PDB Chemical Component PCR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PCR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CB |
CG |
1.502 |
1.506 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.115 |
1.089 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
CD1 |
1.412 |
1.383 |
| CG |
CD2 |
1.421 |
1.383 |
| CD1 |
CE1 |
1.431 |
1.380 |
| CD1 |
HD11 |
1.103 |
1.080 |
| CE1 |
CZ |
1.418 |
1.387 |
| CE1 |
HE11 |
1.102 |
1.080 |
| CD2 |
CE2 |
1.434 |
1.380 |
| CD2 |
HD21 |
1.104 |
1.080 |
| CE2 |
CZ |
1.410 |
1.387 |
| CE2 |
HE21 |
1.104 |
1.080 |
| CZ |
OH |
1.374 |
1.359 |
| OH |
HO1 |
0.951 |
0.966 |
Bond Angles for PCR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CG |
CB |
HB1 |
120.4 |
109.5 |
| CG |
CB |
HB2 |
108.2 |
109.5 |
| CG |
CB |
HB3 |
108.3 |
109.5 |
| CB |
CG |
CD1 |
120.5 |
120.0 |
| CB |
CG |
CD2 |
121.0 |
120.0 |
| HB1 |
CB |
HB2 |
108.3 |
109.5 |
| HB1 |
CB |
HB3 |
108.3 |
109.4 |
| HB2 |
CB |
HB3 |
101.7 |
109.4 |
| CD1 |
CG |
CD2 |
118.5 |
120.0 |
| CG |
CD1 |
CE1 |
121.2 |
120.1 |
| CG |
CD1 |
HD11 |
118.7 |
119.9 |
| CG |
CD2 |
CE2 |
121.0 |
120.1 |
| CG |
CD2 |
HD21 |
119.1 |
119.9 |
| CE1 |
CD1 |
HD11 |
120.1 |
120.0 |
| CD1 |
CE1 |
CZ |
119.5 |
120.0 |
| CD1 |
CE1 |
HE11 |
120.7 |
120.0 |
| CZ |
CE1 |
HE11 |
119.8 |
120.0 |
| CE1 |
CZ |
CE2 |
120.2 |
119.8 |
| CE1 |
CZ |
OH |
119.5 |
120.1 |
| CE2 |
CD2 |
HD21 |
119.9 |
120.0 |
| CD2 |
CE2 |
CZ |
119.6 |
120.0 |
| CD2 |
CE2 |
HE21 |
121.0 |
120.0 |
| CZ |
CE2 |
HE21 |
119.4 |
120.0 |
| CE2 |
CZ |
OH |
120.2 |
120.1 |
| CZ |
OH |
HO1 |
119.5 |
106.8 |
Torsion Angles for PCR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HB1 |
CB |
CG |
HB2 |
234.8 |
240.0 |
| HB1 |
CB |
CG |
HB3 |
125.3 |
119.9 |
| HB2 |
CB |
CG |
HB3 |
250.5 |
240.0 |
| CD1 |
CG |
CB |
CD2 |
183.0 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
176.8 |
180.0 |
| CB |
CG |
CD1 |
HD11 |
356.8 |
359.9 |
| CB |
CG |
CD2 |
CE2 |
183.5 |
179.8 |
| CB |
CG |
CD2 |
HD21 |
3.5 |
0.2 |
| CG |
CB |
HB1 |
HB2 |
125.2 |
120.1 |
| CG |
CB |
HB1 |
HB3 |
234.7 |
240.0 |
| HB1 |
CB |
CG |
CD1 |
180.0 |
330.0 |
| HB1 |
CB |
CG |
CD2 |
357.0 |
149.7 |
| HB2 |
CB |
HB1 |
HB3 |
109.5 |
119.9 |
| CG |
CB |
HB2 |
HB1 |
227.9 |
239.9 |
| CG |
CB |
HB2 |
HB3 |
113.9 |
120.1 |
| HB2 |
CB |
CG |
CD1 |
305.2 |
90.1 |
| HB2 |
CB |
CG |
CD2 |
122.2 |
269.8 |
| HB1 |
CB |
HB2 |
HB3 |
246.0 |
240.1 |
| CG |
CB |
HB3 |
HB1 |
132.2 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
