PDB Chemical Component PE2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PE2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
N3 |
1.300 |
1.313 |
| C2 |
N2 |
1.331 |
1.373 |
| C2 |
N1 |
1.378 |
1.363 |
| C4 |
C5 |
1.382 |
1.400 |
| C4 |
N9 |
1.371 |
1.368 |
| C4 |
N3 |
1.306 |
1.338 |
| C5 |
C6 |
1.444 |
1.415 |
| C5 |
N7 |
1.410 |
1.355 |
| C4' |
O4' |
1.421 |
1.429 |
| C4' |
C2' |
1.522 |
1.529 |
| C4' |
H4'1 |
1.115 |
1.090 |
| C4' |
H4'2 |
1.115 |
1.090 |
| O4' |
HO4' |
0.950 |
0.968 |
| C3' |
O3' |
1.405 |
1.429 |
| C3' |
C2' |
1.497 |
1.530 |
| C3' |
H3'1 |
1.115 |
1.090 |
| C3' |
H3'2 |
1.115 |
1.089 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
C12 |
1.502 |
1.529 |
| C2' |
H2' |
1.115 |
1.090 |
| C12 |
C1' |
1.502 |
1.529 |
| C12 |
H121 |
1.114 |
1.090 |
| C12 |
H122 |
1.115 |
1.089 |
| C1' |
N9 |
1.473 |
1.464 |
| C1' |
H1'1 |
1.115 |
1.089 |
| C1' |
H1'2 |
1.115 |
1.090 |
| N9 |
C8 |
1.365 |
1.365 |
| N2 |
HN21 |
1.019 |
0.970 |
| N2 |
HN22 |
1.020 |
0.969 |
| N1 |
C6 |
1.364 |
1.351 |
| N1 |
HN1 |
1.020 |
0.971 |
| C6 |
O6 |
1.266 |
1.219 |
| N7 |
C8 |
1.297 |
1.300 |
| C8 |
H8 |
1.103 |
1.080 |
Bond Angles for PE2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N2 |
113.8 |
119.1 |
| N3 |
C2 |
N1 |
126.8 |
121.9 |
| C2 |
N3 |
C4 |
108.3 |
121.1 |
| N2 |
C2 |
N1 |
119.4 |
119.0 |
| C2 |
N2 |
HN21 |
113.8 |
120.0 |
| C2 |
N2 |
HN22 |
110.6 |
120.0 |
| C2 |
N1 |
C6 |
127.5 |
120.4 |
| C2 |
N1 |
HN1 |
116.8 |
119.9 |
| C5 |
C4 |
N9 |
107.9 |
106.1 |
| C5 |
C4 |
N3 |
130.2 |
119.7 |
| C4 |
C5 |
C6 |
121.4 |
118.6 |
| C4 |
C5 |
N7 |
109.3 |
107.3 |
| N9 |
C4 |
N3 |
121.9 |
134.2 |
| C4 |
N9 |
C1' |
127.0 |
126.3 |
| C4 |
N9 |
C8 |
103.4 |
107.5 |
| C6 |
C5 |
N7 |
129.3 |
134.1 |
| C5 |
C6 |
N1 |
105.8 |
118.3 |
| C5 |
C6 |
O6 |
132.3 |
120.8 |
| C5 |
N7 |
C8 |
102.5 |
109.3 |
| O4' |
C4' |
C2' |
106.1 |
109.5 |
| O4' |
C4' |
H4'1 |
113.5 |
109.5 |
| O4' |
C4' |
H4'2 |
113.5 |
109.5 |
| C4' |
O4' |
HO4' |
106.0 |
106.8 |
| C2' |
C4' |
H4'1 |
113.5 |
109.5 |
| C2' |
C4' |
