PDB Chemical Component PCG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PCG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PA O1A 1.486 1.610
PA O2A 1.480 1.479
PA O5' 1.489 1.605
PA O3' 1.513 1.617
O1A HO1A 0.950 0.967
O5' C5' 1.430 1.434
C5' C4' 1.490 1.517
C5' H5'1 1.115 1.090
C5' H5'2 1.116 1.091
C4' O4' 1.411 1.427
C4' C3' 1.537 1.551
C4' H4' 1.114 1.090
O4' C1' 1.427 1.446
C3' O3' 1.430 1.414
C3' C2' 1.563 1.538
C3' H3' 1.115 1.089
C2' O2' 1.429 1.429
C2' C1' 1.562 1.547
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.966
C1' N9 1.463 1.465
C1' H1' 1.114 1.089
N9 C8 1.396 1.365
N9 C4 1.379 1.368
C8 N7 1.304 1.301
C8 H8 1.103 1.080
N7 C5 1.421 1.355
C5 C6 1.432 1.415
C5 C4 1.415 1.399
C6 O6 1.266 1.219
C6 N1 1.413 1.351
N1 C2 1.410 1.363
N1 HN1 1.020 0.970
C2 N2 1.357 1.372
C2 N3 1.365 1.313
N2 HN21 1.019 0.970
N2 HN22 1.019 0.971
N3 C4 1.377 1.338

Bond Angles for PCG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A PA O2A 109.1 109.2
O1A PA O5' 118.0 109.2
O1A PA O3' 102.4 109.2
PA O1A HO1A 109.1 106.8
O2A PA O5' 99.9 109.2
O2A PA O3' 116.1 109.1
O5' PA O3' 112.0 110.9
PA O5' C5' 123.7 108.6
PA O3' C3' 122.9 105.3
O5' C5' C4' 106.3 107.8
O5' C5' H5'1 113.4 109.8
O5' C5' H5'2 113.4 109.8
C4' C5' H5'1 113.4 109.8
C4' C5' H5'2 113.4 109.8
C5' C4' O4' 119.3 115.8
C5' C4' C3' 128.0 108.2
C5' C4' H4' 60.2 109.8
H5'1 C5' H5'2 97.0 109.8
O4' C4' C3' 111.8 102.9
O4' C4' H4' 130.6 109.9
C4' O4' C1' 106.9 105.6
C3' C4' H4' 93.4 109.9
C4' C3' O3' 106.1 107.4
C4' C3' C2' 95.9 101.1
C4' C3' H3' 123.3 110.3
O4' C1' C2' 103.6 107.3
O4' C1' N9 99.6 109.9
O4' C1' H1' 120.6 109.9
O3' C3' C2' 119.0 115.5
O3' C3' H3' 102.2 110.7
C2' C3' H3' 111.5 111.3
C3' C2' O2' 116.7 110.6
C3' C2' C1' 100.2 103.1
C3' C2' H2' 109.5 110.6
O2' C2' C1' 104.4 111.3
O2' C2' H2' 105.7 110.6
C2' O2' HO2' 116.7 106.8
C1' C2' H2' 120.9 110.4
C2' C1' N9 114.1 109.9
C2' C1' H1' 107.7 109.9
N9 C1' H1' 111.2 109.8
C1' N9 C8 138.0 126.2
C1' N9 C4 112.5 126.2
C8 N9 C4 109.4 107.5
N9 C8 N7 111.6 109.8
N9 C8 H8 127.1 125.1
N9 C4 C5 102.7 106.1
N9 C4 N3 125.0 134.3
N7 C8 H8 121.3 125.1
C8 N7 C5 104.7 109.3
N7 C5 C6 128.4 134.1
N7 C5 C4 111.2 107.3
C6 C5 C4 120.4 118.6
C5 C6 O6 128.4 120.8
C5 C6 N1 108.0 118.3
