PDB Chemical Component PE7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PE7

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.831 1.814
S1 HS 1.300 1.344
C2 C3 1.497 1.529
C2 H21 1.100 1.089
C2 H22 1.100 1.090
C3 O4 1.429 1.429
C3 H31 1.100 1.090
C3 H32 1.100 1.089
O4 C5 1.433 1.429
C5 C6 1.504 1.530
C5 H51 1.100 1.090
C5 H52 1.100 1.089
C6 O7 1.426 1.429
C6 H61 1.100 1.090
C6 H62 1.100 1.090
O7 C8 1.434 1.428
C8 C9 1.500 1.530
C8 H81 1.100 1.090
C8 H82 1.100 1.090
C9 O10 1.423 1.429
C9 H91 1.100 1.090
C9 H92 1.100 1.091
O10 C11 1.428 1.428
C11 C12 1.500 1.529
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C12 O13 1.423 1.429
C12 H121 1.100 1.090
C12 H122 1.100 1.090
O13 C14 1.427 1.429
C14 C15 1.495 1.529
C14 H141 1.100 1.090
C14 H142 1.101 1.090
C15 O16 1.430 1.428
C15 H151 1.100 1.089
C15 H152 1.100 1.090
O16 C17 1.433 1.429
C17 C18 1.508 1.529
C17 H171 1.100 1.089
C17 H172 1.100 1.090
C18 O19 1.425 1.429
C18 H181 1.100 1.090
C18 H182 1.100 1.091
O19 C20 1.428 1.428
C20 C21 1.497 1.530
C20 H201 1.100 1.091
C20 H202 1.099 1.090
C21 O22 1.425 1.428
C21 H211 1.099 1.090
C21 H212 1.100 1.089
O22 HO2 0.950 0.967

Bond Angles for PE7

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 HS 109.5 100.0
S1 C2 C3 117.3 109.5
S1 C2 H21 105.1 109.4
S1 C2 H22 106.9 109.4
C3 C2 H21 105.1 109.5
C3 C2 H22 107.0 109.5
C2 C3 O4 110.8 109.5
C2 C3 H31 108.7 109.5
C2 C3 H32 109.0 109.5
H21 C2 H22 115.9 109.5
O4 C3 H31 108.7 109.5
O4 C3 H32 109.0 109.5
C3 O4 C5 112.7 106.8
H31 C3 H32 110.5 109.4
O4 C5 C6 111.7 109.4
O4 C5 H51 108.2 109.5
O4 C5 H52 108.7 109.5
C6 C5 H51 108.3 109.5
C6 C5 H52 108.8 109.5
C5 C6 O7 110.3 109.5
C5 C6 H61 109.0 109.5
C5 C6 H62 109.2 109.5
H51 C5 H52 111.2 109.5
O7 C6 H61 109.0 109.5
O7 C6 H62 109.2 109.5
C6 O7 C8 113.8 106.8
H61 C6 H62 110.1 109.4
O7 C8 C9 109.7 109.4
O7 C8 H81 109.3 109.5
O7 C8 H82 109.4 109.6
C9 C8 H81 109.3 109.5
C9 C8 H82 109.4 109.5
C8 C9 O10 110.3 109.5
C8 C9 H91 109.0 109.5
C8 C9 H92 109.2 109.5
H81 C8 H82 109.7 109.4
O10 C9 H91 109.0 109.5
O10 C9 H92 109.2 109.4
C9 O10 C11 113.6 106.8
H91 C9 H92 110.1 109.5
O10 C11 C12 110.4 109.5
O10 C11 H111 109.0 109.5
O10 C11 H112 109.2 109.4
C12 C11 H111 109.0 109.5
C12 C11 H112 109.1 109.5
C11 C12 O13 110.2 109.5
C11 C12 H121 109.1 109.4
C11 C12 H122 109.2 109.4
H111 C11 H112 110.2 109.5
O13 C12 H121 109.1 109.5
O13 C12 H122 109.3 109.5
C12 O13 C14 113.5 106.8
H121 C12 H122 110.0 109.4
O13 C14 C15 109.4 109.5
O13 C14 H141 109.5 109.5
O13 C14 H142 109.5 109.5
C15 C14 H141 109.5 109.5