H4'2 |
113.5 |
109.5 |
| C4' |
C2' |
C3' |
106.4 |
109.5 |
| C4' |
C2' |
C12 |
109.9 |
109.5 |
| C4' |
C2' |
H2' |
109.8 |
109.5 |
| H4'1 |
C4' |
H4'2 |
96.9 |
109.4 |
| O3' |
C3' |
C2' |
110.1 |
109.5 |
| O3' |
C3' |
H3'1 |
112.0 |
109.5 |
| O3' |
C3' |
H3'2 |
112.0 |
109.4 |
| C3' |
O3' |
HO3' |
110.1 |
106.8 |
| C2' |
C3' |
H3'1 |
111.9 |
109.5 |
| C2' |
C3' |
H3'2 |
112.0 |
109.4 |
| C3' |
C2' |
C12 |
104.9 |
109.5 |
| C3' |
C2' |
H2' |
114.5 |
109.4 |
| H3'1 |
C3' |
H3'2 |
98.4 |
109.5 |
| C12 |
C2' |
H2' |
111.2 |
109.5 |
| C2' |
C12 |
C1' |
111.1 |
109.5 |
| C2' |
C12 |
H121 |
111.6 |
109.5 |
| C2' |
C12 |
H122 |
111.6 |
109.5 |
| C1' |
C12 |
H121 |
111.6 |
109.5 |
| C1' |
C12 |
H122 |
111.6 |
109.4 |
| C12 |
C1' |
N9 |
104.0 |
109.5 |
| C12 |
C1' |
H1'1 |
114.3 |
109.5 |
| C12 |
C1' |
H1'2 |
114.3 |
109.5 |
| H121 |
C12 |
H122 |
98.8 |
109.5 |
| N9 |
C1' |
H1'1 |
114.3 |
109.5 |
| N9 |
C1' |
H1'2 |
114.3 |
109.5 |
| C1' |
N9 |
C8 |
129.5 |
126.2 |
| H1'1 |
C1' |
H1'2 |
96.1 |
109.4 |
| N9 |
C8 |
N7 |
116.9 |
109.8 |
| N9 |
C8 |
H8 |
123.9 |
125.1 |
| HN21 |
N2 |
HN22 |
110.6 |
120.0 |
| C6 |
N1 |
HN1 |
115.7 |
119.8 |
| N1 |
C6 |
O6 |
121.9 |
120.9 |
| N7 |
C8 |
H8 |
119.2 |
125.1 |
Torsion Angles for PE2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C2 |
N3 |
N1 |
178.1 |
179.8 |
| N3 |
C2 |
N2 |
HN21 |
180.0 |
360.0 |
| N3 |
C2 |
N2 |
HN22 |
54.7 |
179.7 |
| N3 |
C2 |
N1 |
C6 |
358.5 |
359.5 |
| N3 |
C2 |
N1 |
HN1 |
178.6 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
359.5 |
0.1 |
| N9 |
C4 |
N3 |
C2 |
179.9 |
180.0 |
| N3 |
C2 |
N2 |
N1 |
181.7 |
180.2 |
| N2 |
C2 |
N3 |
C4 |
179.9 |
180.0 |
| N2 |
C2 |
N1 |
C6 |
180.5 |
179.7 |
| N2 |
C2 |
N1 |
HN1 |
0.5 |
0.2 |
| HN21 |
N2 |
C2 |
HN22 |
125.2 |
180.2 |
| N3 |
C2 |
N1 |
N2 |
178.0 |
179.8 |
| N1 |
C2 |
N3 |
C4 |
1.7 |
0.2 |
| N1 |
C2 |
N2 |
HN21 |
358.2 |
179.8 |
| N1 |
C2 |
N2 |
HN22 |
233.0 |
359.5 |
| C5 |
C6 |
N1 |
C2 |
359.8 |
0.5 |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
179.5 |
| C2 |
N1 |
C6 |
O6 |
179.2 |
