PDB Chemical Component PCN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PCN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C1 1.305 1.208
C1 C2 1.505 1.506
C1 HC1 1.103 1.080
C2 C3 1.518 1.530
C2 N8 1.466 1.465
C2 HC2 1.115 1.091
C3 S4 1.877 1.848
C3 N7 1.473 1.493
C3 HC3 1.115 1.090
S4 C5 1.870 1.845
C5 C51 1.542 1.529
C5 C52 1.507 1.530
C5 C6 1.523 1.545
C51 H511 1.115 1.090
C51 H512 1.115 1.090
C51 H513 1.115 1.090
C52 H521 1.115 1.090
C52 H522 1.115 1.090
C52 H523 1.115 1.090
C6 C61 1.552 1.507
C6 N7 1.475 1.465
C6 HC6 1.115 1.090
C61 O62 1.264 1.208
C61 O63 1.254 1.342
O63 H63O 0.950 0.967
N7 HN7 1.020 1.009
N8 C9 1.429 1.347
N8 HN8 1.020 0.970
C9 O91 1.261 1.216
C9 C10 1.451 1.482
C10 N11 1.402 1.303
C10 C14 1.444 1.478
N11 O12 1.493 1.416
O12 C13 1.438 1.429
C13 H131 1.115 1.091
C13 H132 1.115 1.090
C13 H133 1.115 1.090
C14 C15 1.438 1.370
C14 N18 1.261 1.332
C15 S16 1.652 1.788
C15 H15 1.103 1.079
S16 C17 1.667 1.787
C17 N18 1.378 1.319
C17 N19 1.402 1.385
N19 H191 1.020 0.970
N19 H192 1.020 0.970

Bond Angles for PCN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 122.5 120.0
O1 C1 HC1 111.4 120.0
C2 C1 HC1 126.2 120.1
C1 C2 C3 109.0 109.5
C1 C2 N8 108.2 109.5
C1 C2 HC2 112.3 109.5
C3 C2 N8 114.0 109.4
C3 C2 HC2 106.3 109.5
C2 C3 S4 113.0 111.4
C2 C3 N7 111.4 111.4
C2 C3 HC3 104.3 111.2
N8 C2 HC2 107.2 109.4
C2 N8 C9 121.0 120.0
C2 N8 HN8 120.8 120.0
S4 C3 N7 104.4 99.5
S4 C3 HC3 111.2 111.4
C3 S4 C5 93.2 97.2
N7 C3 HC3 112.8 111.4
C3 N7 C6 111.0 112.4
C3 N7 HN7 111.6 106.7
S4 C5 C51 107.7 111.0
S4 C5 C52 108.4 111.0
S4 C5 C6 99.6 101.8
C51 C5 C52 112.2 110.9
C51 C5 C6 114.2 111.0
C5 C51 H511 112.9 109.5
C5 C51 H512 107.7 109.5
C5 C51 H513 112.9 109.5
C52 C5 C6 113.6 111.0
C5 C52 H521 112.6 109.5
C5 C52 H522 108.4 109.5
C5 C52 H523 112.6 109.5
C5 C6 C61 114.1 108.5
C5 C6 N7 105.9 113.8
C5 C6 HC6 108.7 108.6
H511 C51 H512 112.9 109.4
H511 C51 H513 97.6 109.4
H512 C51 H513 112.9 109.4
H521 C52 H522 112.6 109.4
H521 C52 H523 97.8 109.4
H522 C52 H523 112.6 109.5
C61 C6 N7 109.1 108.6
C61 C6 HC6 105.6 108.6
C6 C61 O62 117.2 120.0
C6 C61 O63 115.4 120.0
N7 C6 HC6 113.8 108.6
C6 N7 HN7 111.6 106.7
O62 C61 O63 127.4 120.0
C61 O63 H63O 115.3 120.0
C9 N8 HN8 118.2 120.0
N8 C9 O91 119.4 120.0
N8 C9 C10 113.9 120.0
O91 C9 C10 126.7 120.0
C9 C10 N11 128.4 120.0
C9 C10 C14 120.9 120.0
N11 C10 C14 110.7 120.0
C10 N11 O12 115.9 120.0
C10 C14 C15 124.1 120.4
C10 C14 N18 127.9 120.4
