PDB Chemical Component PCQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PCQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL1 |
C3 |
1.727 |
1.736 |
| CL2 |
C5 |
1.733 |
1.736 |
| O1 |
C4 |
1.364 |
1.359 |
| O1 |
HO1 |
0.950 |
0.966 |
| C1 |
C2 |
1.537 |
1.393 |
| C1 |
C6 |
1.447 |
1.394 |
| C1 |
C1' |
1.515 |
1.482 |
| C2 |
C3 |
1.415 |
1.380 |
| C2 |
H21 |
1.079 |
1.080 |
| C3 |
C4 |
1.453 |
1.388 |
| C4 |
C5 |
1.455 |
1.388 |
| C5 |
C6 |
1.420 |
1.380 |
| C6 |
H61 |
1.080 |
1.080 |
| CL3 |
C3' |
1.716 |
1.736 |
| CL4 |
C5' |
1.724 |
1.737 |
| O1' |
C4' |
1.362 |
1.359 |
| O1' |
HO1' |
0.950 |
0.965 |
| C1' |
C2' |
1.444 |
1.393 |
| C1' |
C6' |
1.469 |
1.393 |
| C2' |
C3' |
1.415 |
1.380 |
| C2' |
H2'1 |
1.080 |
1.080 |
| C3' |
C4' |
1.434 |
1.388 |
| C4' |
C5' |
1.445 |
1.389 |
| C5' |
C6' |
1.428 |
1.380 |
| C6' |
H6'1 |
1.080 |
1.080 |
Bond Angles for PCQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1 |
C3 |
C2 |
117.3 |
120.0 |
| CL1 |
C3 |
C4 |
120.2 |
119.9 |
| CL2 |
C5 |
C4 |
119.2 |
119.9 |
| CL2 |
C5 |
C6 |
118.3 |
120.0 |
| C4 |
O1 |
HO1 |
109.5 |
106.8 |
| O1 |
C4 |
C3 |
124.1 |
119.9 |
| O1 |
C4 |
C5 |
118.9 |
120.0 |
| C2 |
C1 |
C6 |
115.8 |
119.8 |
| C2 |
C1 |
C1' |
121.8 |
120.1 |
| C1 |
C2 |
C3 |
120.2 |
120.0 |
| C1 |
C2 |
H21 |
119.9 |
120.0 |
| C6 |
C1 |
C1' |
122.5 |
120.0 |
| C1 |
C6 |
C5 |
122.1 |
120.0 |
| C1 |
C6 |
H61 |
119.0 |
120.0 |
| C1 |
C1' |
C2' |
120.9 |
120.1 |
| C1 |
C1' |
C6' |
122.6 |
120.1 |
| C3 |
C2 |
H21 |
119.9 |
120.0 |
| C2 |
C3 |
C4 |
122.5 |
120.1 |
| C3 |
C4 |
C5 |
117.0 |
120.1 |
| C4 |
C5 |
C6 |
122.5 |
120.1 |
| C5 |
C6 |
H61 |
119.0 |
120.0 |
| CL3 |
C3' |
C2' |
118.0 |
120.0 |
| CL3 |
C3' |
C4' |
119.2 |
119.9 |
| CL4 |
C5' |
C4' |
118.5 |
119.9 |
| CL4 |
C5' |
C6' |
119.7 |
120.0 |
| C4' |
O1' |
HO1' |
109.5 |
106.9 |
| O1' |
C4' |
C3' |
123.6 |
120.0 |
| O1' |
C4' |
C5' |
119.9 |
119.9 |
| C2' |
C1' |
C6' |
116.5 |
119.8 |
| C1' |
C2' |
C3' |
121.5 |
120.0 |
| C1' |
C2' |
H2'1 |
119.3 |
120.0 |
| C1' |
C6' |
C5' |
120.9 |
120.0 |
| C1' |
C6' |
H6'1 |
119.6 |
120.0 |
| C3' |
C2' |
H2'1 |
119.2 |
120.0 |
| C2' |
C3' |
C4' |
122.7 |
120.1 |
| C3' |
C4' |
C5' |
116.5 |
120.1 |
| C4' |
C5' |
C6' |
121.8 |
120.1 |
| C5' |
C6' |
H6'1 |
119.5 |
120.0 |
Torsion Angles for PCQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C4 |
C3 |
CL1 |
0.4 |
0.0 |
| C1 |
C2 |
C3 |
CL1 |
179.7 |
180.0 |
| CL1 |
C3 |
C2 |