180.3 |
| C2 |
N3 |
C4 |
C5 |
359.5 |
0.1 |
| N9 |
C4 |
C5 |
N3 |
179.7 |
180.0 |
| C5 |
C4 |
N9 |
C1' |
177.6 |
180.0 |
| C5 |
C4 |
N9 |
C8 |
359.4 |
0.0 |
| C6 |
C5 |
C4 |
N7 |
177.8 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
1.3 |
359.8 |
| C4 |
C5 |
C6 |
O6 |
182.0 |
180.0 |
| C4 |
C5 |
N7 |
C8 |
359.4 |
360.0 |
| C2 |
N3 |
C4 |
N9 |
179.9 |
180.0 |
| C5 |
C4 |
N9 |
N3 |
180.3 |
180.0 |
| N9 |
C4 |
C5 |
C6 |
178.6 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
0.8 |
360.0 |
| C12 |
C1' |
N9 |
C4 |
112.5 |
270.0 |
| C4 |
N9 |
C1' |
H1'1 |
347.3 |
30.1 |
| C4 |
N9 |
C1' |
H1'2 |
237.8 |
150.0 |
| C1' |
N9 |
C4 |
C8 |
178.2 |
180.0 |
| C4 |
N9 |
C8 |
N7 |
0.2 |
360.0 |
| C4 |
N9 |
C8 |
H8 |
180.2 |
180.0 |
| C4 |
N3 |
C2 |
N2 |
179.9 |
180.0 |
| C4 |
N3 |
C2 |
N1 |
1.7 |
0.2 |
| C5 |
C4 |
N3 |
N9 |
179.6 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
358.9 |
359.9 |
| N3 |
C4 |
C5 |
N7 |
181.1 |
180.0 |
| N3 |
C4 |
N9 |
C1' |
357.3 |
0.0 |
| N3 |
C4 |
N9 |
C8 |
179.1 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
359.8 |
0.5 |
| C6 |
C5 |
C4 |
N9 |
178.6 |
180.0 |
| C6 |
C5 |
C4 |
N3 |
358.9 |
359.9 |
| C4 |
C5 |
C6 |
N7 |
182.7 |
180.0 |
| C6 |
C5 |
N7 |
C8 |
181.8 |
180.0 |
| C5 |
C6 |
N1 |
HN1 |
179.7 |
180.0 |
| N1 |
C6 |
C5 |
O6 |
179.3 |
179.8 |
| N7 |
C5 |
C4 |
N9 |
0.8 |
360.0 |
| N7 |
C5 |
C4 |
N3 |
181.1 |
180.0 |
| C4 |
C5 |
N7 |
C6 |
177.5 |
180.0 |
| N7 |
C5 |
C6 |
N1 |
178.6 |
179.7 |
| N7 |
C5 |
C6 |
O6 |
359.3 |
359.9 |
| N9 |
C8 |
N7 |
C5 |
0.2 |
0.0 |
| C5 |
N7 |
C8 |
H8 |
180.2 |
180.0 |
| C2' |
C4' |
O4' |
H4'1 |
234.7 |
120.0 |
| C2' |
C4' |
O4' |
H4'2 |
125.3 |
240.0 |
| O4' |
C4' |
C2' |
C3' |
179.6 |
60.0 |
| O4' |
C4' |
C2' |
C12 |
66.6 |
180.0 |
| O4' |
C4' |
C2' |
H2' |
304.0 |
300.0 |
| H4'1 |
C4' |
O4' |
H4'2 |
250.6 |
120.0 |
| O4' |
C4' |
C2' |
H4'1 |
125.3 |
240.0 |
| O4' |
C4' |
C2' |
H4'2 |
234.7 |
120.0 |
| C2' |
C4' |
O4' |
HO4' |
180.0 |
180.0 |
| H4'1 |
C4' |
C2' |
H4'2 |
109.4 |
240.1 |
| O3' |
C3' |
C2' |
C4' |
191.9 |
60.0 |