N11 O12 C13 109.4 106.8
O12 C13 H131 112.2 109.5
O12 C13 H132 109.4 109.5
O12 C13 H133 112.2 109.5
H131 C13 H132 112.2 109.5
H131 C13 H133 98.2 109.4
H132 C13 H133 112.2 109.5
C15 C14 N18 108.0 119.2
C14 C15 S16 113.0 100.7
C14 C15 H15 117.6 129.6
C14 N18 C17 118.5 121.1
S16 C15 H15 129.5 129.7
C15 S16 C17 91.0 97.3
S16 C17 N18 109.5 101.7
S16 C17 N19 126.5 129.2
N18 C17 N19 123.9 129.2
C17 N19 H191 106.2 120.1
C17 N19 H192 126.5 120.0
H191 N19 H192 106.2 119.9

Torsion Angles for PCN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 HC1 180.0 180.0
O1 C1 C2 C3 103.6 120.0
O1 C1 C2 N8 339.1 360.0
O1 C1 C2 HC2 221.1 240.0
O1 C1 C2 HC1 180.0 180.0
C3 C2 C1 N8 124.4 120.0
C3 C2 C1 HC2 242.5 240.0
C1 C2 C3 S4 191.9 305.6
C1 C2 C3 N7 309.1 55.8
C1 C2 C3 HC3 71.1 180.7
N8 C2 C1 HC2 118.1 120.0
C1 C2 N8 C9 211.8 275.0
C1 C2 N8 HN8 31.8 95.0
O1 C1 HC1 C2 180.0 180.0
HC1 C1 C2 C3 283.6 300.0
HC1 C1 C2 N8 159.1 180.0
HC1 C1 C2 HC2 41.1 60.0
C3 C2 C1 HC1 283.6 300.0
C1 C2 C3 N8 239.0 240.0
C1 C2 C3 HC2 121.2 120.0
N8 C2 C3 HC2 242.2 240.1
C3 C2 N8 C9 90.4 155.0
C3 C2 N8 HN8 270.4 334.9
S4 C3 C2 N7 242.8 249.9
S4 C3 C2 HC3 120.9 124.9
C2 C3 S4 C5 125.9 149.6
N7 C3 C2 HC3 238.0 235.1
C2 C3 N7 C6 262.9 202.0
C2 C3 N7 HN7 137.7 85.4
N8 C2 C1 HC1 159.1 180.0
C1 C2 N8 C3 121.5 120.0
C1 C2 N8 HC2 238.7 240.0
C3 C2 N8 HC2 117.3 120.0
N8 C2 C3 S4 312.9 65.7
N8 C2 C3 N7 70.1 175.8
N8 C2 C3 HC3 192.0 300.8
C9 N8 C2 HN8 180.0 180.1
C2 N8 C9 O91 7.1 5.5
C2 N8 C9 C10 185.9 185.5
HC2 C2 C1 HC1 41.1 60.0
C1 C2 HC2 C3 240.9 240.0
C1 C2 HC2 N8 118.7 120.0
C3 C2 HC2 N8 237.8 240.1
HC2 C2 C3 S4 70.7 185.6
HC2 C2 C3 N7 187.9 295.8
HC2 C2 C3 HC3 309.8 60.7
HC2 C2 N8 C9 333.1 35.0
HC2 C2 N8 HN8 153.1 215.0
S4 C3 C2 N8 312.9 65.7
S4 C3 C2 HC2 70.7 185.6
C2 C3 S4 N7 121.2 117.5
C2 C3 S4 HC3 243.1 235.2
N7 C3 S4 HC3 122.0 117.6
S4 C3 N7 C6 25.1 319.6
S4 C3 N7 HN7 259.9 203.0
C3 S4 C5 C51 209.8 225.8
C3 S4 C5 C52 88.1 102.1
C3 S4 C5 C6 329.2 344.0
N7 C3 C2 N8 70.1 175.8
N7 C3 C2 HC2 187.9 295.8
C2 C3 N7 S4 237.8 242.4
C2 C3 N7 HC3 116.9 124.8
S4 C3 N7 HC3 239.1 242.4
N7 C3 S4 C5 4.8 32.0
C5 C6 N7 C3 308.1 32.4
C61 C6 N7 C3 184.9 271.5
C3 N7 C6 HC6 67.4 153.6
C6 N7 C3 HN7 125.2 116.6
HC3 C3 C2 N8 192.0 300.8
HC3 C3 C2 HC2 309.8 60.7
C2 C3 HC3 S4 122.1 124.9
C2 C3 HC3 N7 239.0 235.1
S4 C3 HC3 N7 117.0 110.2
HC3 C3 S4 C5 242.8 274.4
HC3 C3 N7 C6 146.0 77.2
HC3 C3 N7 HN7 20.8 320.6
C5 S4 C3 N7 4.8 32.0
C5 S4 C3 HC3 242.8 274.4
C51 C5 S4 C52 121.7 123.8
