PDB Chemical Component PEM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PEM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.414	1.379
C1	C6	1.411	1.379
C1	C7	1.524	1.486
C2	C3	1.419	1.394
C2	H21	1.115	1.087
C3	C4	1.420	1.395
C3	H31	1.115	1.087
C4	C5	1.397	1.395
C4	CL	1.748	1.721
C5	C6	1.408	1.395
C5	H51	1.115	1.087
C6	HC6	1.103	1.087
C7	O1	1.231	1.229
C7	N1	1.405	1.390
N1	C8	1.474	1.438
N1	HN1	1.020	1.018
C8	C9	1.562	1.533
C8	HC81	1.116	1.095
C8	HC82	1.115	1.096
C9	C13	1.517	1.491
C9	HC91	1.115	1.103
C9	HC92	1.115	1.103
C10	C11	1.380	1.392
C10	C15	1.394	1.392
C10	O2	1.664	1.368
C11	C12	1.426	1.395
C11	H11	1.115	1.086
C12	C13	1.425	1.395
C12	H12	1.115	1.087
C13	C14	1.428	1.395
C14	C15	1.430	1.395
C14	H14	1.115	1.087
C15	H15	1.115	1.087
O2	C16	1.443	1.427
C16	C17	1.567	1.526
C16	C18	1.584	1.526
C16	C19	1.561	1.524
C17	H171	1.115	1.095
C17	H172	1.115	1.096
C17	H173	1.115	1.096
C18	H181	1.115	1.096
C18	H182	1.115	1.095
C18	H183	1.115	1.096
C19	O3	1.362	1.357
C19	O4	1.225	1.225
O3	HO3	0.950	0.980

Bond Angles for PEM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	122.3	122.3
C2	C1	C7	119.5	118.9
C1	C2	C3	118.0	118.9
C1	C2	H21	109.2	121.7
C6	C1	C7	118.2	118.9
C1	C6	C5	119.1	118.9
C1	C6	HC6	120.6	121.8
C1	C7	O1	117.6	119.3
C1	C7	N1	116.3	116.1
C3	C2	H21	109.1	119.4
C2	C3	C4	119.5	120.0
C2	C3	H31	108.6	119.2
C4	C3	H31	108.6	120.8
C3	C4	C5	121.6	120.0
C3	C4	CL	117.5	120.0
C5	C4	CL	120.9	120.0
C4	C5	C6	119.5	120.0
C4	C5	H51	108.6	120.9
C6	C5	H51	108.6	119.2
C5	C6	HC6	120.4	119.3
O1	C7	N1	125.7	124.6
C7	N1	C8	116.4	122.7
C7	N1	HN1	119.6	119.8
C8	N1	HN1	124.0	117.4
N1	C8	C9	97.1	112.4
N1	C8	HC81	117.1	106.8
N1	C8	HC82	117.0	107.5
C9	C8	HC81	117.0	110.5
C9	C8	HC82	117.0	111.3
C8	C9	C13	101.2	113.6
C8	C9	HC91	115.4	108.5
C8	C9	HC92	115.4	109.3
HC81	C8	HC82	93.3	108.2
C13	C9	HC91	115.4	109.3
C13	C9	HC92	115.4	110.6
C9	C13	C12	135.1	120.0
C9	C13	C14	105.5	120.0
HC91	C9	HC92	95.1	105.1
C11	C10	C15	123.7	120.4
C11	C10	O2	120.9	119.8
C10	C11	C12	122.3	119.8
C10	C11	H11	107.6	120.6
C15	C10	O2	114.7	119.8
C10	C15	C14	114.5	119.8
C10	C15	H15	110.4	120.6
C10	O2	C16	118.3	116.6
C12	C11	H11	107.6	119.7
C11	C12	C13	116.4	120.0
C11	C12	H12	109.7	119.5
C13	C12	H12	109.7	120.5
C12	C13	C14	119.3	120.0
C13	C14	C15	123.3	120.0
C13	C14	H14	107.3	120.5
C15	C14	H14	107.3	119.5
C14	C15	H15	110.4	119.6
O2	C16	C17	121.3	108.0
O2	C16	C18	107.5	108.0
O2	C16	C19	103.3	105.6
C17	C16	C18	104.2	112.4
C17	C16	C19	113.7	111.2
C16	C17	H171	108.0	112.2
