PDB Chemical Component PDQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PDQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O2 1.179 1.216
C1 C3 1.597 1.472
C1 N17 1.465 1.351
C3 C4 1.603 1.395
C3 C12 1.364 1.407
C4 C6 1.411 1.367
C4 H4 1.080 1.079
C6 F7 1.368 1.351
C6 C8 1.548 1.396
C8 C10 1.430 1.390
C8 N33 1.480 1.392
C10 C12 1.632 1.383
C10 C29 1.524 1.507
C12 N13 1.615 1.389
N13 C15 1.468 1.344
N13 C18 1.450 1.464
C15 O16 1.182 1.216
C15 N17 1.427 1.343
N17 N26 1.426 1.366
C18 C20 1.538 1.530
C18 C23 1.542 1.530
C18 H18 1.100 1.090
C20 C23 1.523 1.530
C20 H20 1.100 1.090
C20 H20A 1.100 1.090
C23 H23 1.101 1.090
C23 H23A 1.100 1.089
N26 HN26 1.000 1.010
N26 HN2A 1.000 1.009
C29 H29 1.100 1.091
C29 H29A 1.100 1.090
C29 H29B 1.100 1.091
N33 C34 1.492 1.475
N33 C42 1.469 1.478
C34 C37 1.430 1.543
C34 H34 1.100 1.091
C34 H34A 1.100 1.090
C37 C39 1.418 1.551
C37 C45 1.438 1.530
C37 H37 1.100 1.091
C39 C42 1.506 1.549
C39 H39 1.100 1.091
C39 H39A 1.100 1.090
C42 H42 1.100 1.090
C42 H42A 1.100 1.090
C45 C47 1.518 1.530
C45 N51 1.442 1.469
C45 H45 1.100 1.090
C47 H47 1.100 1.090
C47 H47A 1.100 1.090
C47 H47B 1.100 1.089
N51 HN51 1.000 1.009
N51 HN5A 1.000 1.009

Bond Angles for PDQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 C1 C3 119.4 120.8
O2 C1 N17 120.6 120.8
C3 C1 N17 120.0 118.3
C1 C3 C4 118.6 121.6
C1 C3 C12 120.1 118.2
C1 N17 C15 121.6 121.3
C1 N17 N26 119.0 119.3
C4 C3 C12 121.4 120.2
C3 C4 C6 119.9 119.7
C3 C4 H4 120.1 120.2
C3 C12 C10 118.9 119.7
C3 C12 N13 117.5 118.8
C6 C4 H4 120.1 120.1
C4 C6 F7 121.0 119.8
C4 C6 C8 120.1 120.4
F7 C6 C8 119.0 119.8
C6 C8 C10 120.8 120.4
C6 C8 N33 118.1 119.8
C10 C8 N33 121.0 119.7
C8 C10 C12 119.0 119.6
C8 C10 C29 118.5 120.2
C8 N33 C34 123.3 111.0
C8 N33 C42 127.9 111.0
C12 C10 C29 122.4 120.2
C10 C12 N13 123.6 121.5
C10 C29 H29 109.5 109.5
C10 C29 H29A 109.5 109.5
C10 C29 H29B 109.5 109.5
C12 N13 C15 121.6 120.6
C12 N13 C18 114.2 119.7
C15 N13 C18 123.9 119.7
N13 C15 O16 120.3 118.7
N13 C15 N17 119.2 122.8
N13 C18 C20 113.2 117.5
N13 C18 C23 117.4 117.5
N13 C18 H18 95.5 115.6
O16 C15 N17 120.5 118.6
C15 N17 N26 119.3 119.3
N17 N26 HN26 109.5 111.0
N17 N26 HN2A 109.5 111.0
C20 C18 C23 59.3 60.0
C20 C18 H18 137.2 117.5
C18 C20 C23 60.5 60.0
C18 C20 H20 130.6 117.5
C18 C20 H20A 130.6 117.5