C5 C4 N3 132.1 119.6
O6 C6 N1 123.7 120.9
C6 N1 C2 127.0 120.3
C6 N1 HN1 116.5 119.8
C2 N1 HN1 116.4 119.8
N1 C2 N2 112.8 119.0
N1 C2 N3 126.3 121.9
N2 C2 N3 120.8 119.0
C2 N2 HN21 112.8 120.0
C2 N2 HN22 111.0 120.0
C2 N3 C4 106.0 121.2
HN21 N2 HN22 111.0 120.0

Torsion Angles for PCG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2A PA O1A O5' 113.0 119.4
O2A PA O1A O3' 236.5 240.7
O5' PA O1A O3' 123.5 121.4
O1A PA O5' C5' 279.6 184.5
O1A PA O3' C3' 92.1 178.1
O1A PA O2A O5' 235.6 240.7
O1A PA O2A O3' 115.0 119.3
O2A PA O1A HO1A 180.0 59.3
O5' PA O2A O3' 239.4 238.6
O2A PA O5' C5' 161.6 65.2
O2A PA O3' C3' 210.8 297.4
O1A PA O5' O2A 118.0 119.3
O1A PA O5' O3' 241.5 239.6
O5' PA O1A HO1A 67.0 300.0
O2A PA O5' O3' 123.5 120.3
O5' PA O3' C3' 324.7 57.8
PA O5' C5' C4' 354.1 59.2
PA O5' C5' H5'1 119.4 299.6
PA O5' C5' H5'2 228.9 178.7
O1A PA O3' O2A 241.3 240.7
O1A PA O3' O5' 127.4 120.4
O3' PA O1A HO1A 303.5 178.6
O2A PA O3' O5' 246.1 239.6
O3' PA O5' C5' 38.2 304.8
C4' C3' O3' PA 2.0 295.4
PA O3' C3' C2' 255.6 183.5
PA O3' C3' H3' 132.3 55.9
HO1A O1A PA O2A 180.0 59.3
HO1A O1A PA O5' 67.0 300.0
HO1A O1A PA O3' 303.5 178.6
C5' O5' PA O3' 38.2 304.8
C4' C5' O5' H5'1 234.7 119.6
C4' C5' O5' H5'2 125.2 240.5
O5' C5' C4' O4' 154.4 176.9
O5' C5' C4' C3' 323.0 291.8
O5' C5' C4' H4' 31.8 51.7
H5'1 C5' O5' H5'2 250.6 120.9
O5' C5' C4' H5'1 125.3 240.4
O5' C5' C4' H5'2 234.7 119.6
H5'1 C5' C4' H5'2 109.4 239.2
O4' C4' C5' C3' 191.4 245.1
O4' C4' C5' H4' 122.6 125.2
C5' C4' O4' C1' 172.9 161.2
C3' C4' C5' H4' 291.2 240.1
C5' C4' C3' O3' 38.9 72.9
C5' C4' C3' C2' 161.4 194.3
C5' C4' C3' H3' 281.9 312.2
O5' C5' H5'1 C4' 238.6 118.3
O5' C5' H5'1 H5'2 119.3 239.2
C4' C5' H5'1 H5'2 240.7 120.8
H5'1 C5' C4' O4' 29.1 296.5
H5'1 C5' C4' C3' 197.7 51.4
H5'1 C5' C4' H4' 266.4 171.3
O5' C5' H5'2 C4' 121.4 241.7
O5' C5' H5'2 H5'1 240.7 120.9
C4' C5' H5'2 H5'1 119.3 239.2
H5'2 C5' C4' O4' 279.6 57.4
H5'2 C5' C4' C3' 88.3 172.2
H5'2 C5' C4' H4' 157.0 292.2
O4' C4' C5' H5'1 29.1 296.5
O4' C4' C5' H5'2 279.6 57.4
C5' C4' O4' C3' 170.4 117.9
C5' C4' O4' H4' 285.6 234.9
C3' C4' O4' H4' 115.2 117.0
O4' C4' C3' O3' 208.2 196.0
O4' C4' C3' C2' 330.7 317.4
O4' C4' C3' H3' 91.3 75.3
C4' O4' C1' C2' 26.1 333.3