| C4' |
C2' |
C3' |
H3'1 |
66.6 |
180.0 |
| C4' |
C2' |
C3' |
H3'2 |
317.2 |
300.1 |
| C3' |
C2' |
C4' |
C12 |
113.0 |
240.0 |
| C3' |
C2' |
C4' |
H2' |
235.6 |
119.9 |
| C12 |
C2' |
C4' |
H2' |
122.6 |
240.0 |
| C4' |
C2' |
C12 |
C1' |
68.2 |
180.0 |
| C4' |
C2' |
C12 |
H121 |
193.4 |
60.0 |
| C4' |
C2' |
C12 |
H122 |
303.0 |
300.0 |
| O4' |
C4' |
H4'1 |
C2' |
238.8 |
120.0 |
| O4' |
C4' |
H4'1 |
H4'2 |
119.4 |
240.0 |
| H4'1 |
C4' |
O4' |
HO4' |
305.3 |
60.0 |
| C2' |
C4' |
H4'1 |
H4'2 |
240.6 |
119.9 |
| H4'1 |
C4' |
C2' |
C3' |
54.3 |
180.0 |
| H4'1 |
C4' |
C2' |
C12 |
301.3 |
300.0 |
| H4'1 |
C4' |
C2' |
H2' |
178.7 |
60.1 |
| O4' |
C4' |
H4'2 |
C2' |
121.2 |
240.0 |
| O4' |
C4' |
H4'2 |
H4'1 |
240.6 |
120.0 |
| H4'2 |
C4' |
O4' |
HO4' |
54.7 |
300.0 |
| C2' |
C4' |
H4'2 |
H4'1 |
119.4 |
240.0 |
| H4'2 |
C4' |
C2' |
C3' |
304.9 |
299.9 |
| H4'2 |
C4' |
C2' |
C12 |
191.9 |
60.0 |
| H4'2 |
C4' |
C2' |
H2' |
69.3 |
180.0 |
| HO4' |
O4' |
C4' |
C2' |
180.0 |
180.0 |
| HO4' |
O4' |
C4' |
H4'1 |
305.3 |
60.0 |
| HO4' |
O4' |
C4' |
H4'2 |
54.7 |
300.0 |
| C4' |
C2' |
C3' |
O3' |
191.9 |
60.0 |
| C2' |
C3' |
O3' |
H3'1 |
234.7 |
120.0 |
| C2' |
C3' |
O3' |
H3'2 |
125.3 |
240.1 |
| O3' |
C3' |
C2' |
C12 |
308.4 |
300.0 |
| O3' |
C3' |
C2' |
H2' |
70.5 |
180.0 |
| H3'1 |
C3' |
O3' |
H3'2 |
250.6 |
120.0 |
| C3' |
C2' |
C4' |
H4'1 |
54.3 |
180.0 |
| C3' |
C2' |
C4' |
H4'2 |
304.9 |
299.9 |
| C4' |
C2' |
C3' |
C12 |
243.5 |
120.1 |
| C4' |
C2' |
C3' |
H2' |
121.4 |
240.0 |
| O3' |
C3' |
C2' |
H3'1 |
125.3 |
240.0 |
| O3' |
C3' |
C2' |
H3'2 |
234.7 |
119.9 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
| H3'1 |
C3' |
C2' |
H3'2 |
109.4 |
240.0 |
| C12 |
C2' |
C3' |
H2' |
237.9 |
120.0 |
| C3' |
C2' |
C12 |
C1' |
314.2 |
300.0 |
| C3' |
C2' |
C12 |
H121 |
79.4 |
180.0 |
| C3' |
C2' |
C12 |
H122 |
188.9 |
60.0 |
| O3' |
C3' |
H3'1 |
C2' |
235.7 |
120.0 |
| O3' |
C3' |
H3'1 |
H3'2 |
117.9 |
240.0 |
| H3'1 |
C3' |
O3' |
HO3' |
305.3 |
60.0 |
| C2' |
C3' |
H3'1 |
H3'2 |
242.1 |
120.0 |
| H3'1 |
C3' |
C2' |