C23 C18 H18 133.7 117.5
C18 C23 C20 60.3 60.0
C18 C23 H23 130.7 117.5
C18 C23 H23A 130.7 117.5
C23 C20 H20 130.6 117.5
C23 C20 H20A 130.7 117.5
C20 C23 H23 130.8 117.5
C20 C23 H23A 130.7 117.5
H20 C20 H20A 82.2 115.5
H23 C23 H23A 82.0 115.6
HN26 N26 HN2A 109.5 110.9
H29 C29 H29A 109.5 109.5
H29 C29 H29B 109.5 109.4
H29A C29 H29B 109.5 109.5
C34 N33 C42 108.8 108.5
N33 C34 C37 105.2 107.3
N33 C34 H34 110.9 109.8
N33 C34 H34A 110.9 109.9
N33 C42 C39 103.3 104.8
N33 C42 H42 111.6 110.4
N33 C42 H42A 111.6 110.4
C37 C34 H34 110.9 109.9
C37 C34 H34A 110.9 109.9
C34 C37 C39 109.0 103.1
C34 C37 C45 109.7 110.7
C34 C37 H37 111.0 110.7
H34 C34 H34A 108.0 110.0
C39 C37 C45 113.3 110.7
C39 C37 H37 107.2 110.7
C37 C39 C42 106.4 101.6
C37 C39 H39 110.5 111.0
C37 C39 H39A 110.5 111.1
C45 C37 H37 106.6 110.7
C37 C45 C47 110.6 109.5
C37 C45 N51 109.1 109.5
C37 C45 H45 108.8 109.5
C42 C39 H39 110.5 111.0
C42 C39 H39A 110.5 111.0
C39 C42 H42 111.6 110.4
C39 C42 H42A 111.6 110.4
H39 C39 H39A 108.4 110.9
H42 C42 H42A 107.3 110.3
C47 C45 N51 108.8 109.4
C47 C45 H45 109.0 109.5
C45 C47 H47 109.5 109.4
C45 C47 H47A 109.5 109.5
C45 C47 H47B 109.5 109.5
N51 C45 H45 110.5 109.5
C45 N51 HN51 109.5 111.0
C45 N51 HN5A 109.4 111.0
H47 C47 H47A 109.5 109.4
H47 C47 H47B 109.5 109.5
H47A C47 H47B 109.5 109.5
HN51 N51 HN5A 109.5 111.0

Torsion Angles for PDQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C1 O2 N17 178.7 180.3
O2 C1 C3 C4 1.4 360.0
O2 C1 C3 C12 181.2 180.0
O2 C1 N17 C15 178.6 179.7
O2 C1 N17 N26 359.9 0.0
O2 C1 C3 N17 181.3 179.7
C3 C1 N17 C15 359.9 359.4
C3 C1 N17 N26 181.2 179.7
C4 C3 C1 C12 180.2 180.0
C1 C3 C4 C6 179.8 179.9
C1 C3 C4 H4 359.8 0.0
C1 C3 C12 C10 179.8 180.0
C1 C3 C12 N13 0.1 360.0
O2 C1 N17 C3 178.7 180.3
N17 C1 C3 C4 180.1 180.3
N17 C1 C3 C12 359.9 0.3
N13 C15 N17 C1 0.2 0.6
O16 C15 N17 C1 178.7 180.3
C15 N17 C1 N26 178.8 179.7
C1 N17 N26 HN26 180.0 0.0
C1 N17 N26 HN2A 300.0 123.9
C4 C3 C1 N17 180.1 180.3
C1 C3 C4 C12 179.8 180.0
C4 C3 C12 C10 359.7 0.0
C4 C3 C12 N13 179.9 180.0
C6 C4 C3 H4 180.0 179.9
C3 C4 C6 F7 180.0 180.0
C3 C4 C6 C8 0.0 0.0
C12 C3 C1 N17 359.9 0.3
C1 C3 C12 C4 180.2 180.0
C12 C3 C4 C6 360.0 359.9
C12 C3 C4 H4 180.0 180.0
C8 C10 C12 C3 0.7 0.0
C3 C12 C10 C29 179.2 180.0
C10 C12 C3 N13 179.8 180.0
C3 C12 N13 C15 0.0 0.0
C3 C12 N13 C18 173.8 180.0
