PDB Chemical Component PDG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PDG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.391	1.318
N1	C6	1.369	1.319
C2	C2A	1.523	1.507
C2	C3	1.470	1.388
C2A	H2A1	1.115	1.090
C2A	H2A2	1.115	1.091
C2A	H2A3	1.115	1.091
C3	O3	1.353	1.358
C3	C4	1.437	1.392
O3	HO3	0.950	0.967
C4	C4A	1.550	1.507
C4	C5	1.453	1.385
C4A	NA	1.523	1.468
C4A	H4A1	1.114	1.089
C4A	H4A2	1.116	1.091
C5	C6	1.397	1.383
C5	C5A	1.525	1.507
C6	H6	1.103	1.079
C5A	OP4	1.375	1.429
C5A	H5A1	1.115	1.090
C5A	H5A2	1.115	1.090
OP4	P	1.605	1.610
P	OP1	1.437	1.480
P	OP2	1.517	1.611
P	OP3	1.520	1.609
OP2	HP2	0.950	0.967
OP3	HP3	0.950	0.967
NA	CAA	1.514	1.469
NA	HNA	1.020	1.009
CAA	CBA	1.545	1.530
CAA	CA	1.537	1.507
CAA	HAA	1.115	1.090
CBA	CGA	1.544	1.530
CBA	HBA1	1.114	1.090
CBA	HBA2	1.115	1.090
CGA	CDA	1.539	1.507
CGA	HGA1	1.114	1.090
CGA	HGA2	1.115	1.090
CDA	OE1	1.208	1.343
CDA	OE2	1.242	1.208
OE1	HE1	0.950	0.967
CA	OA	1.357	1.208
CA	OXT	1.317	1.342
OXT	HXT	0.949	0.967

Bond Angles for PDG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	122.6	121.8
N1	C2	C2A	109.0	119.6
N1	C2	C3	117.9	120.7
N1	C6	C5	118.3	120.9
N1	C6	H6	119.9	119.6
C2A	C2	C3	133.1	119.6
C2	C2A	H2A1	108.9	109.5
C2	C2A	H2A2	112.4	109.5
C2	C2A	H2A3	112.4	109.5
C2	C3	O3	110.8	120.5
C2	C3	C4	123.2	119.0
H2A1	C2A	H2A2	112.4	109.5
H2A1	C2A	H2A3	112.4	109.4
H2A2	C2A	H2A3	98.1	109.5
O3	C3	C4	126.0	120.5
C3	O3	HO3	110.7	106.8
C3	C4	C4A	123.8	120.7
C3	C4	C5	111.6	118.4
C4A	C4	C5	124.6	120.8
C4	C4A	NA	106.3	109.5
C4	C4A	H4A1	113.4	109.5
C4	C4A	H4A2	113.4	109.4
C4	C5	C6	126.4	119.2
C4	C5	C5A	122.7	120.4
NA	C4A	H4A1	113.4	109.5
NA	C4A	H4A2	113.4	109.5
C4A	NA	CAA	112.2	106.7
C4A	NA	HNA	111.2	106.8
H4A1	C4A	H4A2	97.0	109.5
C6	C5	C5A	110.9	120.3
C5	C6	H6	121.8	119.6
C5	C5A	OP4	117.8	109.5
C5	C5A	H5A1	109.2	109.4
C5	C5A	H5A2	109.2	109.5
OP4	C5A	H5A1	109.2	109.4
OP4	C5A	H5A2	109.2	109.5
