PDB Chemical Component PDC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PDC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.394	1.323
N1	C6	1.401	1.323
C2	C3	1.393	1.396
C2	C7	1.369	1.481
C3	C4	1.399	1.386
C3	H3	1.104	1.080
C4	C5	1.408	1.386
C4	H4	1.103	1.080
C5	C6	1.411	1.396
C5	H5	1.102	1.080
C6	C8	1.400	1.481
C7	O1	1.329	1.213
C7	O2	1.356	1.346
O2	HO2	0.950	0.967
C8	O3	1.359	1.213
C8	O4	1.321	1.346
O4	HO4	0.950	0.967

Bond Angles for PDC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	120.5	121.6
N1	C2	C3	120.5	120.7
N1	C2	C7	117.6	119.7
N1	C6	C5	119.1	120.7
N1	C6	C8	117.8	119.7
C3	C2	C7	122.0	119.6
C2	C3	C4	120.0	119.3
C2	C3	H3	119.8	120.4
C2	C7	O1	119.2	120.1
C2	C7	O2	121.5	120.0
C4	C3	H3	120.2	120.4
C3	C4	C5	119.8	118.5
C3	C4	H4	119.8	120.7
C5	C4	H4	120.4	120.7
C4	C5	C6	120.2	119.3
C4	C5	H5	119.8	120.4
C6	C5	H5	120.1	120.4
C5	C6	C8	123.1	119.6
C6	C8	O3	121.0	120.1
C6	C8	O4	120.0	120.0
O1	C7	O2	119.2	120.0
C7	O2	HO2	121.4	120.0
O3	C8	O4	118.6	120.0
C8	O4	HO4	120.0	120.0

Torsion Angles for PDC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C6	C5	1.6	0.4
C2	N1	C6	C8	182.0	180.2
C3	C2	N1	C7	181.8	179.8
N1	C2	C3	C4	0.7	0.2
N1	C2	C3	H3	180.7	180.1
N1	C2	C7	O1	187.7	179.8
N1	C2	C7	O2	3.2	359.8
C6	N1	C2	C3	358.0	359.6
C6	N1	C2	C7	176.2	179.8
C4	C5	C6	N1	0.1	359.8
N1	C6	C5	H5	180.1	179.8
C5	C6	N1	C8	179.6	180.2
N1	C6	C8	O3	165.9	180.2
N1	C6	C8	O4	352.4	0.2
C3	C2	N1	C6	358.0	359.6
N1	C2	C3	C7	178.2	180.2
C3	C2	C7	O1	5.9	-0.0
C3	C2	C7	O2	181.4	180.0
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	C5	1.0	-0.0
C2	C3	C4	H4	180.9	180.0
C7	C2	N1	C6	176.2	179.8
N1	C2	C7	C3	181.8	179.8
C7	C2	C3	C4	182.6	180.0
C7	C2	C3	H3	2.5	359.9
O1	C7	C2	O2	184.6	180.0
C2	C7	O2	HO2	180.0	180.0
C4	C3	C2	C7	182.6	180.0
C2	C3	C4	H3	180.0	179.9
C5	C4	C3	H4	180.0	180.0
C3	C4	C5	C6	358.6	-0.0
C3	C4	C5	H5	178.6	180.0
H3	C3	C2	C7	2.5	359.9
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	C5	181.0	180.1
H3	C3	C4	H4	1.0	0.1
N1	C6	C5	C4	0.1	359.8
C5	C4	C3	H3	181.0	180.1
C3	C4	C5	H4	180.0	180.0
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C8	179.6	180.0
H4	C4	C3	H3	1.0	0.1
C3	C4	H4	C5	180.0	180.0
H4	C4	C5	C6	178.7	180.0
H4	C4	C5	H5	358.6	-0.0
N1	C6	C5	C8	180.4	179.8
C6	C5	C4	H4	178.7	180.0
C4	C5	C6	H5	180.0	180.0
C5	C6	C8	O3	346.3	-0.0
C5	C6	C8	O4	172.8	180.0
H5	C5	C4	H4	358.6	360.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C8	359.7	-0.0
N1	C6	C8	C5	179.6	180.2
C8	C6	C5	H5	359.7	-0.0
O3	C8	C6	O4	173.5	180.0
C6	C8	O4	HO4	179.9	180.0
C2	C7	O1	O2	175.5	180.0
O1	C7	O2	HO2	355.5	-0.0
C2	C7	O2	O1	184.6	180.0
C6	C8	O3	O4	186.4	180.0
O3	C8	O4	HO4	6.3	-0.0
C6	C8	O4	O3	173.7	180.0