C15 C14 H142 109.5 109.5
C14 C15 O16 111.1 109.5
C14 C15 H151 108.6 109.4
C14 C15 H152 108.9 109.5
H141 C14 H142 109.4 109.4
O16 C15 H151 108.6 109.5
O16 C15 H152 108.9 109.4
C15 O16 C17 112.6 106.8
H151 C15 H152 110.8 109.5
O16 C17 C18 111.6 109.5
O16 C17 H171 108.3 109.5
O16 C17 H172 108.8 109.4
C18 C17 H171 108.3 109.5
C18 C17 H172 108.7 109.4
C17 C18 O19 111.0 109.6
C17 C18 H181 108.6 109.5
C17 C18 H182 109.0 109.5
H171 C17 H172 111.2 109.5
O19 C18 H181 108.6 109.4
O19 C18 H182 108.9 109.5
C18 O19 C20 113.0 106.9
H181 C18 H182 110.7 109.4
O19 C20 C21 110.9 109.5
O19 C20 H201 108.7 109.4
O19 C20 H202 109.0 109.5
C21 C20 H201 108.7 109.5
C21 C20 H202 109.0 109.4
C20 C21 O22 110.9 109.4
C20 C21 H211 108.7 109.4
C20 C21 H212 109.0 109.5
H201 C20 H202 110.6 109.5
O22 C21 H211 108.7 109.5
O22 C21 H212 109.0 109.5
C21 O22 HO2 109.5 106.8
H211 C21 H212 110.6 109.5

Torsion Angles for PE7

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C2 S1 H21 116.3 120.0
C3 C2 S1 H22 240.0 239.9
S1 C2 C3 O4 86.0 180.0
S1 C2 C3 H31 326.6 60.0
S1 C2 C3 H32 206.0 300.0
H21 C2 S1 H22 123.6 120.0
HS S1 C2 C3 323.6 180.0
HS S1 C2 H21 207.3 60.0
HS S1 C2 H22 83.6 300.0
C3 C2 S1 HS 323.6 180.0
S1 C2 C3 H21 243.7 240.1
S1 C2 C3 H22 120.0 120.0
H21 C2 C3 H22 236.3 239.9
O4 C3 C2 H31 119.4 120.0
O4 C3 C2 H32 240.0 240.0
C2 C3 O4 C5 197.8 180.0
H31 C3 C2 H32 120.6 120.0
H21 C2 S1 HS 207.3 60.0
S1 C2 H21 C3 124.4 120.0
S1 C2 H21 H22 242.3 240.1
C3 C2 H21 H22 117.8 120.1
H21 C2 C3 O4 202.3 300.0
H21 C2 C3 H31 82.9 179.9
H21 C2 C3 H32 322.3 60.0
H22 C2 S1 HS 83.6 300.0
S1 C2 H22 C3 233.5 240.0
S1 C2 H22 H21 116.7 119.9
C3 C2 H22 H21 243.2 239.9
H22 C2 C3 O4 326.0 60.0
H22 C2 C3 H31 206.6 300.0
H22 C2 C3 H32 86.0 180.0
O4 C3 C2 H21 202.3 300.0
O4 C3 C2 H22 326.0 60.0
C2 C3 O4 H31 240.6 240.0
C2 C3 O4 H32 120.0 120.0
H31 C3 O4 H32 239.4 240.1
C3 O4 C5 C6 159.1 180.0
C3 O4 C5 H51 40.0 60.0
C3 O4 C5 H52 279.1 300.0
H31 C3 C2 H21 82.9 179.9
H31 C3 C2 H22 206.6 300.0
C2 C3 H31 O4 120.7 120.0
C2 C3 H31 H32 240.3 240.0
O4 C3 H31 H32 119.6 120.0
H31 C3 O4 C5 317.2 300.1
H32 C3 C2 H21 322.3 60.0
H32 C3 C2 H22 86.0 180.0
C2 C3 H32 O4 238.9 240.0
C2 C3 H32 H31 119.5 120.0
O4 C3 H32 H31 240.6 240.0
H32 C3 O4 C5 77.8 60.0
C5 O4 C3 H31 317.2 300.1
C5 O4 C3 H32 77.8 60.0
C6 C5 O4 H51 119.1 120.0
C6 C5 O4 H52 240.0 240.0
O4 C5 C6 O7 62.3 60.0
O4 C5 C6 H61 302.6 300.0
O4 C5 C6 H62 182.3 180.0
H51 C5 O4 H52 120.9 120.0
O4 C5 C6 H51 240.9 240.0
O4 C5 C6 H52 120.0 120.0
H51 C5 C6 H52 239.1 240.0