C5A	OP4	P	124.2	106.8
H5A1	C5A	H5A2	100.9	109.5
OP4	P	OP1	112.1	109.5
OP4	P	OP2	102.8	109.5
OP4	P	OP3	105.3	109.5
OP1	P	OP2	119.7	109.4
OP1	P	OP3	105.1	109.5
OP2	P	OP3	111.1	109.5
P	OP2	HP2	102.8	106.8
P	OP3	HP3	105.4	106.8
CAA	NA	HNA	111.2	106.6
NA	CAA	CBA	113.3	109.5
NA	CAA	CA	107.8	109.5
NA	CAA	HAA	108.8	109.5
CBA	CAA	CA	111.7	109.5
CBA	CAA	HAA	104.6	109.4
CAA	CBA	CGA	116.2	109.5
CAA	CBA	HBA1	109.8	109.5
CAA	CBA	HBA2	109.8	109.5
CA	CAA	HAA	110.5	109.5
CAA	CA	OA	109.3	120.0
CAA	CA	OXT	125.9	120.0
CGA	CBA	HBA1	109.8	109.5
CGA	CBA	HBA2	109.7	109.5
CBA	CGA	CDA	112.7	109.5
CBA	CGA	HGA1	111.1	109.5
CBA	CGA	HGA2	111.0	109.5
HBA1	CBA	HBA2	100.5	109.4
CDA	CGA	HGA1	111.0	109.4
CDA	CGA	HGA2	111.0	109.5
CGA	CDA	OE1	115.9	120.0
CGA	CDA	OE2	114.3	120.0
HGA1	CGA	HGA2	99.3	109.5
OE1	CDA	OE2	129.8	120.0
CDA	OE1	HE1	115.8	120.0
OA	CA	OXT	124.9	120.0
CA	OXT	HXT	125.9	120.1

Torsion Angles for PDG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	0.1	0.1
C2	N1	C6	H6	180.1	180.0
C2A	C2	N1	C3	180.0	179.8
N1	C2	C2A	H2A1	180.0	89.9
N1	C2	C2A	H2A2	305.2	209.9
N1	C2	C2A	H2A3	54.7	329.9
N1	C2	C3	O3	180.0	180.0
N1	C2	C3	C4	360.0	359.5
C6	N1	C2	C2A	180.0	180.0
C6	N1	C2	C3	359.9	0.2
C4	C5	C6	N1	360.0	360.0
N1	C6	C5	C5A	179.9	179.9
C5	C6	N1	H6	180.0	180.1
C2A	C2	N1	C6	180.0	180.0
N1	C2	C2A	C3	179.9	180.2
C2A	C2	C3	O3	360.0	0.2
C2A	C2	C3	C4	179.9	179.7
H2A1	C2A	C2	H2A2	234.8	240.0
H2A1	C2A	C2	H2A3	125.3	120.0
H2A2	C2A	C2	H2A3	250.5	240.0
C3	C2	N1	C6	359.9	0.2
N1	C2	C3	C2A	180.1	179.8
C3	C2	C2A	H2A1	0.1	269.7
C3	C2	C2A	H2A2	125.3	29.7
C3	C2	C2A	H2A3	234.8	149.7
O3	C3	C2	C4	180.0	180.5
C2	C3	O3	HO3	180.0	269.5
C2	C3	C4	C4A	180.3	180.2
C2	C3	C4	C5	0.0	0.5
H2A1	C2A	C2	C3	0.1	269.7
C2	C2A	H2A1	H2A2	125.2	120.0
C2	C2A	H2A1	H2A3	234.8	240.0
H2A2	C2A	H2A1	H2A3	109.6	120.0
H2A2	C2A	C2	C3	125.3	29.7
C2	C2A	H2A2	H2A1	236.7	240.0
C2	C2A	H2A2	H2A3	118.3	120.0
H2A1	C2A	H2A2	H2A3	241.6	240.0