C6 C4 C3 C12 360.0 359.9
C3 C4 C6 H4 180.0 180.1
F7 C6 C4 C8 180.0 180.0
C4 C6 C8 C10 0.3 0.0
C4 C6 C8 N33 176.8 179.9
H4 C4 C3 C12 180.0 180.0
C3 C4 H4 C6 180.0 179.9
H4 C4 C6 F7 0.0 360.0
H4 C4 C6 C8 180.0 180.0
F7 C6 C4 H4 0.0 360.0
C4 C6 F7 C8 180.0 180.0
F7 C6 C8 C10 180.4 180.0
F7 C6 C8 N33 356.9 359.9
C8 C6 C4 H4 180.0 180.0
C4 C6 C8 F7 180.0 180.0
C10 C8 C6 N33 183.5 180.1
C6 C8 C10 C12 359.3 360.0
C6 C8 C10 C29 180.8 180.0
C6 C8 N33 C34 277.5 300.1
C6 C8 N33 C42 95.2 60.8
C3 C12 C10 C8 0.7 0.0
C6 C8 C10 N33 176.4 179.9
C10 C8 N33 C34 94.0 120.0
C10 C8 N33 C42 271.7 240.8
C12 C10 C8 C29 178.5 179.9
C8 C10 C12 N13 180.4 180.1
C8 C10 C29 H29 89.3 106.1
C8 C10 C29 H29A 209.3 226.2
C8 C10 C29 H29B 329.3 346.2
C6 C8 N33 C10 183.5 180.1
N33 C8 C10 C12 183.0 180.0
N33 C8 C10 C29 4.4 0.1
C34 N33 C8 C42 182.3 239.2
C8 N33 C34 C37 181.1 123.2
C8 N33 C34 H34 301.1 242.7
C8 N33 C34 H34A 61.1 3.8
C8 N33 C42 C39 194.9 213.7
C8 N33 C42 H42 314.9 332.5
C8 N33 C42 H42A 74.9 94.8
C3 C12 C10 N13 180.3 180.0
C12 C10 C8 N33 183.0 180.0
C8 C10 C12 C29 181.5 180.1
C12 C10 C29 H29 270.8 286.2
C12 C10 C29 H29A 30.8 46.2
C12 C10 C29 H29B 150.8 166.3
C10 C12 N13 C15 180.3 180.0
C10 C12 N13 C18 354.1 360.0
C29 C10 C8 N33 4.4 0.1
C8 C10 C29 C12 178.5 179.9
C29 C10 C12 N13 358.9 0.0
H29 C29 C10 H29A 240.0 240.0
H29 C29 C10 H29B 120.0 119.9
H29A C29 C10 H29B 240.0 240.0
C3 C12 N13 C10 179.8 180.0
N13 C12 C10 C29 358.9 0.0
C15 N13 C12 C18 186.2 180.0
C12 N13 C15 O16 181.3 180.0
C12 N13 C15 N17 359.8 359.7
C12 N13 C18 C20 275.9 268.4
C12 N13 C18 C23 209.7 199.8
C12 N13 C18 H18 63.5 54.1
C1 N17 C15 N13 0.2 0.6
C12 N13 C15 C18 173.2 180.0
C15 N13 C18 C20 89.5 88.4
C15 N13 C18 C23 23.3 19.8
C15 N13 C18 H18 237.1 234.1
O16 C15 N13 N17 181.5 180.3
N13 C15 N17 N26 178.9 180.3
C12 N13 C18 C15 186.4 180.0
C18 N13 C15 O16 8.1 360.0
C18 N13 C15 N17 186.7 179.7
C20 C18 N13 C23 66.2 68.6
C20 C18 N13 H18 212.4 214.3
N13 C18 C20 C23 250.9 252.5
N13 C18 C20 H20 10.9 360.0
N13 C18 C20 H20A 130.9 145.1
C23 C18 N13 H18 146.2 145.7
N13 C18 C23 C20 102.1 107.5
N13 C18 C23 H23 222.1 214.9
N13 C18 C23 H23A 342.1 360.0
C1 N17 C15 O16 178.7 180.3
O16 C15 N13 C18 8.1 360.0
N13 C15 O16 N17 178.5 179.7
O16 C15 N17 N26 357.5 0.0
C1 N17 C15 N26 181.2 180.3
N17 C15 N13 C18 186.7 179.7
N13 C15 N17 O16 181.5 180.3
