PDB Chemical Component PD2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PD2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O42 C41 1.256 1.214
C41 O41 1.254 1.346
C41 C4 1.508 1.480
O41 H41 0.950 0.968
C4 C5 1.392 1.399
C4 C3 1.397 1.397
C5 C6 1.397 1.385
C5 H5 1.080 1.080
C6 N1 1.330 1.314
C6 H6 1.080 1.080
C3 C2 1.402 1.393
C3 H3 1.080 1.080
C2 N1 1.351 1.327
C2 C21 1.507 1.481
C21 O21 1.260 1.214
C21 O22 1.251 1.346
O22 H22 0.950 0.967

Bond Angles for PD2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O42 C41 O41 121.9 120.0
O42 C41 C4 120.0 120.0
O41 C41 C4 118.1 120.0
C41 O41 H41 109.5 120.0
C41 C4 C5 119.9 120.9
C41 C4 C3 121.5 120.9
C5 C4 C3 118.6 118.2
C4 C5 C6 120.1 119.2
C4 C5 H5 120.0 120.4
C4 C3 C2 119.0 118.9
C4 C3 H3 120.5 120.6
C6 C5 H5 119.9 120.5
C5 C6 N1 120.1 121.1
C5 C6 H6 120.0 119.5
N1 C6 H6 119.9 119.4
C6 N1 C2 121.8 122.0
C2 C3 H3 120.5 120.5
C3 C2 N1 120.4 120.7
C3 C2 C21 121.2 119.6
N1 C2 C21 118.4 119.7
C2 C21 O21 119.3 120.0
C2 C21 O22 117.8 120.0
O21 C21 O22 122.8 120.0
C21 O22 H22 109.5 120.0

Torsion Angles for PD2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O41 C41 O42 C4 178.9 180.0
O42 C41 O41 H41 0.0 -0.0
O42 C41 C4 C5 202.2 180.0
O42 C41 C4 C3 23.3 359.8
O42 C41 O41 C4 181.1 180.0
O41 C41 C4 C5 23.3 360.0
O41 C41 C4 C3 204.3 179.7
O42 C41 C4 O41 178.9 180.0
C4 C41 O41 H41 178.9 180.0
C5 C4 C41 C3 179.0 180.2
C41 C4 C5 C6 181.0 180.0
C41 C4 C5 H5 1.0 0.0
C41 C4 C3 C2 180.0 179.7
C41 C4 C3 H3 360.0 0.2
H41 O41 C41 C4 178.9 180.0
C41 C4 C5 C3 181.0 179.8
C5 C4 C3 C2 1.0 359.5
C5 C4 C3 H3 181.0 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 N1 359.5 -0.0
C4 C5 C6 H6 179.5 180.0
C41 C4 C3 C5 179.0 180.2
C3 C4 C5 C6 360.0 0.3
C3 C4 C5 H5 180.0 180.3
C2 C3 C4 H3 180.0 179.4
C4 C3 C2 N1 358.5 0.6
C4 C3 C2 C21 180.1 180.3
C6 C5 C4 C3 360.0 0.3
C4 C5 C6 H5 180.0 180.0
N1 C6 C5 H6 180.0 180.0
C5 C6 N1 C2 0.0 360.0
H5 C5 C4 C3 180.0 180.3
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 N1 179.5 180.0
H5 C5 C6 H6 359.5 360.0
N1 C6 C5 H5 179.5 180.0
C5 C6 N1 H6 180.0 180.0
C3 C2 N1 C6 1.0 359.7
C6 N1 C2 C21 179.5 180.0
H6 C6 C5 H5 359.5 -0.0
C5 C6 H6 N1 180.0 180.0
H6 C6 N1 C2 180.0 180.0
C4 C3 C2 H3 180.0 180.6
C6 N1 C2 C3 1.0 359.7
N1 C2 C3 C21 178.4 180.2
C3 C2 C21 O21 1.7 0.2
C3 C2 C21 O22 181.5 180.3
C4 C3 H3 C2 180.0 179.4
H3 C3 C2 N1 178.5 180.0
H3 C3 C2 C21 0.1 359.8
C2 N1 C6 H6 180.0 180.0
N1 C2 C3 H3 178.5 180.0
C3 C2 N1 C21 181.5 179.8
N1 C2 C21 O21 183.2 180.0
N1 C2 C21 O22 3.1 0.0
C21 C2 C3 H3 0.1 359.8
C3 C2 C21 N1 178.5 180.2
O21 C21 C2 O22 180.1 180.0
C2 C21 O22 H22 180.2 180.0
C2 C21 O21 O22 179.9 180.0
O21 C21 O22 H22 0.0 360.0
C2 C21 O22 O21 180.1 180.0