C51 C5 S4 C6 240.6 241.9
S4 C5 C51 H511 54.7 172.4
S4 C5 C51 H512 180.0 292.4
S4 C5 C51 H513 305.3 52.4
C52 C5 S4 C6 118.9 118.1
S4 C5 C52 H521 54.7 307.6
S4 C5 C52 H522 180.0 67.6
S4 C5 C52 H523 305.2 187.6
S4 C5 C6 C61 170.0 115.3
S4 C5 C6 N7 50.0 354.3
S4 C5 C6 HC6 287.4 233.2
S4 C5 C51 C52 240.7 236.2
S4 C5 C51 C6 109.6 112.4
C52 C5 C51 C6 228.9 236.2
C51 C5 C52 H521 295.9 183.8
C51 C5 C52 H522 61.2 303.8
C51 C5 C52 H523 186.4 63.8
C51 C5 C6 C61 284.5 233.5
C51 C5 C6 N7 164.5 112.5
C51 C5 C6 HC6 41.9 351.4
H511 C51 C5 H512 234.8 240.0
H511 C51 C5 H513 109.5 120.0
H512 C51 C5 H513 234.7 240.0
S4 C5 C52 C51 118.8 123.8
S4 C5 C52 C6 250.3 247.6
C51 C5 C52 C6 131.4 123.8
C52 C5 C51 H511 174.0 296.2
C52 C5 C51 H512 299.2 56.2
C52 C5 C51 H513 64.5 176.2
C52 C5 C6 C61 54.9 357.2
C52 C5 C6 N7 295.0 236.2
C52 C5 C6 HC6 172.4 115.1
H521 C52 C5 H522 234.7 240.0
H521 C52 C5 H523 109.5 120.0
H522 C52 C5 H523 234.8 240.0
C3 N7 C6 C5 308.1 32.4
S4 C5 C6 C51 245.5 241.8
S4 C5 C6 C52 115.0 118.1
C51 C5 C6 C52 229.5 236.3
C6 C5 C51 H511 305.1 60.0
C6 C5 C51 H512 70.3 180.0
C6 C5 C51 H513 195.6 300.0
C6 C5 C52 H521 164.4 60.0
C6 C5 C52 H522 289.7 180.0
C6 C5 C52 H523 55.0 300.0
C61 C6 C5 N7 119.9 121.0
C61 C6 C5 HC6 242.5 242.2
C5 C6 C61 O62 106.7 254.4
C5 C6 C61 O63 286.5 74.3
N7 C6 C5 HC6 122.6 121.2
C5 C6 N7 HN7 73.4 149.0
H511 C51 C5 C52 174.0 296.2
H511 C51 C5 C6 305.1 60.0
C5 C51 H511 H512 122.4 120.0
C5 C51 H511 H513 241.2 239.9
H512 C51 H511 H513 118.8 119.9
H512 C51 C5 C52 299.2 56.2
H512 C51 C5 C6 70.3 180.0
C5 C51 H512 H511 234.8 240.0
C5 C51 H512 H513 125.3 120.1
H511 C51 H512 H513 250.5 240.1
H513 C51 C5 C52 64.5 176.2
H513 C51 C5 C6 195.6 300.0
C5 C51 H513 H511 118.8 120.0
C5 C51 H513 H512 237.6 239.9
H511 C51 H513 H512 118.8 119.9
H521 C52 C5 C6 164.4 60.0
C5 C52 H521 H522 122.9 120.0
C5 C52 H521 H523 241.5 240.0
H522 C52 H521 H523 118.5 119.9
H522 C52 C5 C6 289.7 180.0
C5 C52 H522 H521 234.7 240.0
C5 C52 H522 H523 125.2 120.0
H521 C52 H522 H523 250.5 240.1
H523 C52 C5 C6 55.0 300.0
C5 C52 H523 H521 118.6 120.0
C5 C52 H523 H522 237.1 240.0
H521 C52 H523 H522 118.5 119.9
C3 N7 C6 C61 184.9 271.5
C5 C6 C61 N7 241.8 235.8
C5 C6 C61 HC6 119.3 117.9
N7 C6 C61 HC6 237.4 242.1
C61 C6 N7 HN7 310.2 28.1
O62 C61 C6 O63 180.2 180.0
C6 C61 O63 H63O 180.0 180.0
C6 N7 C3 HC3 146.0 77.2
C3 N7 C6 HN7 234.8 243.4
C5 C6 N7 C61 123.2 121.0
C5 C6 N7 HC6 240.7 238.8
C61 C6 N7 HC6 117.5 117.9
N7 C6 C61 O62 224.9 18.6