C4' O4' C1' N9 268.3 213.8
C4' O4' C1' H1' 146.5 92.8
PA O3' C3' C4' 2.0 295.4
C3' C4' C5' H5'1 197.7 51.4
C3' C4' C5' H5'2 88.3 172.2
C5' C4' C3' O4' 190.7 236.9
C5' C4' C3' H4' 54.1 119.9
O4' C4' C3' H4' 223.4 243.0
C3' C4' O4' C1' 2.6 43.4
O3' C3' C4' C2' 237.5 238.6
O3' C3' C4' H3' 117.0 120.7
C2' C3' C4' H3' 239.4 242.1
C4' C3' C2' O2' 289.9 266.4
C4' C3' C2' C1' 41.8 25.5
C4' C3' C2' H2' 169.9 143.5
H4' C4' C5' H5'1 266.4 171.3
H4' C4' C5' H5'2 157.0 292.2
C5' C4' H4' O4' 104.6 128.5
C5' C4' H4' C3' 227.4 241.1
O4' C4' H4' C3' 122.7 112.6
H4' C4' O4' C1' 247.3 286.3
H4' C4' C3' O3' 344.8 313.0
H4' C4' C3' C2' 107.2 74.4
H4' C4' C3' H3' 227.8 192.3
C1' O4' C4' C3' 2.6 43.4
C1' O4' C4' H4' 247.3 286.3
C3' C2' C1' O4' 315.8 359.0
O2' C2' C1' O4' 76.9 117.6
O4' C1' C2' H2' 195.6 240.8
C2' C1' O4' N9 117.8 119.5
C2' C1' O4' H1' 239.6 240.5
N9 C1' O4' H1' 121.7 121.0
O4' C1' N9 C8 46.7 28.3
O4' C1' N9 C4 231.2 208.2
O3' C3' C4' H4' 344.8 313.0
C4' C3' O3' C2' 106.4 111.9
C4' C3' O3' H3' 229.7 239.6
C2' C3' O3' H3' 123.2 127.6
O3' C3' C2' O2' 41.9 21.9
O3' C3' C2' C1' 153.9 141.0
O3' C3' C2' H2' 281.9 259.0
C2' C3' C4' H4' 107.2 74.4
C4' C3' C2' O3' 247.9 244.5
C4' C3' C2' H3' 129.4 117.1
O4' C1' C2' C3' 315.8 359.0
O3' C3' C2' H3' 241.4 232.7
O2' C2' C3' C1' 248.1 240.9
O2' C2' C3' H2' 120.0 122.9
C3' C2' O2' HO2' 180.0 180.1
C1' C2' C3' H2' 231.9 242.0
C3' C2' C1' N9 63.0 118.5
C3' C2' C1' H1' 186.9 239.5
H3' C3' C4' H4' 227.8 192.3
C4' C3' H3' O3' 118.8 118.7
C4' C3' H3' C2' 246.9 248.6
O3' C3' H3' C2' 128.2 129.9
H3' C3' C2' O2' 160.5 149.3
H3' C3' C2' C1' 272.4 268.3
H3' C3' C2' H2' 40.5 26.4
O4' C1' C2' O2' 76.9 117.6
O2' C2' C3' H3' 160.5 149.3
C3' C2' O2' C1' 109.5 114.0
C3' C2' O2' H2' 238.0 237.1
C1' C2' O2' H2' 128.5 123.0
O2' C2' C1' N9 184.1 237.1
O2' C2' C1' H1' 308.1 358.2
O4' C1' C2' N9 252.8 240.5
O4' C1' C2' H1' 128.8 119.5
C1' C2' C3' H3' 272.4 268.3
C3' C2' C1' O2' 238.9 241.4
C3' C2' C1' H2' 120.2 118.2
O2' C2' C1' H2' 241.3 236.9
C1' C2' O2' HO2' 70.5 66.0
N9 C1' C2' H1' 236.1 239.0
C2' C1' N9 C8 297.1 270.4
C2' C1' N9 C4 121.5 90.3
H2' C2' C3' H3' 40.5 26.4
C3' C2' H2' O2' 126.5 122.9
C3' C2' H2' C1' 244.5 246.5
O2' C2' H2' C1' 118.0 123.6
H2' C2' O2' HO2' 302.0 303.0