O7 C6 C5 H61 119.7 120.0
O7 C6 C5 H62 240.0 240.0
C5 C6 O7 C8 141.5 179.9
H61 C6 C5 H62 120.3 120.0
O4 C5 H51 C6 121.2 119.9
O4 C5 H51 H52 240.6 239.9
C6 C5 H51 H52 119.4 120.0
H51 C5 C6 O7 181.3 180.0
H51 C5 C6 H61 61.6 60.0
H51 C5 C6 H62 301.4 300.0
O4 C5 H52 C6 238.2 240.0
O4 C5 H52 H51 119.1 120.0
C6 C5 H52 H51 240.9 240.0
H52 C5 C6 O7 302.3 300.0
H52 C5 C6 H61 182.6 180.0
H52 C5 C6 H62 62.3 60.0
O7 C6 C5 H51 181.3 180.0
O7 C6 C5 H52 302.3 300.0
C5 C6 O7 H61 240.3 240.0
C5 C6 O7 H62 120.0 120.0
H61 C6 O7 H62 239.7 240.0
C6 O7 C8 C9 182.9 180.0
C6 O7 C8 H81 63.0 60.0
C6 O7 C8 H82 302.9 300.0
H61 C6 C5 H51 61.6 60.0
H61 C6 C5 H52 182.6 180.0
C5 C6 H61 O7 120.5 120.0
C5 C6 H61 H62 240.2 240.0
O7 C6 H61 H62 119.8 120.0
H61 C6 O7 C8 261.2 299.9
H62 C6 C5 H51 301.4 300.0
H62 C6 C5 H52 62.3 60.0
C5 C6 H62 O7 239.3 240.0
C5 C6 H62 H61 119.7 120.0
O7 C6 H62 H61 240.3 240.0
H62 C6 O7 C8 21.5 59.9
C8 O7 C6 H61 261.2 299.9
C8 O7 C6 H62 21.5 59.9
C9 C8 O7 H81 119.9 120.0
C9 C8 O7 H82 240.0 240.0
O7 C8 C9 O10 222.7 60.1
O7 C8 C9 H91 103.1 300.0
O7 C8 C9 H92 342.7 180.0
H81 C8 O7 H82 120.2 120.0
O7 C8 C9 H81 240.1 240.0
O7 C8 C9 H82 120.0 120.1
H81 C8 C9 H82 239.9 240.1
O10 C9 C8 H91 119.7 120.0
O10 C9 C8 H92 240.0 240.0
C8 C9 O10 C11 144.7 180.0
H91 C9 C8 H92 120.3 120.0
O7 C8 H81 C9 120.1 120.0
O7 C8 H81 H82 240.0 239.9
C9 C8 H81 H82 119.9 119.9
H81 C8 C9 O10 342.6 180.1
H81 C8 C9 H91 222.9 60.0
H81 C8 C9 H92 102.6 300.0
O7 C8 H82 C9 239.8 240.0
O7 C8 H82 H81 119.9 120.0
C9 C8 H82 H81 240.1 240.1
H82 C8 C9 O10 102.7 300.0
H82 C8 C9 H91 343.1 179.9
H82 C8 C9 H92 222.7 59.9
O10 C9 C8 H81 342.6 180.1
O10 C9 C8 H82 102.7 300.0
C8 C9 O10 H91 240.3 239.9
C8 C9 O10 H92 120.0 120.0
H91 C9 O10 H92 239.7 240.1
C9 O10 C11 C12 213.0 180.0
C9 O10 C11 H111 93.3 60.0
C9 O10 C11 H112 333.0 300.0
H91 C9 C8 H81 222.9 60.0
H91 C9 C8 H82 343.1 179.9
C8 C9 H91 O10 120.5 120.1
C8 C9 H91 H92 240.2 240.0
O10 C9 H91 H92 119.8 119.9
H91 C9 O10 C11 264.4 300.1
H92 C9 C8 H81 102.6 300.0
H92 C9 C8 H82 222.7 59.9
C8 C9 H92 O10 239.3 240.0
C8 C9 H92 H91 119.7 120.0
O10 C9 H92 H91 240.3 240.1
H92 C9 O10 C11 24.7 60.0
C11 O10 C9 H91 264.4 300.1
C11 O10 C9 H92 24.7 60.0
C12 C11 O10 H111 119.6 120.1
C12 C11 O10 H112 240.0 240.0
O10 C11 C12 O13 287.0 59.9
O10 C11 C12 H121 167.3 299.9
O10 C11 C12 H122 47.0 180.0
H111 C11 O10 H112 120.4 120.0
O10 C11 C12 H111 240.4 239.9
O10 C11 C12 H112 120.0 119.9
H111 C11 C12 H112 239.6 240.0
O13 C12 C11 H121 119.7 120.0
O13 C12 C11 H122 240.0 239.9
C11 C12 O13 C14 171.8 180.0