246.1 |
239.9 |
| HB3 |
CB |
CG |
CD1 |
54.8 |
210.1 |
| HB3 |
CB |
CG |
CD2 |
231.7 |
29.8 |
| HB1 |
CB |
HB3 |
HB2 |
113.9 |
119.9 |
| CD1 |
CG |
CB |
HB1 |
180.0 |
330.0 |
| CD1 |
CG |
CB |
HB2 |
305.2 |
90.1 |
| CD1 |
CG |
CB |
HB3 |
54.8 |
210.1 |
| CB |
CG |
CD1 |
CD2 |
177.0 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
0.5 |
359.5 |
| CD1 |
CG |
CD2 |
HD21 |
180.5 |
179.9 |
| CE1 |
CD1 |
CG |
HD11 |
180.0 |
180.2 |
| CG |
CD1 |
CE1 |
CZ |
0.2 |
359.9 |
| CG |
CD1 |
CE1 |
HE11 |
180.2 |
179.9 |
| CD2 |
CG |
CB |
HB1 |
357.0 |
149.7 |
| CD2 |
CG |
CB |
HB2 |
122.2 |
269.8 |
| CD2 |
CG |
CB |
HB3 |
231.7 |
29.8 |
| CB |
CG |
CD2 |
CD1 |
183.0 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
359.8 |
0.3 |
| CD2 |
CG |
CD1 |
HD11 |
179.8 |
180.1 |
| CE2 |
CD2 |
CG |
HD21 |
180.0 |
179.6 |
| CG |
CD2 |
CE2 |
CZ |
359.2 |
0.5 |
| CG |
CD2 |
CE2 |
HE21 |
179.2 |
180.2 |
| CE1 |
CD1 |
CG |
CD2 |
359.8 |
0.3 |
| CG |
CD1 |
CE1 |
HD11 |
180.0 |
179.8 |
| CZ |
CE1 |
CD1 |
HE11 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
359.5 |
0.1 |
| CD1 |
CE1 |
CZ |
OH |
176.6 |
180.0 |
| HD11 |
CD1 |
CG |
CD2 |
179.8 |
180.1 |
| CG |
CD1 |
HD11 |
CE1 |
180.0 |
180.2 |
| HD11 |
CD1 |
CE1 |
CZ |
180.2 |
180.1 |
| HD11 |
CD1 |
CE1 |
HE11 |
0.2 |
0.1 |
| CZ |
CE1 |
CD1 |
HD11 |
180.2 |
180.1 |
| CD1 |
CE1 |
CZ |
HE11 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
0.8 |
359.8 |
| CE1 |
CZ |
CE2 |
HE21 |
180.8 |
180.0 |
| CE2 |
CZ |
CE1 |
OH |
182.8 |
180.0 |
| CE1 |
CZ |
OH |
HO1 |
180.0 |
90.0 |
| HE11 |
CE1 |
CD1 |
HD11 |
0.2 |
0.1 |
| CD1 |
CE1 |
HE11 |
CZ |
180.0 |
180.0 |
| HE11 |
CE1 |
CZ |
CE2 |
179.5 |
180.1 |
| HE11 |
CE1 |
CZ |
OH |
356.6 |
0.0 |
| CG |
CD2 |
CE2 |
HD21 |
180.0 |
180.4 |
| CE1 |
CZ |
CE2 |
CD2 |
0.8 |
359.8 |
| CZ |
CE2 |
CD2 |
HE21 |
180.0 |
180.3 |
| CD2 |
CE2 |
CZ |
OH |
183.7 |
179.8 |
| CG |
CD2 |
HD21 |
CE2 |
180.0 |
179.6 |
| HD21 |
CD2 |
CE2 |
CZ |
179.2 |
180.1 |
| HD21 |
CD2 |
CE2 |
HE21 |
359.2 |
359.8 |
| CE2 |
CZ |
CE1 |
HE11 |
179.5 |
180.1 |
| CE1 |
CZ |
CE2 |
OH |
177.1 |
180.0 |
| CZ |
CE2 |
CD2 |
HD21 |
179.2 |
180.1 |
| CD2 |
CE2 |
CZ |
HE21 |
180.0 |
179.7 |
| CE2 |
CZ |
OH |
HO1 |
357.1 |
270.0 |
| HE21 |
CE2 |
CD2 |
HD21 |
359.2 |
359.8 |
| CD2 |
CE2 |
HE21 |
CZ |
180.0 |
180.3 |
| HE21 |
CE2 |
CZ |
OH |
3.7 |
0.0 |
| OH |
CZ |
CE1 |
HE11 |
356.6 |
0.0 |
| CE1 |
CZ |
OH |
CE2 |
182.8 |
180.0 |
| OH |
CZ |
CE2 |
HE21 |
3.7 |
0.0 |