H2A3	C2A	C2	C3	234.8	149.7
C2	C2A	H2A3	H2A1	123.3	120.0
C2	C2A	H2A3	H2A2	241.7	240.0
H2A1	C2A	H2A3	H2A2	118.4	120.0
C2	C3	O3	C4	180.0	179.5
O3	C3	C4	C4A	0.3	359.7
O3	C3	C4	C5	180.0	180.0
C2	C3	C4	O3	180.0	180.5
C4	C3	O3	HO3	0.0	90.0
C4A	C4	C3	C5	180.3	179.7
C3	C4	C4A	NA	334.5	270.2
C3	C4	C4A	H4A1	99.8	30.3
C3	C4	C4A	H4A2	209.2	150.3
C3	C4	C5	C6	360.0	359.7
C3	C4	C5	C5A	180.1	179.8
HO3	O3	C3	C4	0.0	90.0
C3	C4	C4A	C5	179.7	180.3
C4A	C4	C5	C6	179.7	180.0
C4A	C4	C5	C5A	359.8	0.1
NA	C4A	C4	H4A1	234.7	240.0
NA	C4A	C4	H4A2	125.2	120.0
C4	C4A	NA	CAA	245.9	180.0
C4	C4A	NA	HNA	120.7	293.8
H4A1	C4A	C4	H4A2	250.5	240.0
N1	C6	C5	C4	360.0	360.0
C3	C4	C5	C4A	180.3	179.7
C5	C4	C4A	NA	154.8	89.9
C5	C4	C4A	H4A1	280.1	210.0
C5	C4	C4A	H4A2	29.5	329.9
C6	C5	C4	C5A	179.9	179.9
C4	C5	C6	H6	179.9	180.1
C4	C5	C5A	OP4	46.7	180.0
C4	C5	C5A	H5A1	172.0	299.9
C4	C5	C5A	H5A2	281.4	59.9
NA	C4A	C4	C5	154.8	89.9
C4	C4A	NA	H4A1	125.3	120.1
C4	C4A	NA	H4A2	234.7	240.0
H4A1	C4A	NA	H4A2	109.4	120.0
CAA	NA	C4A	HNA	125.2	246.3
C4A	NA	CAA	CBA	303.1	205.1
C4A	NA	CAA	CA	178.9	85.0
C4A	NA	CAA	HAA	59.0	325.0
H4A1	C4A	C4	C5	280.1	210.0
C4	C4A	H4A1	NA	238.6	240.0
C4	C4A	H4A1	H4A2	119.3	120.0
NA	C4A	H4A1	H4A2	240.7	240.0
H4A1	C4A	NA	CAA	120.6	60.0
H4A1	C4A	NA	HNA	355.4	173.7
H4A2	C4A	C4	C5	29.5	329.9
C4	C4A	H4A2	NA	121.3	120.0
C4	C4A	H4A2	H4A1	240.6	240.0
NA	C4A	H4A2	H4A1	119.3	120.0
H4A2	C4A	NA	CAA	11.2	300.0
H4A2	C4A	NA	HNA	246.0	53.7
N1	C6	C5	H6	180.0	179.9
C4	C5	C6	C5A	180.1	180.1
C6	C5	C5A	OP4	226.8	0.1
C6	C5	C5A	H5A1	352.1	120.0
C6	C5	C5A	H5A2	101.5	240.0
C4	C5	C5A	C6	179.9	179.9
C5A	C5	C6	H6	359.9	360.0
OP4	C5A	C5	H5A1	234.7	240.1
OP4	C5A	C5	H5A2	125.3	120.1
C5	C5A	OP4	P	172.6	180.0
H5A1	C5A	C5	H5A2	250.6	240.0
N1	C6	H6	C5	180.0	180.1
H6	C6	C5	C5A	359.9	360.0
C5	C5A	OP4	H5A1	125.3	119.9
C5	C5A	OP4	H5A2	234.7	239.9
H5A1	C5A	OP4	H5A2	109.4	120.0
C5A	OP4	P	OP1	242.7	55.0
C5A	OP4	P	OP2	112.8	174.9