H21 |
359.7 |
359.9 |
| C2 |
C3 |
CL1 |
C4 |
180.2 |
180.1 |
| CL1 |
C3 |
C4 |
C5 |
180.6 |
180.3 |
| O1 |
C4 |
C5 |
CL2 |
359.5 |
0.3 |
| C1 |
C6 |
C5 |
CL2 |
180.4 |
180.0 |
| C3 |
C4 |
C5 |
CL2 |
179.3 |
180.1 |
| C4 |
C5 |
CL2 |
C6 |
180.3 |
179.4 |
| CL2 |
C5 |
C6 |
H61 |
0.4 |
359.7 |
| CL1 |
C3 |
C4 |
O1 |
0.4 |
0.0 |
| CL2 |
C5 |
C4 |
O1 |
359.5 |
0.3 |
| C2 |
C3 |
C4 |
O1 |
180.2 |
180.0 |
| C3 |
C4 |
O1 |
C5 |
180.2 |
180.2 |
| O1 |
C4 |
C5 |
C6 |
179.7 |
179.7 |
| HO1 |
O1 |
C4 |
C3 |
335.9 |
90.1 |
| HO1 |
O1 |
C4 |
C5 |
155.6 |
269.8 |
| CL1 |
C3 |
C2 |
C1 |
179.7 |
180.0 |
| C6 |
C1 |
C2 |
C1' |
179.8 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
0.3 |
359.7 |
| C2 |
C1 |
C6 |
H61 |
180.2 |
180.0 |
| C2 |
C1 |
C1' |
C2' |
152.0 |
140.3 |
| C2 |
C1 |
C1' |
C6' |
332.0 |
320.0 |
| C3 |
C2 |
C1 |
H21 |
180.0 |
179.9 |
| C1 |
C2 |
C3 |
C4 |
359.9 |
0.1 |
| CL2 |
C5 |
C6 |
C1 |
180.4 |
180.0 |
| C2 |
C1 |
C6 |
C1' |
180.2 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
359.7 |
360.0 |
| C6 |
C1 |
C2 |
H21 |
179.7 |
180.1 |
| C6 |
C1 |
C1' |
C2' |
332.2 |
320.2 |
| C6 |
C1 |
C1' |
C6' |
152.3 |
140.0 |
| C4 |
C5 |
C6 |
C1 |
0.1 |
0.6 |
| C5 |
C6 |
C1 |
H61 |
180.0 |
179.7 |
| C2 |
C1 |
C1' |
C6 |
179.8 |
180.0 |
| C1' |
C1 |
C2 |
C3 |
180.0 |
180.0 |
| C1' |
C1 |
C2 |
H21 |
359.9 |
0.0 |
| C1' |
C1 |
C6 |
C5 |
180.0 |
179.7 |
| C1' |
C1 |
C6 |
H61 |
0.0 |
0.1 |
| C2' |
C1' |
C1 |
C6' |
179.9 |
180.2 |
| C1 |
C1' |
C2' |
C3' |
180.1 |
180.0 |
| C1 |
C1' |
C2' |
H2'1 |
0.1 |
360.0 |
| C1 |
C1' |
C6' |
C5' |
180.0 |
179.7 |
| C1 |
C1' |
C6' |
H6'1 |
0.0 |
0.2 |
| CL1 |
C3 |
C2 |
C4 |
179.8 |
179.9 |
| O1 |
C4 |
C3 |
C2 |
180.2 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
359.7 |
360.0 |
| C3 |
C2 |
C1 |
C1' |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H21 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
0.4 |
0.2 |
| H21 |
C2 |
C1 |
C6 |
179.7 |
180.1 |
| H21 |
C2 |
C1 |
C1' |
359.9 |
0.0 |
| C1 |
C2 |
H21 |
C3 |
180.0 |
179.9 |
| H21 |
C2 |
C3 |
C4 |
179.9 |
180.0 |
| CL1 |
C3 |
C4 |
C2 |
180.2 |
180.1 |
| CL2 |
C5 |
C4 |
C3 |
179.3 |
180.1 |
| C3 |
C4 |
O1 |
HO1 |
335.9 |
90.1 |
| O1 |
C4 |
C3 |
C5 |
179.8 |
179.8 |
| C4 |
C3 |
C2 |
H21 |
179.9 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
359.5 |
359.5 |
| CL2 |
C5 |
C4 |
C6 |
179.7 |
180.6 |
| C5 |
C4 |
O1 |
HO1 |
155.6 |
269.8 |
| O1 |
C4 |
C5 |
C3 |
180.2 |
180.2 |