C15 N17 N26 HN26 1.2 180.3
C15 N17 N26 HN2A 121.2 304.2
C1 N17 N26 C15 178.8 179.7
HN26 N26 N17 HN2A 240.0 236.1
N13 C18 C20 H18 128.2 145.0
C23 C18 C20 H18 237.3 252.5
C20 C18 C23 C20 -0.0 -0.0
C20 C18 C23 H23 120.0 107.5
C20 C18 C23 H23A 240.0 252.5
C23 C20 C18 H20 240.0 252.5
C23 C20 C18 H20A 120.0 107.4
C18 C20 C23 H23 240.0 252.5
C18 C20 C23 H23A 120.0 107.5
H20 C20 C18 H20A 240.0 214.9
N13 C18 C23 H18 229.9 215.0
C20 C18 C23 H18 127.8 107.5
C23 C18 C20 C23 360.0 -0.0
C23 C18 C20 H20 120.0 107.5
C23 C18 C20 H20A 240.0 252.6
C18 C23 C20 H20 240.0 252.5
C18 C23 C20 H20A 120.0 107.5
C20 C23 C18 H23 240.0 252.5
C20 C23 C18 H23A 120.0 107.5
H23 C23 C18 H23A 240.0 214.9
N13 C18 H18 C20 226.5 214.3
N13 C18 H18 C23 137.0 145.7
C20 C18 H18 C23 270.4 291.4
H18 C18 C20 C23 122.7 107.5
H18 C18 C20 H20 242.7 214.9
H18 C18 C20 H20A 2.7 0.0
H18 C18 C23 C20 232.2 252.5
H18 C18 C23 H23 352.2 360.0
H18 C18 C23 H23A 112.2 145.0
C23 C20 C18 C23 360.0 -0.0
C23 C20 C18 H18 122.7 107.5
C18 C20 C23 H20 120.0 107.5
C18 C20 C23 H20A 240.0 252.5
C20 C23 C18 H18 232.2 252.5
C18 C23 C20 H23 120.0 107.5
C18 C23 C20 H23A 240.0 252.5
H20 C20 C23 H20A 120.0 144.9
H23 C23 C20 H23A 120.0 145.0
H20 C20 C18 C23 120.0 107.5
H20 C20 C18 H18 242.7 214.9
C18 C20 H20 C23 276.9 291.4
C18 C20 H20 H20A 138.4 145.8
C23 C20 H20 H20A 221.6 214.4
H20 C20 C23 H23 120.0 145.0
H20 C20 C23 H23A 359.9 360.0
H20A C20 C18 C23 240.0 252.6
H20A C20 C18 H18 2.7 0.0
C18 C20 H20A C23 83.1 68.6
C18 C20 H20A H20 221.5 214.2
C23 C20 H20A H20 138.4 145.6
H20A C20 C23 H23 0.0 0.0
H20A C20 C23 H23A 240.0 215.0
H23 C23 C18 H18 352.2 360.0
C18 C23 H23 C20 277.0 291.4
C18 C23 H23 H23A 138.5 145.7
H23 C23 C20 H20 120.0 145.0
H23 C23 C20 H20A 0.0 0.0
C20 C23 H23 H23A 221.5 214.3
H23A C23 C18 H18 112.2 145.0
C18 C23 H23A C20 83.0 68.6
C18 C23 H23A H23 221.5 214.3
H23A C23 C20 H20 359.9 360.0
H23A C23 C20 H20A 240.0 215.0
C20 C23 H23A H23 138.5 145.7
N17 N26 HN26 HN2A 120.0 123.9
N17 N26 HN2A HN26 240.0 236.1
C10 C29 H29 H29A 120.0 120.0
C10 C29 H29 H29B 240.0 240.0
H29A C29 H29 H29B 120.0 120.0
C10 C29 H29A H29 240.0 240.0
C10 C29 H29A H29B 120.0 120.0
H29 C29 H29A H29B 240.0 240.1
C10 C29 H29B H29 120.0 120.0
C10 C29 H29B H29A 240.0 240.0
H29 C29 H29B H29A 120.0 120.0
C8 N33 C34 C42 178.1 122.2
C34 N33 C42 C39 12.9 335.9