H121 C12 C11 H122 120.3 119.9
O10 C11 H111 C12 120.5 120.0
O10 C11 H111 H112 240.2 240.0
C12 C11 H111 H112 119.7 120.0
H111 C11 C12 O13 46.6 180.0
H111 C11 C12 H121 286.9 60.0
H111 C11 C12 H122 166.6 300.1
O10 C11 H112 C12 239.3 240.0
O10 C11 H112 H111 119.6 120.0
C12 C11 H112 H111 240.4 240.0
H112 C11 C12 O13 167.0 300.0
H112 C11 C12 H121 47.3 180.0
H112 C11 C12 H122 287.0 60.1
O13 C12 C11 H111 46.6 180.0
O13 C12 C11 H112 167.0 300.0
C11 C12 O13 H121 240.3 240.0
C11 C12 O13 H122 120.0 120.0
H121 C12 O13 H122 239.7 240.0
C12 O13 C14 C15 161.7 180.0
C12 O13 C14 H141 41.7 60.0
C12 O13 C14 H142 281.7 300.0
H121 C12 C11 H111 286.9 60.0
H121 C12 C11 H112 47.3 180.0
C11 C12 H121 O13 120.4 120.0
C11 C12 H121 H122 240.2 240.1
O13 C12 H121 H122 119.8 120.1
H121 C12 O13 C14 291.6 300.0
H122 C12 C11 H111 166.6 300.1
H122 C12 C11 H112 287.0 60.1
C11 C12 H122 O13 239.4 240.0
C11 C12 H122 H121 119.7 119.9
O13 C12 H122 H121 240.3 240.0
H122 C12 O13 C14 51.9 60.0
C14 O13 C12 H121 291.6 300.0
C14 O13 C12 H122 51.9 60.0
C15 C14 O13 H141 120.0 120.0
C15 C14 O13 H142 240.0 240.0
O13 C14 C15 O16 187.3 60.0
O13 C14 C15 H151 68.0 300.0
O13 C14 C15 H152 307.2 180.0
H141 C14 O13 H142 120.0 120.0
O13 C14 C15 H141 240.0 240.0
O13 C14 C15 H142 120.0 120.0
H141 C14 C15 H142 240.0 240.0
O16 C15 C14 H151 119.3 120.0
O16 C15 C14 H152 240.0 240.0
C14 C15 O16 C17 123.4 180.0
H151 C15 C14 H152 120.7 120.0
O13 C14 H141 C15 120.0 120.0
O13 C14 H141 H142 240.0 240.0
C15 C14 H141 H142 120.0 120.0
H141 C14 C15 O16 307.3 180.0
H141 C14 C15 H151 188.0 60.0
H141 C14 C15 H152 67.3 300.0
O13 C14 H142 C15 240.0 240.0
O13 C14 H142 H141 120.1 120.0
C15 C14 H142 H141 240.0 240.0
H142 C14 C15 O16 67.3 300.0
H142 C14 C15 H151 308.0 180.0
H142 C14 C15 H152 187.2 60.0
O16 C15 C14 H141 307.3 180.0
O16 C15 C14 H142 67.3 300.0
C14 C15 O16 H151 240.7 240.0
C14 C15 O16 H152 120.0 120.0
H151 C15 O16 H152 239.3 240.0
C15 O16 C17 C18 122.9 180.0
C15 O16 C17 H171 3.9 60.0
C15 O16 C17 H172 242.9 300.0
H151 C15 C14 H141 188.0 60.0
H151 C15 C14 H142 308.0 180.0
C14 C15 H151 O16 120.9 120.0
C14 C15 H151 H152 240.5 240.0
O16 C15 H151 H152 119.6 120.0
H151 C15 O16 C17 242.8 300.0
H152 C15 C14 H141 67.3 300.0
H152 C15 C14 H142 187.2 60.0
C14 C15 H152 O16 238.7 240.0
C14 C15 H152 H151 119.3 120.0
O16 C15 H152 H151 240.7 240.0
H152 C15 O16 C17 3.5 60.0
C17 O16 C15 H151 242.8 300.0
C17 O16 C15 H152 3.5 60.0
C18 C17 O16 H171 119.1 120.1
C18 C17 O16 H172 240.0 240.1
O16 C17 C18 O19 41.6 59.9
O16 C17 C18 H181 282.3 299.9
O16 C17 C18 H182 161.6 180.0