C16	C17	H172	121.3	111.0
C16	C17	H173	108.0	110.7
C18	C16	C19	105.9	111.2
C16	C18	H181	112.9	110.7
C16	C18	H182	107.5	112.2
C16	C18	H183	112.9	110.9
C16	C19	O3	118.5	113.4
C16	C19	O4	112.7	124.4
H171	C17	H172	108.0	108.2
H171	C17	H173	101.9	107.9
H172	C17	H173	108.0	106.7
H181	C18	H182	113.0	107.9
H181	C18	H183	97.5	106.7
H182	C18	H183	113.0	108.2
O3	C19	O4	126.7	122.3
C19	O3	HO3	118.5	115.9

Torsion Angles for PEM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C7	180.4	180.0
C2	C1	C6	C5	2.5	0.0
C2	C1	C6	HC6	182.5	180.0
C2	C1	C7	O1	164.5	334.1
C2	C1	C7	N1	337.3	153.0
C3	C2	C1	H21	234.7	180.0
C1	C2	C3	C4	359.2	0.0
C1	C2	C3	H31	124.5	179.9
C2	C1	C6	C7	179.6	180.0
C6	C1	C2	C3	359.0	360.0
C6	C1	C2	H21	124.3	180.0
C6	C1	C7	O1	344.2	154.1
C6	C1	C7	N1	157.0	333.0
C4	C5	C6	C1	357.9	360.0
C1	C6	C5	H51	232.6	179.9
C5	C6	C1	HC6	180.0	180.1
C2	C1	C7	C6	180.4	180.0
C7	C1	C2	C3	178.6	180.0
C7	C1	C2	H21	303.9	0.0
C7	C1	C6	C5	182.8	180.0
C7	C1	C6	HC6	2.8	359.9
O1	C7	C1	N1	187.2	181.1
C1	C7	N1	C8	178.5	181.1
C1	C7	N1	HN1	358.5	357.0
C3	C2	C1	C6	359.0	360.0
C3	C2	C1	C7	178.6	180.0
C1	C2	C3	H21	125.3	180.0
C4	C3	C2	H31	234.7	180.1
C2	C3	C4	C5	1.2	-0.0
C2	C3	C4	CL	179.6	180.0
H21	C2	C1	C6	124.3	180.0
H21	C2	C1	C7	303.9	0.0
C1	C2	H21	C3	229.7	180.0
H21	C2	C3	C4	233.9	180.0
H21	C2	C3	H31	359.2	359.9
C4	C3	C2	H21	233.9	180.0
C2	C3	C4	H31	125.3	179.9
C5	C4	C3	CL	181.6	180.0
C3	C4	C5	C6	0.3	0.0
C3	C4	C5	H51	125.6	180.1
H31	C3	C2	H21	359.2	359.9
C2	C3	H31	C4	228.6	180.1
H31	C3	C4	C5	235.9	180.1
H31	C3	C4	CL	54.3	0.1
C1	C6	C5	C4	357.9	360.0
C5	C4	C3	H31	235.9	180.1
C3	C4	C5	CL	178.3	180.0
C6	C5	C4	H51	234.7	179.9
C4	C5	C6	HC6	177.9	180.0
CL	C4	C3	H31	54.3	0.1
C3	C4	CL	C5	181.6	180.0
CL	C4	C5	C6	182.0	180.0
CL	C4	C5	H51	307.2	0.0
C5	C6	C1	C7	182.8	180.0
C1	C6	C5	HC6	180.0	179.9
C6	C5	C4	CL	182.0	180.0
C4	C5	C6	H51	125.3	180.1
H51	C5	C4	CL	307.2	0.0
C4	C5	H51	C6	228.6	179.9
H51	C5	C6	HC6	52.6	360.0
HC6	C6	C1	C7	2.8	359.9
C1	C6	HC6	C5	180.0	180.1
HC6	C6	C5	H51	52.6	360.0
C1	C7	O1	N1	172.0	178.8
O1	C7	N1	C8	350.6	359.9
O1	C7	N1	HN1	170.6	175.8
C1	C7	N1	O1	187.9	181.2
C8	N1	C7	HN1	180.0	184.1
C7	N1	C8	C9	226.1	270.0
C7	N1	C8	HC81	100.9	148.7
C7	N1	C8	HC82	351.4	32.8
C7	N1	C8	HN1	180.0	175.9
C9	C8	N1	HC81	125.2	121.3
C9	C8	N1	HC82	234.7	237.2
N1	C8	C9	C13	171.3	300.9
N1	C8	C9	HC91	46.0	62.7
N1	C8	C9	HC92	296.5	176.8
HC81	C8	N1	HC82	109.5	115.9
C7	N1	HN1	C8	180.0	183.9
HN1	N1	C8	C9	46.1	94.1
HN1	N1	C8	HC81	280.9	332.8
HN1	N1	C8	HC82	171.4	216.9
C9	C8	N1	HN1	46.1	94.1