C12 |
183.1 |
60.0 |
| H3'1 |
C3' |
C2' |
H2' |
305.2 |
300.0 |
| O3' |
C3' |
H3'2 |
C2' |
124.3 |
240.0 |
| O3' |
C3' |
H3'2 |
H3'1 |
242.1 |
120.0 |
| H3'2 |
C3' |
O3' |
HO3' |
54.7 |
299.9 |
| C2' |
C3' |
H3'2 |
H3'1 |
117.8 |
240.0 |
| H3'2 |
C3' |
C2' |
C12 |
73.7 |
180.0 |
| H3'2 |
C3' |
C2' |
H2' |
195.8 |
60.0 |
| HO3' |
O3' |
C3' |
C2' |
180.0 |
180.0 |
| HO3' |
O3' |
C3' |
H3'1 |
305.3 |
60.0 |
| HO3' |
O3' |
C3' |
H3'2 |
54.7 |
299.9 |
| C12 |
C2' |
C4' |
H4'1 |
301.3 |
300.0 |
| C12 |
C2' |
C4' |
H4'2 |
191.9 |
60.0 |
| C4' |
C2' |
C12 |
C3' |
114.0 |
240.0 |
| C4' |
C2' |
C12 |
H2' |
238.3 |
120.0 |
| C12 |
C2' |
C3' |
H3'1 |
183.1 |
60.0 |
| C12 |
C2' |
C3' |
H3'2 |
73.7 |
180.0 |
| C3' |
C2' |
C12 |
H2' |
124.2 |
240.0 |
| C1' |
C12 |
C2' |
H121 |
234.7 |
120.0 |
| C1' |
C12 |
C2' |
H122 |
125.2 |
240.0 |
| C2' |
C12 |
C1' |
N9 |
135.4 |
180.0 |
| C2' |
C12 |
C1' |
H1'1 |
260.7 |
59.9 |
| C2' |
C12 |
C1' |
H1'2 |
10.1 |
300.0 |
| H121 |
C12 |
C2' |
H122 |
250.5 |
120.0 |
| H2' |
C2' |
C4' |
H4'1 |
178.7 |
60.1 |
| H2' |
C2' |
C4' |
H4'2 |
69.3 |
180.0 |
| C4' |
C2' |
H2' |
C3' |
240.5 |
120.0 |
| C4' |
C2' |
H2' |
C12 |
121.9 |
240.0 |
| H2' |
C2' |
C3' |
H3'1 |
305.2 |
300.0 |
| H2' |
C2' |
C3' |
H3'2 |
195.8 |
60.0 |
| C3' |
C2' |
H2' |
C12 |
241.4 |
120.0 |
| H2' |
C2' |
C12 |
C1' |
189.9 |
60.0 |
| H2' |
C2' |
C12 |
H121 |
315.2 |
300.0 |
| H2' |
C2' |
C12 |
H122 |
64.7 |
180.0 |
| C4 |
N9 |
C1' |
C12 |
112.5 |
270.0 |
| C1' |
C12 |
C2' |
H2' |
189.9 |
60.0 |
| C2' |
C12 |
C1' |
H121 |
125.3 |
240.0 |
| C2' |
C12 |
C1' |
H122 |
234.8 |
120.0 |
| H121 |
C12 |
C1' |
H122 |
109.5 |
240.0 |
| N9 |
C1' |
C12 |
H1'1 |
234.7 |
120.1 |
| N9 |
C1' |
C12 |
H1'2 |
125.3 |
240.0 |
| C12 |
C1' |
N9 |
C8 |
290.2 |
90.0 |
| H1'1 |
C1' |
C12 |
H1'2 |
250.6 |
119.9 |
| H121 |
C12 |
C2' |
H2' |
315.2 |
300.0 |
| C2' |
C12 |
H121 |
C1' |
235.0 |
120.0 |
| C2' |
C12 |
H121 |
H122 |
117.5 |
240.0 |
| C1' |
C12 |
H121 |
H122 |
242.5 |
119.9 |
| H121 |
C12 |
C1' |
N9 |
10.1 |
300.0 |
| H121 |
C12 |
C1' |
