PDB Chemical Component PEL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PEL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1' |
C2' |
1.427 |
1.381 |
| C1' |
C6' |
1.414 |
1.382 |
| C1' |
CA |
1.506 |
1.506 |
| C2' |
C3' |
1.418 |
1.382 |
| C2' |
H2 |
1.102 |
1.080 |
| C3' |
C4' |
1.423 |
1.382 |
| C3' |
H3 |
1.103 |
1.080 |
| C4' |
C5' |
1.410 |
1.381 |
| C4' |
H4 |
1.103 |
1.081 |
| C5' |
C6' |
1.418 |
1.382 |
| C5' |
H5 |
1.103 |
1.080 |
| C6' |
H6 |
1.103 |
1.080 |
| CA |
C |
1.534 |
1.530 |
| CA |
HA1 |
1.115 |
1.089 |
| CA |
HA2 |
1.115 |
1.090 |
| C |
OXT |
1.435 |
1.429 |
| C |
H11 |
1.115 |
1.089 |
| C |
H12 |
1.115 |
1.090 |
| OXT |
HXT |
0.949 |
0.967 |
Bond Angles for PEL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2' |
C1' |
C6' |
119.5 |
120.0 |
| C2' |
C1' |
CA |
120.1 |
120.0 |
| C1' |
C2' |
C3' |
121.4 |
120.0 |
| C1' |
C2' |
H2 |
119.6 |
120.0 |
| C6' |
C1' |
CA |
120.0 |
120.0 |
| C1' |
C6' |
C5' |
119.4 |
120.0 |
| C1' |
C6' |
H6 |
120.2 |
120.0 |
| C1' |
CA |
C |
110.5 |
109.5 |
| C1' |
CA |
HA1 |
111.8 |
109.5 |
| C1' |
CA |
HA2 |
111.8 |
109.5 |
| C3' |
C2' |
H2 |
119.0 |
120.0 |
| C2' |
C3' |
C4' |
118.0 |
120.0 |
| C2' |
C3' |
H3 |
120.8 |
120.0 |
| C4' |
C3' |
H3 |
121.2 |
120.0 |
| C3' |
C4' |
C5' |
120.8 |
120.0 |
| C3' |
C4' |
H4 |
120.1 |
120.0 |
| C5' |
C4' |
H4 |
119.1 |
120.0 |
| C4' |
C5' |
C6' |
120.5 |
120.0 |
| C4' |
C5' |
H5 |
119.4 |
120.0 |
| C6' |
C5' |
H5 |
120.1 |
120.0 |
| C5' |
C6' |
H6 |
120.4 |
120.0 |
| C |
CA |
HA1 |
111.8 |
109.5 |
| C |
CA |
HA2 |
111.9 |
109.4 |
| CA |
C |
OXT |
107.7 |
109.5 |
| CA |
C |
H11 |
112.8 |
109.5 |
| CA |
C |
H12 |
112.8 |
109.4 |
| HA1 |
CA |
HA2 |
98.5 |
109.4 |
| OXT |
C |
H11 |
112.9 |
109.5 |
| OXT |
C |
H12 |
112.9 |
109.5 |
| C |
OXT |
HXT |
107.7 |
106.7 |
| H11 |
C |
H12 |
97.6 |
109.4 |
Torsion Angles for PEL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6' |
C1' |
C2' |
CA |
172.8 |
180.3 |
| C2' |
C1' |
C6' |
C5' |
1.0 |
359.6 |
| C2' |
C1' |
C6' |
H6 |
181.0 |
180.0 |
| C2' |
C1' |
CA |
C |
126.4 |
90.0 |
| C2' |
C1' |
CA |
HA1 |
251.7 |
330.0 |
| C2' |
C1' |
CA |
HA2 |
1.1 |
210.0 |
| C3' |
C2' |
C1' |
H2 |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
1.0 |
360.0 |
| C1' |
C2' |
C3' |
H3 |
181.0 |
180.0 |
| C2' |
C1' |
C6' |
CA |
187.2 |
179.7 |
| C6' |
C1' |
C2' |
C3' |
1.3 |
0.2 |
| C6' |
C1' |
C2' |
H2 |
181.4 |
180.2 |
| C6' |
C1' |
CA |
C |
313.6 |
269.8 |
| C6' |
C1' |
CA |
HA1 |
78.9 |
149.7 |
| C6' |
C1' |
CA |
HA2 |
188.3 |
29.7 |
| C4' |
C5' |
C6' |
C1' |
354.3 |
0.3 |
| C1' |
C6' |
C5' |
H5 |
174.3 |
180.3 |
| C5' |
C6' |
C1' |
H6 |
180.0 |
179.7 |
| C2' |
C1' |
CA |
C6' |
172.8 |
180.3 |
| CA |
C1' |
C2' |
C3' |
188.5 |
180.0 |
| CA |
C1' |
C2' |
H2 |
8.6 |
360.0 |
| CA |
C1' |
C6' |
C5' |
173.8 |
179.9 |
| CA |
C1' |
C6' |
H6 |
353.8 |
0.2 |
| C |
CA |
C1' |
HA1 |
234.7 |
120.1 |
| C |
CA |
C1' |
HA2 |
125.3 |
240.0 |
| C1' |
CA |
C |
OXT |
237.8 |
180.0 |
| C1' |
CA |
C |
H11 |
3.0 |
59.9 |
| C1' |
CA |
C |
H12 |
112.5 |
300.0 |
| HA1 |
CA |
C1' |
HA2 |
250.6 |
120.0 |
| C3' |
C2' |
C1' |
C6' |