C5A	OP4	P	OP3	356.4	294.9
C5	C5A	H5A1	OP4	229.9	240.0
C5	C5A	H5A1	H5A2	115.0	120.0
OP4	C5A	H5A1	H5A2	245.1	240.0
H5A1	C5A	OP4	P	47.3	60.0
C5	C5A	H5A2	OP4	130.2	120.1
C5	C5A	H5A2	H5A1	245.1	240.0
OP4	C5A	H5A2	H5A1	114.9	120.0
H5A2	C5A	OP4	P	297.9	300.1
P	OP4	C5A	H5A1	47.3	60.0
P	OP4	C5A	H5A2	297.9	300.1
OP1	P	OP4	OP2	129.8	240.1
OP1	P	OP4	OP3	246.3	120.1
OP2	P	OP4	OP3	116.4	240.0
OP4	P	OP2	HP2	180.0	180.0
OP4	P	OP3	HP3	180.0	300.0
OP4	P	OP1	OP2	239.6	120.0
OP4	P	OP1	OP3	113.9	240.0
OP2	P	OP1	OP3	234.3	120.0
OP1	P	OP2	HP2	55.1	299.9
OP1	P	OP3	HP3	298.5	180.0
OP4	P	OP2	OP1	125.0	240.0
OP4	P	OP2	OP3	247.8	120.0
OP1	P	OP2	OP3	122.8	240.0
OP2	P	OP3	HP3	69.4	60.0
OP4	P	OP3	OP1	241.5	120.0
OP4	P	OP3	OP2	110.6	240.0
OP1	P	OP3	OP2	229.1	120.0
OP3	P	OP2	HP2	292.3	60.0
HP2	OP2	P	OP3	292.3	60.0
CAA	NA	C4A	H4A1	120.6	60.0
CAA	NA	C4A	H4A2	11.2	300.0
C4A	NA	CAA	HNA	234.8	113.8
CBA	CAA	NA	CA	124.2	120.1
CBA	CAA	NA	HAA	244.1	240.1
NA	CAA	CBA	CGA	163.7	65.0
NA	CAA	CBA	HBA1	288.9	185.0
NA	CAA	CBA	HBA2	38.5	305.0
CA	CAA	NA	HAA	119.9	120.0
NA	CAA	CA	OA	300.1	0.1
NA	CAA	CA	OXT	119.9	180.0
HNA	NA	C4A	H4A1	355.4	173.7
HNA	NA	C4A	H4A2	246.0	53.7
C4A	NA	HNA	CAA	125.8	246.2
HNA	NA	CAA	CBA	68.3	91.2
HNA	NA	CAA	CA	304.1	331.2
HNA	NA	CAA	HAA	184.3	211.2
CBA	CAA	NA	HNA	68.3	91.2
NA	CAA	CBA	CA	237.9	239.9
NA	CAA	CBA	HAA	118.4	120.0
CA	CAA	CBA	HAA	240.5	240.0
CBA	CAA	CA	OA	174.9	240.0
CBA	CAA	CA	OXT	354.7	59.9
CGA	CBA	CAA	HBA1	234.8	240.0
CGA	CBA	CAA	HBA2	125.2	120.0
CAA	CBA	CGA	CDA	312.1	180.0
CAA	CBA	CGA	HGA1	77.4	300.0
CAA	CBA	CGA	HGA2	186.8	60.0
HBA1	CBA	CAA	HBA2	250.5	240.0
CA	CAA	NA	HNA	304.1	331.2
NA	CAA	CA	CBA	125.2	120.1
NA	CAA	CA	HAA	241.2	240.0
CBA	CAA	CA	HAA	116.0	119.9
CA	CAA	CBA	CGA	285.8	185.0
CA	CAA	CBA	HBA1	51.0	305.1
CA	CAA	CBA	HBA2	160.5	65.0
OA	CA	CAA	OXT	180.2	180.1
CAA	CA	OXT	HXT	180.0	180.1
HAA	CAA	NA	HNA	184.3	211.2
NA	CAA	HAA	CBA	238.6	240.0
NA	CAA	HAA	CA	118.2	120.0