N1	C8	C9	HC81	234.7	240.8
N1	C8	C9	HC82	125.3	120.7
HC81	C8	C9	HC82	250.5	239.8
C13	C9	C8	HC91	125.3	238.2
C13	C9	C8	HC92	234.7	124.0
C8	C9	C13	C12	273.1	270.0
C8	C9	C13	C14	91.6	90.0
HC91	C9	C8	HC92	109.5	245.9
HC81	C8	N1	HN1	280.9	332.8
N1	C8	HC81	C9	114.5	122.5
N1	C8	HC81	HC82	237.3	244.5
C9	C8	HC81	HC82	122.7	122.0
HC81	C8	C9	C13	296.5	60.0
HC81	C8	C9	HC91	171.3	181.8
HC81	C8	C9	HC92	61.8	296.0
HC82	C8	N1	HN1	171.4	216.9
N1	C8	HC82	C9	245.5	236.6
N1	C8	HC82	HC81	122.8	115.0
C9	C8	HC82	HC81	237.3	238.4
HC82	C8	C9	C13	46.0	180.2
HC82	C8	C9	HC91	280.7	302.0
HC82	C8	C9	HC92	171.3	56.2
C13	C9	C8	HC81	296.5	60.0
C13	C9	C8	HC82	46.0	180.2
C8	C9	C13	HC91	234.7	121.4
C8	C9	C13	HC92	125.3	236.7
HC91	C9	C13	HC92	250.5	115.3
C11	C12	C13	C9	181.8	180.0
C9	C13	C12	H12	307.1	0.0
C12	C13	C9	C14	181.5	180.0
C9	C13	C14	C15	173.8	180.0
C9	C13	C14	H14	48.5	360.0
HC91	C9	C8	HC81	171.3	181.8
HC91	C9	C8	HC82	280.7	302.0
C8	C9	HC91	C13	117.6	235.6
C8	C9	HC91	HC92	238.8	116.9
C13	C9	HC91	HC92	121.2	241.2
HC91	C9	C13	C12	38.3	148.6
HC91	C9	C13	C14	216.9	328.6
HC92	C9	C8	HC81	61.8	296.0
HC92	C9	C8	HC82	171.3	56.2
C8	C9	HC92	C13	242.5	125.8
C8	C9	HC92	HC91	121.2	243.7
C13	C9	HC92	HC91	238.8	117.9
HC92	C9	C13	C12	147.8	33.3
HC92	C9	C13	C14	326.3	213.3
C15	C10	C11	O2	190.5	180.0
C11	C10	C15	C14	355.4	0.0
C11	C10	C15	H15	230.1	180.0
C11	C10	O2	C16	26.4	150.0
C12	C11	C10	H11	125.2	180.0
C10	C11	C12	C13	359.5	0.0
C10	C11	C12	H12	234.3	180.0
C11	C10	C15	O2	170.1	180.0
C15	C10	C11	C12	1.2	360.0
C15	C10	C11	H11	236.0	180.0
C15	C10	O2	C16	196.8	329.9
C13	C14	C15	C10	7.7	360.0
C10	C15	C14	H14	133.0	180.0
C14	C15	C10	H15	125.3	180.1
C11	C10	O2	C15	189.6	180.0
O2	C10	C11	C12	170.7	179.9
O2	C10	C11	H11	45.5	359.9
O2	C10	C15	C14	185.3	180.1
O2	C10	C15	H15	60.0	0.0
C10	O2	C16	C17	45.3	300.9
C10	O2	C16	C18	164.7	179.1
C10	O2	C16	C19	276.4	60.0
C9	C13	C12	C11	181.8	180.0
C12	C11	C10	C15	1.2	360.0
C12	C11	C10	O2	170.7	179.9
C10	C11	C12	H11	234.8	180.0
C13	C12	C11	H12	125.2	180.0
C11	C12	C13	C14	3.4	360.0
H11	C11	C10	C15	236.0	180.0
H11	C11	C10	O2	45.5	359.9
C10	C11	H11	C12	133.6	180.0
H11	C11	C12	C13	124.8	180.0
H11	C11	C12	H12	359.5	360.0
C12	C13	C9	HC91	38.3	148.6
C12	C13	C9	HC92	147.8	33.3
C9	C13	C12	C14	178.4	180.0
C13	C12	C11	H11	124.8	180.0
C11	C12	C13	H12	234.7	180.0
C12	C13	C14	C15	352.6	0.0
C12	C13	C14	H14	227.3	180.0
H12	C12	C11	H11	359.5	360.0
C11	C12	H12	C13	129.0	180.0
H12	C12	C13	C14	128.7	180.0
C14	C13	C9	HC91	216.9	328.6
C14	C13	C9	HC92	326.3	213.3