H1'1 |
135.4 |
180.0 |
| H121 |
C12 |
C1' |
H1'2 |
244.8 |
60.0 |
| H122 |
C12 |
C2' |
H2' |
64.7 |
180.0 |
| C2' |
C12 |
H122 |
C1' |
125.0 |
240.0 |
| C2' |
C12 |
H122 |
H121 |
242.5 |
120.0 |
| C1' |
C12 |
H122 |
H121 |
117.5 |
240.0 |
| H122 |
C12 |
C1' |
N9 |
260.6 |
60.0 |
| H122 |
C12 |
C1' |
H1'1 |
25.9 |
299.9 |
| H122 |
C12 |
C1' |
H1'2 |
135.3 |
180.0 |
| C1' |
N9 |
C4 |
N3 |
357.3 |
0.0 |
| C4 |
N9 |
C1' |
C8 |
182.3 |
180.0 |
| N9 |
C1' |
C12 |
H121 |
10.1 |
300.0 |
| N9 |
C1' |
C12 |
H122 |
260.6 |
60.0 |
| C12 |
C1' |
N9 |
H1'1 |
125.3 |
239.9 |
| C12 |
C1' |
N9 |
H1'2 |
234.7 |
120.0 |
| H1'1 |
C1' |
N9 |
H1'2 |
109.4 |
240.1 |
| C1' |
N9 |
C8 |
N7 |
182.1 |
180.0 |
| C1' |
N9 |
C8 |
H8 |
2.1 |
0.0 |
| H1'1 |
C1' |
C12 |
H121 |
135.4 |
180.0 |
| H1'1 |
C1' |
C12 |
H122 |
25.9 |
299.9 |
| C12 |
C1' |
H1'1 |
N9 |
240.3 |
120.1 |
| C12 |
C1' |
H1'1 |
H1'2 |
120.2 |
240.0 |
| N9 |
C1' |
H1'1 |
H1'2 |
239.8 |
119.9 |
| H1'1 |
C1' |
N9 |
C8 |
165.0 |
210.1 |
| H1'2 |
C1' |
C12 |
H121 |
244.8 |
60.0 |
| H1'2 |
C1' |
C12 |
H122 |
135.3 |
180.0 |
| C12 |
C1' |
H1'2 |
N9 |
119.7 |
240.0 |
| C12 |
C1' |
H1'2 |
H1'1 |
239.8 |
120.0 |
| N9 |
C1' |
H1'2 |
H1'1 |
120.1 |
240.1 |
| H1'2 |
C1' |
N9 |
C8 |
55.6 |
330.0 |
| C8 |
N9 |
C4 |
N3 |
179.1 |
180.0 |
| C4 |
N9 |
C8 |
C1' |
178.1 |
180.0 |
| C5 |
N7 |
C8 |
N9 |
0.2 |
0.0 |
| C8 |
N9 |
C1' |
H1'1 |
165.0 |
210.1 |
| C8 |
N9 |
C1' |
H1'2 |
55.6 |
330.0 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| HN21 |
N2 |
C2 |
N1 |
358.2 |
179.8 |
| C2 |
N2 |
HN21 |
HN22 |
234.7 |
179.8 |
| HN22 |
N2 |
C2 |
N1 |
233.0 |
359.5 |
| C2 |
N2 |
HN22 |
HN21 |
127.0 |
180.2 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
180.5 |
| N1 |
C6 |
C5 |
N7 |
178.6 |
179.7 |
| C5 |
C6 |
N1 |
O6 |
180.6 |
180.2 |
| C2 |
N1 |
HN1 |
C6 |
180.0 |
179.5 |
| HN1 |
N1 |
C6 |
O6 |
359.2 |
359.8 |
| O6 |
C6 |
C5 |
N7 |
359.3 |
359.9 |
| C5 |
C6 |
O6 |
N1 |
179.2 |
179.8 |
| O6 |
C6 |
N1 |
HN1 |
359.2 |
359.8 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
179.9 |