C34 N33 C42 H42 132.9 94.8
C34 N33 C42 H42A 252.9 217.0
C37 C34 N33 H34 240.0 240.6
C37 C34 N33 H34A 120.0 119.4
N33 C34 C37 C39 340.8 22.3
N33 C34 C37 C45 105.4 140.7
N33 C34 C37 H37 222.9 263.8
H34 C34 N33 H34A 240.0 238.9
C8 N33 C42 C34 182.0 237.8
C42 N33 C34 C37 3.0 1.0
C42 N33 C34 H34 123.0 120.4
C42 N33 C34 H34A 243.0 241.6
C37 C39 C42 N33 335.5 37.1
N33 C42 C39 H39 215.5 279.0
N33 C42 C39 H39A 95.5 155.2
C39 C42 N33 H42 240.0 241.1
C39 C42 N33 H42A 120.0 118.9
H42 C42 N33 H42A 240.0 237.8
C37 C34 N33 C42 3.0 1.0
N33 C34 C37 H34 120.0 119.4
N33 C34 C37 H34A 240.0 240.6
H34 C34 C37 H34A 120.0 121.2
C39 C37 C34 C45 235.4 241.6
C39 C37 C34 H37 117.9 118.4
C34 C37 C39 C42 27.9 324.4
C34 C37 C39 H39 147.9 82.4
C34 C37 C39 H39A 267.9 206.3
C45 C37 C34 H37 242.5 236.8
C34 C37 C45 C47 174.4 180.0
C34 C37 C45 N51 54.8 60.0
C34 C37 C45 H45 294.2 299.9
H34 C34 N33 C42 123.0 120.4
N33 C34 H34 C37 243.5 242.2
N33 C34 H34 H34A 121.7 121.1
C37 C34 H34 H34A 238.2 238.9
H34 C34 C37 C39 220.8 262.9
H34 C34 C37 C45 345.4 21.3
H34 C34 C37 H37 102.9 144.5
H34A C34 N33 C42 243.0 241.6
N33 C34 H34A C37 116.5 117.8
N33 C34 H34A H34 238.3 239.0
C37 C34 H34A H34 121.8 121.1
H34A C34 C37 C39 100.8 141.7
H34A C34 C37 C45 225.3 260.1
H34A C34 C37 H37 342.8 23.3
N33 C42 C39 C37 335.5 37.1
C39 C37 C34 H34 220.8 262.9
C39 C37 C34 H34A 100.8 141.7
C34 C37 C39 C45 122.4 118.4
C34 C37 C39 H37 239.7 241.6
C45 C37 C39 H37 117.3 123.2
C39 C37 C45 C47 296.5 293.6
C39 C37 C45 N51 176.9 173.6
C39 C37 C45 H45 56.3 53.6
C42 C39 C37 H39 240.0 242.0
C42 C39 C37 H39A 120.0 118.1
C37 C39 C42 H42 215.5 278.2
C37 C39 C42 H42A 95.5 155.9
H39 C39 C37 H39A 240.0 236.1
C45 C37 C34 H34 345.4 21.3
C45 C37 C34 H34A 225.3 260.1
C34 C37 C45 C39 237.9 246.4
C34 C37 C45 H37 120.2 123.2
C39 C37 C45 H37 242.3 236.8
C45 C37 C39 C42 265.4 206.0
C45 C37 C39 H39 25.4 324.0
C45 C37 C39 H39A 145.5 87.9
C47 C45 C37 N51 119.6 120.0
C47 C45 C37 H45 240.2 240.0
C37 C45 C47 H47 180.0 60.0
C37 C45 C47 H47A 300.0 179.9
C37 C45 C47 H47B 60.0 300.0
N51 C45 C37 H45 120.6 120.1
C37 C45 N51 HN51 180.0 60.0
C37 C45 N51 HN5A 300.0 183.9
H37 C37 C34 H34 102.9 144.5
H37 C37 C34 H34A 342.8 23.3
C34 C37 H37 C39 119.0 113.7
C34 C37 H37 C45 240.6 236.8
C39 C37 H37 C45 121.6 123.2
H37 C37 C39 C42 148.1 82.8
H37 C37 C39 H39 268.1 200.8
