PDB Chemical Component PDG

Ideal Model

Chemical Description

Name N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACID
Synonyms N-PYRIDOXYL-D-GLUTAMIC ACID-5'-MONOPHOSPHATE
Formula C13 H19 N2 O9 P
Formal charge 0
Molecular weight 378.272 g/mol
Component type NON-POLYMER

Chemical features

Atom count 44
Chiral atom count 1
Chiral atoms CAA
Bond count 44
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-glutamic acid
Systematic name (OpenEye OEToolkits) (2R)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanedioic acid

Chemical Descriptors

Stereo SMILES (CACTVS) Cc1ncc(CO[P](O)(O)=O)c(CN[C@H](CCC(O)=O)C(O)=O)c1O
SMILES (CACTVS) Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CCC(O)=O)C(O)=O)c1O
Stereo SMILES (OpenEye) Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H](CCC(=O)O)C(=O)O)O
InChI descriptor InChI=1S/C13H19N2O9P/c1-7-12(18)9(8(4-14-7)6-24-25(21,22)23)5-15-10(13(19)20)2-3-11(16)17/h4,10,15,18H,2-3,5-6H2,1H3,(H,16,17)(H,19,20)(H2,21,22,23)/t10-/m1/s1
InChIKey descriptor JMRKOGDJNHPMHS-SNVBAGLBSA-N

Status Information

Last modified 2020-06-17
Created 2005-04-25
Release status REL
Model PDB code 1X2A
Processing site RCSB