CBA	CAA	HAA	CA	239.6	240.0
HAA	CAA	CBA	CGA	45.3	305.0
HAA	CAA	CBA	HBA1	170.5	65.0
HAA	CAA	CBA	HBA2	280.1	185.0
HAA	CAA	CA	OA	58.9	120.1
HAA	CAA	CA	OXT	238.7	300.0
CGA	CBA	CAA	CA	285.8	185.0
CGA	CBA	CAA	HAA	45.3	305.0
CAA	CBA	CGA	HBA1	125.3	120.0
CAA	CBA	CGA	HBA2	234.8	240.0
HBA1	CBA	CGA	HBA2	109.5	119.9
CDA	CGA	CBA	HGA1	234.7	240.1
CDA	CGA	CBA	HGA2	125.3	120.0
CBA	CGA	CDA	OE1	99.1	180.0
CBA	CGA	CDA	OE2	278.9	360.0
HGA1	CGA	CBA	HGA2	250.6	240.0
HBA1	CBA	CAA	CA	51.0	305.1
HBA1	CBA	CAA	HAA	170.5	65.0
CAA	CBA	HBA1	CGA	231.2	240.0
CAA	CBA	HBA1	HBA2	115.6	120.0
CGA	CBA	HBA1	HBA2	244.5	240.0
HBA1	CBA	CGA	CDA	186.9	60.0
HBA1	CBA	CGA	HGA1	312.1	179.9
HBA1	CBA	CGA	HGA2	61.6	300.0
HBA2	CBA	CAA	CA	160.5	65.0
HBA2	CBA	CAA	HAA	280.1	185.0
CAA	CBA	HBA2	CGA	128.8	120.0
CAA	CBA	HBA2	HBA1	244.4	240.0
CGA	CBA	HBA2	HBA1	115.6	120.0
HBA2	CBA	CGA	CDA	77.3	300.1
HBA2	CBA	CGA	HGA1	202.6	60.0
HBA2	CBA	CGA	HGA2	312.1	180.0
CDA	CGA	CBA	HBA1	186.9	60.0
CDA	CGA	CBA	HBA2	77.3	300.1
CBA	CGA	CDA	HGA1	125.3	120.0
CBA	CGA	CDA	HGA2	234.7	240.0
HGA1	CGA	CDA	HGA2	109.4	120.0
OE1	CDA	CGA	OE2	180.2	180.1
CGA	CDA	OE1	HE1	180.0	180.0
HGA1	CGA	CBA	HBA1	312.1	179.9
HGA1	CGA	CBA	HBA2	202.6	60.0
CBA	CGA	HGA1	CDA	233.8	240.0
CBA	CGA	HGA1	HGA2	116.9	120.0
CDA	CGA	HGA1	HGA2	243.2	240.0
HGA1	CGA	CDA	OE1	333.8	60.1
HGA1	CGA	CDA	OE2	153.6	240.0
HGA2	CGA	CBA	HBA1	61.6	300.0
HGA2	CGA	CBA	HBA2	312.1	180.0
CBA	CGA	HGA2	CDA	126.2	120.0
CBA	CGA	HGA2	HGA1	243.1	240.0
CDA	CGA	HGA2	HGA1	116.8	120.0
HGA2	CGA	CDA	OE1	224.4	300.1
HGA2	CGA	CDA	OE2	44.2	120.0
OE1	CDA	CGA	HGA1	333.8	60.1
OE1	CDA	CGA	HGA2	224.4	300.1
CGA	CDA	OE1	OE2	179.8	179.9
OE2	CDA	CGA	HGA1	153.6	240.0
OE2	CDA	CGA	HGA2	44.2	120.0
CGA	CDA	OE2	OE1	180.2	180.1
OE2	CDA	OE1	HE1	0.2	0.0
HE1	OE1	CDA	OE2	0.2	0.0
OA	CA	CAA	HAA	58.9	120.1
CAA	CA	OA	OXT	179.8	179.9
OA	CA	OXT	HXT	359.7	360.0
OXT	CA	CAA	HAA	238.7	300.0
CAA	CA	OXT	OA	180.2	180.1