H2' C2' C1' N9 302.8 0.3
H2' C2' C1' H1' 66.7 121.3
HO2' O2' C2' C1' 70.5 66.0
HO2' O2' C2' H2' 302.0 303.0
O4' C1' N9 C2' 109.7 117.9
O4' C1' N9 H1' 231.7 239.0
N9 C1' C2' H2' 302.8 0.3
C2' C1' N9 H1' 122.0 121.1
C8 N9 C1' C4 175.5 180.1
C1' N9 C8 N7 178.4 180.0
C1' N9 C8 H8 358.4 360.0
C1' N9 C4 C5 182.9 180.0
C1' N9 C4 N3 358.3 0.1
O4' C1' H1' C2' 241.6 242.1
O4' C1' H1' N9 115.9 121.0
H1' C1' C2' H2' 66.7 121.3
C2' C1' H1' N9 234.3 238.9
H1' C1' N9 C8 175.0 149.3
H1' C1' N9 C4 359.5 329.2
C8 N9 C1' H1' 175.0 149.3
C1' N9 C8 C4 184.4 179.9
C8 N9 C4 C5 6.0 359.9
C8 N9 C4 N3 181.5 180.0
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 C5 2.9 360.0
C4 N9 C1' H1' 359.5 329.2
C1' N9 C4 C8 176.8 180.1
C4 N9 C8 N7 354.0 0.1
C4 N9 C8 H8 174.0 180.0
N7 C5 C4 N9 355.5 0.1
C6 C5 C4 N9 177.2 180.0
C5 C4 N9 N3 184.6 179.9
C2 N3 C4 N9 187.5 180.0
N7 C8 N9 C4 354.0 0.1
N9 C8 N7 H8 180.0 179.9
C8 N7 C5 C6 179.2 180.1
C8 N7 C5 C4 1.1 360.0
H8 C8 N9 C4 174.0 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 182.9 180.0
N9 C4 C5 N7 355.5 0.1
C5 N7 C8 H8 182.9 180.0
C6 C5 N7 C4 178.1 180.1
N7 C5 C6 O6 357.5 359.9
N7 C5 C6 N1 177.7 179.7
N7 C5 C4 N3 180.6 180.0
N9 C4 C5 C6 177.2 180.0
N7 C5 C6 C4 182.0 179.9
C6 C5 C4 N3 2.3 359.9
O6 C6 C5 N1 179.8 180.2
C5 C6 N1 C2 3.4 0.5
C5 C6 N1 HN1 183.3 179.9
N9 C4 C5 N3 174.9 180.1
N7 C5 C4 C6 178.3 180.1
C4 C5 C6 O6 175.5 180.0
C4 C5 C6 N1 355.7 359.8
C2 N3 C4 C5 1.5 0.1
O6 C6 C5 C4 175.5 180.0
C5 C6 O6 N1 180.2 179.8
O6 C6 N1 C2 183.6 180.3
O6 C6 N1 HN1 3.5 359.7
N1 C6 C5 C4 355.7 359.8
C5 C6 N1 O6 179.8 180.2
C2 N1 C6 HN1 180.0 180.5
C6 N1 C2 N2 178.5 179.7
C6 N1 C2 N3 0.3 359.5
C6 N1 C2 HN1 180.0 179.5
N2 C2 N1 N3 178.2 180.2
N1 C2 N2 HN21 180.0 179.7
N1 C2 N2 HN22 54.7 359.5
N1 C2 N3 C4 357.2 0.2
C6 N1 HN1 C2 180.0 180.5
HN1 N1 C2 N2 358.5 0.2
HN1 N1 C2 N3 180.4 180.0
N2 C2 N1 HN1 358.5 0.2
N1 C2 N2 N3 181.7 179.8
N2 C2 N3 C4 179.2 180.0
HN21 N2 C2 HN22 125.3 180.2
N9 C4 N3 C2 187.5 180.0
C5 C4 N3 C2 1.5 0.1
N3 C2 N1 HN1 180.4 180.0
N1 C2 N3 N2 178.0 180.2
N3 C2 N2 HN21 358.3 359.9
N3 C2 N2 HN22 233.0 179.7
HN21 N2 C2 N3 358.3 359.9
C2 N2 HN21 HN22 234.7 179.8
HN22 N2 C2 N3 233.0 179.7
C2 N2 HN22 HN21 126.3 180.2
N9 C4 N3 C5 186.0 179.9