.8
P	O3P	H3P	102.4	106.8
C4	C3	H31	100.7	109.5
C4	C3	H32	100.8	109.5
C3	C4	H41	143.6	109.5
C3	C4	H42	100.8	109.4
C3	C4	H43	100.8	109.4
H31	C3	H32	106.7	109.5
H41	C4	H42	100.7	109.5
H41	C4	H43	100.8	109.5
H42	C4	H43	106.6	109.5

Torsion Angles for PEZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2'	C1	O1	C2	179.6	180.0
O1	C1	C2	O2	180.1	180.0
O1	C1	C2	C3	2.1	59.9
O1	C1	C2	H2	351.2	299.9
HO1	O1	C1	O2'	180.0	360.0
HO1	O1	C1	C2	0.4	180.0
O2'	C1	O1	HO1	180.0	360.0
O1	C1	O2'	C2	180.4	180.0
O2'	C1	C2	O2	0.5	0.1
O2'	C1	C2	C3	182.5	240.0
O2'	C1	C2	H2	171.6	120.0
C2	C1	O1	HO1	0.4	180.0
O1	C1	C2	O2'	179.6	180.0
O2	C2	C1	C3	177.9	120.1
O2	C2	C1	H2	188.9	240.1
C1	C2	O2	P	182.4	120.0
C3	C2	C1	H2	11.0	120.0
C1	C2	C3	C4	179.7	180.0
C1	C2	C3	H31	305.0	300.1
C1	C2	C3	H32	54.5	60.1
C1	C2	O2	C3	181.9	239.9
C1	C2	O2	H2	168.0	119.9
C3	C2	O2	H2	346.1	240.0
O2	C2	C3	C4	2.1	60.0
O2	C2	C3	H31	127.4	180.0
O2	C2	C3	H32	236.9	300.0
C2	O2	P	O1P	65.6	59.9
C2	O2	P	O2P	291.9	180.0
C2	O2	P	O3P	179.6	299.9
C1	C2	C3	O2	177.6	120.1
C1	C2	C3	H2	323.4	240.0
O2	C2	C3	H2	145.8	120.0
C3	C2	O2	P	0.5	240.1
C4	C3	C2	H31	234.8	240.0
C4	C3	C2	H32	125.2	120.0
C2	C3	C4	H41	180.1	180.0
C2	C3	C4	H42	305.3	300.1
C2	C3	C4	H43	54.7	60.0
H31	C3	C2	H32	250.5	240.0
C1	C2	H2	O2	192.6	240.0
C1	C2	H2	C3	149.2	120.0
O2	C2	H2	C3	316.6	240.0
H2	C2	O2	P	14.4	0.1
H2	C2	C3	C4	216.4	300.0
H2	C2	C3	H31	341.6	60.0
H2	C2	C3	H32	91.1	180.0
P	O2	C2	C3	0.5	240.1
P	O2	C2	H2	14.4	0.1
O1P	P	O2	O2P	133.7	239.9
O1P	P	O2	O3P	246.0	120.0
O2P	P	O2	O3P	112.3	240.1
O2	P	O2P	H2P	180.0	179.9
O2	P	O3P	H3P	180.0	300.0
O2	P	O1P	O2P	236.2	120.1
O2	P	O1P	O3P	109.6	240.1
O2P	P	O1P	O3P	233.4	120.0
O1P	P	O2P	H2P	56.3	300.0
O1P	P	O3P	H3P	292.4	180.0
O2	P	O2P	O1P	123.7	239.9
O2	P	O2P	O3P	251.0	119.9
O1P	P	O2P	O3P	127.3	240.0
O2P	P	O3P	H3P	68.0	60.0
O2	P	O3P	O1P	247.6	120.0
O2	P	O3P	O2P	112.0	240.0
O1P	P	O3P	O2P	224.5	120.0
O3P	P	O2P	H2P	289.1	60.0
H2P	O2P	P	O3P	289.1	60.0
C4	C3	C2	H2	216.4	300.0
C2	C3	C4	H31	125.2	120.1
C2	C3	C4	H32	234.8	240.1
H31	C3	C4	H32	109.5	120.0
H41	C4	C3	H42	234.8	240.0
H41	C4	C3	H43	125.4	120.0
H42	C4	C3	H43	250.6	240.0
H31	C3	C2	H2	341.6	60.0
C2	C3	H31	C4	209.6	239.9
C2	C3	H31	H32	104.8	120.0
C4	C3	H31	H32	255.2	240.0
H31	C3	C4	H41	54.8	59.9
H31	C3	C4	H42	180.1	180.0
H31	C3	C4	H43	289.5	299.9
H32	C3	C2	H2	91.1	180.0
C2	C3	H32	C4	150.4	120.0
C2	C3	H32	H31	255.2	240.0
C4	C3	H32	H31	104.8	120.0
H32	C3	C4	H41	305.3	300.0
H32	C3	C4	H42	70.5	60.0
H32	C3	C4	H43	179.9	179.9
H41	C4	C3	H31	54.8	59.9
H41	C4	C3	H32	305.3	300.0
C3	C4	H41	H42	125.2	120.0
C3	C4	H41	H43	234.6	240.0
H42	C4	H41	H43	109.4	120.0
H42	C4	C3	H31	180.1	180.0
H42	C4	C3	H32	70.5	60.0
C3	C4	H42	H41	209.5	240.0
C3	C4	H42	H43	104.8	119.9
H41	C4	H42	H43	255.2	240.0
H43	C4	C3	H31	289.5	299.9
H43	C4	C3	H32	179.9	179.9
C3	C4	H43	H41	150.5	120.0
C3	C4	H43	H42	255.2	240.1
H41	C4	H43	H42	104.7	120.0