N7 C6 C61 O63 44.6 198.5
C5 C6 HC6 C61 237.2 242.2
C5 C6 HC6 N7 117.7 124.3
C61 C6 HC6 N7 240.5 242.1
HC6 C6 C61 O62 347.5 136.5
HC6 C6 C61 O63 167.2 316.4
HC6 C6 N7 HN7 192.7 270.2
O62 C61 C6 N7 224.9 18.6
O62 C61 C6 HC6 347.5 136.5
C6 C61 O62 O63 179.7 180.0
O62 C61 O63 H63O 359.7 360.0
O63 C61 C6 N7 44.6 198.5
O63 C61 C6 HC6 167.2 316.4
C6 C61 O63 O62 180.3 180.0
HN7 N7 C3 HC3 20.8 320.6
C3 N7 HN7 C6 124.9 120.3
HN7 N7 C6 HC6 192.7 270.2
C9 N8 C2 HC2 333.1 35.0
C2 N8 C9 HN8 180.0 179.9
O91 C9 N8 C10 181.2 179.9
N8 C9 C10 N11 48.4 186.8
N8 C9 C10 C14 228.0 6.8
HN8 N8 C2 HC2 153.1 215.0
C2 N8 HN8 C9 180.0 180.1
HN8 N8 C9 O91 187.1 185.5
HN8 N8 C9 C10 5.9 5.6
O91 C9 N8 HN8 187.1 185.5
N8 C9 O91 C10 178.7 180.1
O91 C9 C10 N11 227.2 6.9
O91 C9 C10 C14 46.7 186.8
C10 C9 N8 HN8 5.9 5.6
N8 C9 C10 O91 181.3 179.9
N11 C10 C9 C14 180.4 180.1
C9 C10 N11 O12 2.7 353.8
C9 C10 C14 C15 327.1 189.7
C9 C10 C14 N18 147.2 9.4
C9 C10 N11 C14 179.6 179.9
N11 C10 C14 C15 146.8 9.6
N11 C10 C14 N18 326.8 189.3
C10 N11 O12 C13 165.4 180.0
C9 C10 C14 N11 180.4 180.1
C14 C10 N11 O12 183.1 173.8
C15 C14 C10 N18 180.0 180.3
C10 C14 C15 S16 178.5 180.0
C10 C14 C15 H15 358.5 360.0
C10 C14 N18 C17 181.0 179.8
O12 N11 C10 C14 183.1 173.8
N11 O12 C13 H131 54.7 60.0
N11 O12 C13 H132 180.0 180.0
N11 O12 C13 H133 305.3 300.1
H131 C13 O12 H132 234.7 240.0
H131 C13 O12 H133 109.5 120.0
H132 C13 O12 H133 234.8 240.0
O12 C13 H131 H132 123.7 120.0
O12 C13 H131 H133 241.9 240.0
H132 C13 H131 H133 118.1 120.0
O12 C13 H132 H131 234.7 240.0
O12 C13 H132 H133 125.3 120.1
H131 C13 H132 H133 250.5 240.1
O12 C13 H133 H131 118.1 120.0
O12 C13 H133 H132 236.3 239.9
H131 C13 H133 H132 118.2 119.9
C10 C14 C15 N18 180.0 179.7
C15 C14 N18 C17 1.0 359.5
S16 C15 C14 H15 180.0 180.0
C14 C15 S16 C17 1.3 360.0
C10 C14 N18 C15 180.0 180.3
N18 C14 C15 S16 358.5 0.3
N18 C14 C15 H15 178.5 180.2
S16 C17 N18 C14 359.9 0.4
C14 N18 C17 N19 179.4 180.2
S16 C15 C14 N18 358.5 0.3
C14 C15 S16 H15 180.0 180.0
C15 S16 C17 N18 359.3 359.8
C15 S16 C17 N19 179.8 180.0
H15 C15 C14 N18 178.5 180.2
C14 C15 H15 S16 180.0 180.0
H15 C15 S16 C17 181.3 180.0
C14 N18 C17 S16 359.9 0.4
C17 S16 C15 H15 181.3 180.0
N18 C17 S16 N19 179.5 179.8
S16 C17 N19 H191 54.7 0.0
S16 C17 N19 H192 180.0 180.0
S16 C17 N18 N19 180.5 180.2
N18 C17 N19 H191 235.3 180.3
N18 C17 N19 H192 0.6 0.3
S16 C17 N19 N18 179.4 179.7
H191 N19 C17 H192 234.7 180.0
C17 N19 H191 H192 136.9 180.0
C17 N19 H192 H191 234.7 180.0