| C1 |
C6 |
C5 |
C4 |
0.1 |
0.6 |
| C4 |
C5 |
C6 |
H61 |
180.1 |
180.2 |
| CL2 |
C5 |
C6 |
C4 |
180.3 |
179.4 |
| C5 |
C6 |
C1 |
C1' |
180.0 |
179.7 |
| C1 |
C6 |
C5 |
H61 |
180.0 |
180.3 |
| H61 |
C6 |
C1 |
C1' |
0.0 |
0.1 |
| C1 |
C6 |
H61 |
C5 |
180.0 |
179.7 |
| O1' |
C4' |
C3' |
CL3 |
0.1 |
0.0 |
| C1' |
C2' |
C3' |
CL3 |
179.7 |
180.0 |
| CL3 |
C3' |
C2' |
H2'1 |
359.7 |
0.1 |
| C2' |
C3' |
CL3 |
C4' |
180.1 |
179.9 |
| CL3 |
C3' |
C4' |
C5' |
180.3 |
180.0 |
| O1' |
C4' |
C5' |
CL4 |
0.0 |
359.9 |
| C1' |
C6' |
C5' |
CL4 |
180.1 |
180.3 |
| C3' |
C4' |
C5' |
CL4 |
179.8 |
180.0 |
| C4' |
C5' |
CL4 |
C6' |
180.1 |
179.7 |
| CL4 |
C5' |
C6' |
H6'1 |
0.0 |
359.8 |
| CL3 |
C3' |
C4' |
O1' |
0.1 |
0.0 |
| CL4 |
C5' |
C4' |
O1' |
0.0 |
359.9 |
| C2' |
C3' |
C4' |
O1' |
180.0 |
180.1 |
| C3' |
C4' |
O1' |
C5' |
180.2 |
180.0 |
| O1' |
C4' |
C5' |
C6' |
180.1 |
179.7 |
| HO1' |
O1' |
C4' |
C3' |
51.8 |
90.0 |
| HO1' |
O1' |
C4' |
C5' |
231.6 |
270.0 |
| C1 |
C1' |
C2' |
C6' |
180.0 |
179.8 |
| CL3 |
C3' |
C2' |
C1' |
179.7 |
180.0 |
| C2' |
C1' |
C6' |
C5' |
0.0 |
359.4 |
| C2' |
C1' |
C6' |
H6'1 |
180.1 |
180.0 |
| C3' |
C2' |
C1' |
H2'1 |
180.0 |
180.1 |
| C1' |
C2' |
C3' |
C4' |
359.9 |
360.0 |
| C1 |
C1' |
C6' |
C2' |
179.9 |
180.2 |
| CL4 |
C5' |
C6' |
C1' |
180.1 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
0.0 |
0.3 |
| C6' |
C1' |
C2' |
H2'1 |
180.0 |
180.2 |
| C4' |
C5' |
C6' |
C1' |
360.0 |
0.6 |
| C5' |
C6' |
C1' |
H6'1 |
180.0 |
179.5 |
| CL3 |
C3' |
C2' |
C4' |
179.8 |
180.1 |
| O1' |
C4' |
C3' |
C2' |
180.0 |
180.1 |
| C3' |
C2' |
C1' |
C6' |
0.0 |
0.3 |
| C1' |
C2' |
C3' |
H2'1 |
180.0 |
179.9 |
| C2' |
C3' |
C4' |
C5' |
0.1 |
0.0 |
| H2'1 |
C2' |
C1' |
C6' |
180.0 |
180.2 |
| C1' |
C2' |
H2'1 |
C3' |
180.0 |
180.1 |
| H2'1 |
C2' |
C3' |
C4' |
179.9 |
180.0 |
| CL3 |
C3' |
C4' |
C2' |
180.2 |
179.9 |
| CL4 |
C5' |
C4' |
C3' |
179.8 |
180.0 |
| C3' |
C4' |
O1' |
HO1' |
51.8 |
90.0 |
| O1' |
C4' |
C3' |
C5' |
179.8 |
180.0 |
| C4' |
C3' |
C2' |
H2'1 |
179.9 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
359.9 |
359.7 |
| CL4 |
C5' |
C4' |
C6' |
179.9 |
180.3 |
| C5' |
C4' |
O1' |
HO1' |
231.6 |
270.0 |
| O1' |
C4' |
C5' |
C3' |
180.2 |
180.0 |
| C1' |
C6' |
C5' |
C4' |
360.0 |
0.6 |
| C4' |
C5' |
C6' |
H6'1 |
180.0 |
180.0 |
| CL4 |
C5' |
C6' |
C4' |
180.1 |
179.7 |
| C1' |
C6' |
C5' |
H6'1 |
180.0 |
180.5 |
| C1' |
C6' |
H6'1 |
C5' |
180.0 |
179.5 |