C9	C13	C14	C12	181.2	180.0
C10	C15	C14	C13	7.7	360.0
C14	C13	C12	H12	128.7	180.0
C15	C14	C13	H14	125.3	180.0
C13	C14	C15	H15	133.0	180.0
C14	C15	C10	O2	185.3	180.1
C10	C15	C14	H15	234.7	179.9
C13	C14	C15	H14	234.7	180.0
C13	C14	H14	C15	134.4	180.0
H14	C14	C15	H15	258.3	0.1
H15	C15	C10	O2	60.0	0.0
C10	C15	H15	C14	127.6	180.1
H15	C15	C14	H14	258.3	0.1
C17	C16	O2	C18	240.6	121.8
C17	C16	O2	C19	128.9	240.9
O2	C16	C17	H171	54.8	182.0
O2	C16	C17	H172	180.0	303.2
O2	C16	C17	H173	305.2	61.5
C18	C16	O2	C19	248.3	119.1
O2	C16	C18	H181	54.7	298.5
O2	C16	C18	H182	180.0	177.9
O2	C16	C18	H183	305.3	56.7
O2	C16	C19	O3	353.6	213.1
O2	C16	C19	O4	158.2	33.0
O2	C16	C17	C18	121.0	240.9
O2	C16	C17	C19	235.9	115.5
C18	C16	C17	C19	114.9	234.6
C17	C16	C18	H181	184.6	179.4
C17	C16	C18	H182	309.8	58.8
C17	C16	C18	H183	75.1	297.7
C17	C16	C19	O3	220.3	330.1
C17	C16	C19	O4	24.9	150.0
H171	C17	C16	H172	234.8	238.8
H171	C17	C16	H173	109.5	120.5
H172	C17	C16	H173	234.8	241.7
O2	C16	C18	C17	230.2	119.1
O2	C16	C18	C19	109.9	244.5
C17	C16	C18	C19	239.7	125.4
C18	C16	C17	H171	293.7	301.1
C18	C16	C17	H172	59.0	62.3
C18	C16	C17	H173	184.2	180.6
C18	C16	C19	O3	106.5	96.1
C18	C16	C19	O4	271.1	276.1
H181	C18	C16	H182	234.7	120.6
H181	C18	C16	H183	109.5	241.7
H182	C18	C16	H183	234.7	121.2
O2	C16	C19	C17	133.3	243.0
O2	C16	C19	C18	247.2	116.9
C17	C16	C19	C18	113.8	233.9
C19	C16	C17	H171	178.9	66.5
C19	C16	C17	H172	304.1	187.7
C19	C16	C17	H173	69.4	306.0
C19	C16	C18	H181	304.8	53.9
C19	C16	C18	H182	70.1	293.4
C19	C16	C18	H183	195.4	172.2
O3	C19	C16	O4	195.4	180.1
C16	C19	O3	HO3	180.0	180.0
H171	C17	C16	C18	293.7	301.1
H171	C17	C16	C19	178.9	66.5
C16	C17	H171	H172	132.8	122.8
C16	C17	H171	H173	246.4	237.9
H172	C17	H171	H173	113.6	115.1
H172	C17	C16	C18	59.0	62.3
H172	C17	C16	C19	304.1	187.7
C16	C17	H172	H171	234.7	236.5
C16	C17	H172	H173	125.3	120.7
H171	C17	H172	H173	250.5	244.2
H173	C17	C16	C18	184.2	180.6
H173	C17	C16	C19	69.4	306.0
C16	C17	H173	H171	113.6	123.0
C16	C17	H173	H172	227.2	239.2
H171	C17	H173	H172	113.6	116.1
H181	C18	C16	C19	304.8	53.9
C16	C18	H181	H182	122.3	236.9
C16	C18	H181	H183	241.1	120.8
H182	C18	H181	H183	118.9	243.9
H182	C18	C16	C19	70.1	293.4
C16	C18	H182	H181	234.7	122.2
C16	C18	H182	H183	125.2	237.3
H181	C18	H182	H183	250.5	115.1
H183	C18	C16	C19	195.4	172.2
C16	C18	H183	H181	118.9	239.3
C16	C18	H183	H182	237.8	123.4
H181	C18	H183	H182	118.9	244.1
C16	C19	O3	O4	162.2	179.9
C16	C19	O4	O3	196.9	180.1
O4	C19	O3	HO3	17.8	0.1
HO3	O3	C19	O4	17.8	0.1