H37 C37 C39 H39A 28.2 324.7
H37 C37 C45 C47 54.2 56.8
H37 C37 C45 N51 294.6 296.8
H37 C37 C45 H45 174.0 176.8
N33 C42 C39 H42 120.0 118.9
N33 C42 C39 H42A 240.0 241.1
C42 C39 C37 C45 265.4 206.0
C42 C39 C37 H37 148.1 82.8
C37 C39 C42 H39 120.0 118.1
C37 C39 C42 H39A 240.0 241.9
H39 C39 C42 H39A 120.0 123.8
H42 C42 C39 H42A 120.0 122.3
H39 C39 C37 C45 25.4 324.0
H39 C39 C37 H37 268.1 200.8
C37 C39 H39 C42 242.5 247.8
C37 C39 H39 H39A 121.2 124.0
C42 C39 H39 H39A 238.8 236.2
H39 C39 C42 H42 95.5 160.1
H39 C39 C42 H42A 335.5 37.8
H39A C39 C37 C45 145.5 87.9
H39A C39 C37 H37 28.2 324.7
C37 C39 H39A C42 117.5 112.3
C37 C39 H39A H39 238.7 236.1
C42 C39 H39A H39 121.2 123.8
H39A C39 C42 H42 335.5 36.3
H39A C39 C42 H42A 215.5 274.1
N33 C42 H42 C39 245.0 244.6
N33 C42 H42 H42A 122.5 122.3
H42 C42 C39 H39 95.5 160.1
H42 C42 C39 H39A 335.5 36.3
C39 C42 H42 H42A 237.5 237.7
N33 C42 H42A C39 115.0 115.4
N33 C42 H42A H42 237.5 237.7
H42A C42 C39 H39 335.5 37.8
H42A C42 C39 H39A 215.5 274.1
C39 C42 H42A H42 122.5 122.3
C47 C45 C37 H37 54.2 56.8
C37 C45 C47 N51 240.3 240.0
C37 C45 C47 H45 119.6 120.0
N51 C45 C47 H45 239.4 240.0
C47 C45 N51 HN51 59.3 300.0
C47 C45 N51 HN5A 179.3 64.0
H47 C47 C45 H47A 240.0 240.1
H47 C47 C45 H47B 120.0 120.0
H47A C47 C45 H47B 240.0 239.9
N51 C45 C37 H37 294.6 296.8
C37 C45 N51 C47 120.7 120.0
C37 C45 N51 H45 240.4 240.0
C47 C45 N51 H45 119.7 120.0
N51 C45 C47 H47 299.7 180.0
N51 C45 C47 H47A 59.7 299.9
N51 C45 C47 H47B 179.8 60.0
HN51 N51 C45 HN5A 240.0 236.0
H45 C45 C37 H37 174.0 176.8
C37 C45 H45 C47 239.3 240.0
C37 C45 H45 N51 119.7 120.0
C47 C45 H45 N51 240.4 240.0
H45 C45 C47 H47 60.4 300.0
H45 C45 C47 H47A 180.4 59.9
H45 C45 C47 H47B 300.4 180.0
H45 C45 N51 HN51 299.6 180.0
H45 C45 N51 HN5A 59.6 304.0
H47 C47 C45 N51 299.7 180.0
H47 C47 C45 H45 60.4 300.0
C45 C47 H47 H47A 120.0 120.0
C45 C47 H47 H47B 240.0 240.0
H47A C47 H47 H47B 120.0 120.0
H47A C47 C45 N51 59.7 299.9
H47A C47 C45 H45 180.4 59.9
C45 C47 H47A H47 240.0 240.1
C45 C47 H47A H47B 120.0 120.1
H47 C47 H47A H47B 240.0 240.0
H47B C47 C45 N51 179.8 60.0
H47B C47 C45 H45 300.4 180.0
C45 C47 H47B H47 120.0 120.0
C45 C47 H47B H47A 240.0 239.9
H47 C47 H47B H47A 120.0 120.0
HN51 N51 C45 H45 299.6 180.0
C45 N51 HN51 HN5A 120.0 123.9
HN5A N51 C45 H45 59.6 304.0
C45 N51 HN5A HN51 240.0 236.0