1.3 |
0.2 |
| C3' |
C2' |
C1' |
CA |
188.5 |
180.0 |
| C1' |
C2' |
C3' |
H2 |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H3 |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
C5' |
354.3 |
360.0 |
| C2' |
C3' |
C4' |
H4 |
174.4 |
179.9 |
| H2 |
C2' |
C1' |
C6' |
181.4 |
180.2 |
| H2 |
C2' |
C1' |
CA |
8.6 |
360.0 |
| C1' |
C2' |
H2 |
C3' |
180.0 |
180.0 |
| H2 |
C2' |
C3' |
C4' |
180.9 |
180.0 |
| H2 |
C2' |
C3' |
H3 |
1.0 |
360.0 |
| C4' |
C3' |
C2' |
H2 |
180.9 |
180.0 |
| C2' |
C3' |
C4' |
H3 |
180.0 |
180.0 |
| C5' |
C4' |
C3' |
H4 |
180.0 |
180.1 |
| C3' |
C4' |
C5' |
C6' |
8.1 |
359.9 |
| C3' |
C4' |
C5' |
H5 |
188.1 |
179.9 |
| H3 |
C3' |
C2' |
H2 |
1.0 |
360.0 |
| C2' |
C3' |
H3 |
C4' |
180.0 |
180.0 |
| H3 |
C3' |
C4' |
C5' |
174.3 |
180.0 |
| H3 |
C3' |
C4' |
H4 |
354.4 |
359.9 |
| C1' |
C6' |
C5' |
C4' |
354.3 |
0.3 |
| C5' |
C4' |
C3' |
H3 |
174.3 |
180.0 |
| C3' |
C4' |
C5' |
H4 |
180.0 |
179.9 |
| C6' |
C5' |
C4' |
H5 |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
H6 |
174.4 |
180.0 |
| H4 |
C4' |
C3' |
H3 |
354.4 |
359.9 |
| C3' |
C4' |
H4 |
C5' |
180.0 |
180.1 |
| H4 |
C4' |
C5' |
C6' |
188.1 |
179.9 |
| H4 |
C4' |
C5' |
H5 |
8.1 |
360.0 |
| C5' |
C6' |
C1' |
CA |
173.8 |
179.9 |
| C1' |
C6' |
C5' |
H6 |
180.0 |
180.3 |
| C6' |
C5' |
C4' |
H4 |
188.1 |
179.9 |
| C4' |
C5' |
C6' |
H5 |
180.0 |
180.0 |
| H5 |
C5' |
C4' |
H4 |
8.1 |
360.0 |
| C4' |
C5' |
H5 |
C6' |
180.0 |
180.0 |
| H5 |
C5' |
C6' |
H6 |
354.3 |
359.9 |
| H6 |
C6' |
C1' |
CA |
353.8 |
0.2 |
| C1' |
C6' |
H6 |
C5' |
180.0 |
179.7 |
| H6 |
C6' |
C5' |
H5 |
354.3 |
359.9 |
| C1' |
CA |
C |
HA1 |
125.3 |
239.9 |
| C1' |
CA |
C |
HA2 |
234.7 |
120.0 |
| HA1 |
CA |
C |
HA2 |
109.4 |
240.1 |
| OXT |
C |
CA |
H11 |
234.7 |
120.1 |
| OXT |
C |
CA |
H12 |
125.3 |
240.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| H11 |
C |
CA |
H12 |
250.5 |
119.9 |
| C1' |
CA |
HA1 |
C |
235.5 |
120.1 |
| C1' |
CA |
HA1 |
HA2 |
117.7 |
240.0 |
| C |
CA |
HA1 |
HA2 |
242.3 |
119.9 |
| HA1 |
CA |
C |
OXT |
112.5 |
300.1 |
| HA1 |
CA |
C |
H11 |
237.8 |
180.0 |
| HA1 |
CA |
C |
H12 |
347.2 |
60.1 |
| C1' |
CA |
HA2 |
C |
124.6 |
240.0 |
| C1' |
CA |
HA2 |
HA1 |
242.3 |
120.0 |
| C |
CA |
HA2 |
HA1 |
117.7 |
240.0 |
| HA2 |
CA |
C |
OXT |
3.1 |
60.0 |
| HA2 |
CA |
C |
H11 |
128.3 |
299.9 |
| HA2 |
CA |
C |
H12 |
237.8 |
180.0 |
| OXT |
C |
CA |
HA1 |
112.5 |
300.1 |
| OXT |
C |
CA |
HA2 |
3.1 |
60.0 |
| CA |
C |
OXT |
H11 |
125.2 |
239.9 |
| CA |
C |
OXT |
H12 |
234.8 |
119.9 |
| H11 |
C |
OXT |
H12 |
109.5 |
240.0 |
| H11 |
C |
CA |
HA1 |
237.8 |
180.0 |
| H11 |
C |
CA |
HA2 |
128.3 |
299.9 |
| CA |
C |
H11 |
OXT |
237.6 |
120.1 |
| CA |
C |
H11 |
H12 |
118.8 |
240.1 |
| OXT |
C |
H11 |
H12 |
241.2 |
120.0 |
| H11 |
C |
OXT |
HXT |
54.8 |
300.1 |
| H12 |
C |
CA |
HA1 |
347.2 |
60.1 |
| H12 |
C |
CA |
HA2 |
237.8 |
180.0 |
| CA |
C |
H12 |
OXT |
122.4 |
240.0 |
| CA |
C |
H12 |
H11 |
241.2 |
120.0 |
| OXT |
C |
H12 |
H11 |
118.8 |
240.0 |
| H12 |
C |
OXT |
HXT |
305.2 |
60.0 |
| HXT |
OXT |
C |
H11 |
54.8 |
300.1 |
| HXT |
OXT |
C |
H12 |
305.2 |
60.0 |