H171 C17 O16 H172 121.0 120.0
O16 C17 C18 H171 240.9 239.9
O16 C17 C18 H172 120.0 119.9
H171 C17 C18 H172 239.1 240.0
O19 C18 C17 H181 119.3 120.0
O19 C18 C17 H182 240.0 239.9
C17 C18 O19 C20 117.1 180.0
H181 C18 C17 H182 120.7 119.9
O16 C17 H171 C18 121.2 120.1
O16 C17 H171 H172 240.6 240.0
C18 C17 H171 H172 119.4 119.9
H171 C17 C18 O19 160.7 180.0
H171 C17 C18 H181 41.4 60.0
H171 C17 C18 H182 280.7 300.1
O16 C17 H172 C18 238.2 240.0
O16 C17 H172 H171 119.1 120.0
C18 C17 H172 H171 240.9 240.0
H172 C17 C18 O19 281.6 300.0
H172 C17 C18 H181 162.3 180.0
H172 C17 C18 H182 41.6 60.1
O19 C18 C17 H171 160.7 180.0
O19 C18 C17 H172 281.6 300.0
C17 C18 O19 H181 240.6 240.0
C17 C18 O19 H182 120.0 120.1
H181 C18 O19 H182 239.4 240.1
C18 O19 C20 C21 146.1 180.0
C18 O19 C20 H201 26.7 60.0
C18 O19 C20 H202 266.1 300.0
H181 C18 C17 H171 41.4 60.0
H181 C18 C17 H172 162.3 180.0
C17 C18 H181 O19 120.9 120.1
C17 C18 H181 H182 240.4 240.0
O19 C18 H181 H182 119.5 119.9
H181 C18 O19 C20 236.4 300.0
H182 C18 C17 H171 280.7 300.1
H182 C18 C17 H172 41.6 60.1
C17 C18 H182 O19 238.7 239.8
C17 C18 H182 H181 119.4 119.9
O19 C18 H182 H181 240.7 240.1
H182 C18 O19 C20 357.0 59.9
C20 O19 C18 H181 236.4 300.0
C20 O19 C18 H182 357.0 59.9
C21 C20 O19 H201 119.4 120.0
C21 C20 O19 H202 240.0 240.0
O19 C20 C21 O22 63.0 60.0
O19 C20 C21 H211 303.6 300.1
O19 C20 C21 H212 183.1 180.0
H201 C20 O19 H202 120.6 120.0
O19 C20 C21 H201 240.6 240.0
O19 C20 C21 H202 120.0 120.1
H201 C20 C21 H202 239.4 240.0
O22 C21 C20 H211 119.4 120.0
O22 C21 C20 H212 240.0 240.0
C20 C21 O22 HO2 231.0 180.1
H211 C21 C20 H212 120.6 120.0
O19 C20 H201 C21 120.8 120.0
O19 C20 H201 H202 240.4 239.9
C21 C20 H201 H202 119.6 119.9
H201 C20 C21 O22 182.5 180.0
H201 C20 C21 H211 63.1 60.0
H201 C20 C21 H212 302.5 300.0
O19 C20 H202 C21 238.9 240.0
O19 C20 H202 H201 119.4 120.0
C21 C20 H202 H201 240.6 240.0
H202 C20 C21 O22 303.1 300.0
H202 C20 C21 H211 183.6 180.0
H202 C20 C21 H212 63.1 60.0
O22 C21 C20 H201 182.5 180.0
O22 C21 C20 H202 303.1 300.0
C20 C21 O22 H211 240.6 240.1
C20 C21 O22 H212 120.0 120.0
H211 C21 O22 H212 239.4 240.0
H211 C21 C20 H201 63.1 60.0
H211 C21 C20 H202 183.6 180.0
C20 C21 H211 O22 120.8 120.0
C20 C21 H211 H212 240.4 240.0
O22 C21 H211 H212 119.6 120.0
H211 C21 O22 HO2 350.5 300.0
H212 C21 C20 H201 302.5 300.0
H212 C21 C20 H202 63.1 60.0
C20 C21 H212 O22 238.8 240.0
C20 C21 H212 H211 119.4 120.0
O22 C21 H212 H211 240.6 240.0
H212 C21 O22 HO2 111.0 60.1
HO2 O22 C21 H211 350.5 300.0
HO2 O22 C21 H212 111.0 60.1