PDB Chemical Component PCB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PCB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.402 |
1.394 |
| C1 |
C6 |
1.401 |
1.392 |
| C1 |
C1' |
1.402 |
1.483 |
| C2 |
CL2 |
1.740 |
1.736 |
| C2 |
C3 |
1.402 |
1.382 |
| C3 |
C4 |
1.402 |
1.383 |
| C3 |
H3 |
1.081 |
1.080 |
| C4 |
C5 |
1.403 |
1.384 |
| C4 |
S |
1.773 |
1.761 |
| C5 |
CL5 |
1.739 |
1.736 |
| C5 |
C6 |
1.403 |
1.382 |
| C6 |
H6 |
1.080 |
1.080 |
| S |
O1 |
1.439 |
1.420 |
| S |
O2 |
1.440 |
1.420 |
| S |
CM |
1.809 |
1.813 |
| CM |
HM1 |
1.077 |
1.090 |
| CM |
HM2 |
1.079 |
1.090 |
| CM |
HM3 |
1.080 |
1.090 |
| C1' |
C2' |
1.401 |
1.394 |
| C1' |
C6' |
1.401 |
1.393 |
| C2' |
CL2' |
1.740 |
1.735 |
| C2' |
C3' |
1.402 |
1.382 |
| C3' |
C4' |
1.401 |
1.383 |
| C3' |
H3' |
1.080 |
1.080 |
| C4' |
C5' |
1.404 |
1.383 |
| C4' |
S' |
1.773 |
1.761 |
| C5' |
CL5' |
1.740 |
1.736 |
| C5' |
C6' |
1.402 |
1.381 |
| C6' |
H6' |
1.080 |
1.079 |
| S' |
O1' |
1.440 |
1.421 |
| S' |
O2' |
1.440 |
1.421 |
| S' |
CM' |
1.809 |
1.813 |
| CM' |
HM'1 |
1.077 |
1.090 |
| CM' |
HM'2 |
1.079 |
1.090 |
| CM' |
HM'3 |
1.079 |
1.090 |
Bond Angles for PCB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
120.0 |
119.8 |
| C2 |
C1 |
C1' |
120.0 |
120.1 |
| C1 |
C2 |
CL2 |
120.0 |
120.1 |
| C1 |
C2 |
C3 |
120.0 |
119.9 |
| C6 |
C1 |
C1' |
120.0 |
120.2 |
| C1 |
C6 |
C5 |
120.0 |
119.9 |
| C1 |
C6 |
H6 |
120.0 |
120.0 |
| C1 |
C1' |
C2' |
120.1 |
120.1 |
| C1 |
C1' |
C6' |
120.0 |
120.1 |
| CL2 |
C2 |
C3 |
120.0 |
120.0 |
| C2 |
C3 |
C4 |
120.1 |
120.1 |
| C2 |
C3 |
H3 |
120.0 |
120.0 |
| C4 |
C3 |
H3 |
119.9 |
119.9 |
| C3 |
C4 |
C5 |
119.9 |
120.2 |
| C3 |
C4 |
S |
119.9 |
119.9 |
| C5 |
C4 |
S |
120.2 |
119.9 |
| C4 |
C5 |
CL5 |
120.1 |
119.9 |
| C4 |
C5 |
C6 |
120.0 |
120.1 |
| C4 |
S |
O1 |
108.4 |
102.8 |
| C4 |
S |
O2 |
108.1 |
102.8 |
| C4 |
S |
CM |
104.0 |
103.2 |
| CL5 |
C5 |
C6 |
119.9 |
119.9 |
| C5 |
C6 |
H6 |
119.9 |
120.0 |
| O1 |
S |
O2 |
118.4 |
122.0 |
| O1 |
S |
CM |
108.7 |
111.6 |
| O2 |
S |
CM |
108.3 |
111.6 |
| S |
CM |
HM1 |
109.7 |
109.5 |
| S |
CM |
HM2 |
109.7 |
109.5 |
| S |
CM |
HM3 |
109.2 |
109.4 |
| HM1 |
CM |
HM2 |
109.3 |
109.5 |
| HM1 |
CM |
HM3 |
109.3 |
109.5 |
| HM2 |
CM |
HM3 |
109.6 |
109.5 |
| C2' |
C1' |
C6' |
120.0 |
119.8 |
| C1' |
C2' |
CL2' |
120.0 |
120.1 |
| C1' |
C2' |
C3' |
120.0 |
119.8 |
| C1' |
C6' |
C5' |
120.0 |
119.8 |
| C1' |
C6' |
H6' |
120.0 |
120.1 |
| CL2' |
C2' |
C3' |
120.0 |
120.1 |
| C2' |
C3' |
C4' |
120.1 |
120.1 |
| C2' |
C3' |
H3' |
120.0 |
119.9 |
| C4' |
C3' |
H3' |
120.0 |
120.0 |
| C3' |
C4' |
C5' |
119.9 |
120.2 |
| C3' |
C4' |
S' |
119.9 |
119.9 |
| C5' |
C4' |
S' |
120.2 |
119.9 |
| C4' |
C5' |
CL5' |
120.1 |
119.9 |
| C4' |
C5' |
C6' |
120.0 |
120.2 |
| C4' |
S' |
O1' |
108.4 |
102.8 |
| C4' |
S' |
O2' |
108.2 |
102.8 |
| C4' |
S' |
CM' |
104.0 |
103.2 |
| CL5' |
C5' |
C6' |
119.9 |
119.9 |
| C5' |
C6' |
H6' |
119.9 |
120.1 |
| O1' |
S' |
O2' |
118.3 |
122.0 |
| O1' |
S' |
CM' |
108.7 |
111.6 |
| O2' |
S' |
CM' |
108.3 |
111.6 |
| S' |
CM' |
HM'1 |
109.6 |
109.5 |
| S' |
CM' |
HM'2 |
109.7 |
109.5 |
| S' |
CM' |
HM'3 |
109.2 |
109.5 |
| HM'1 |
CM' |
HM'2 |
109.4 |
109.5 |
| HM'1 |
CM' |
HM'3 |
109.3 |
109.4 |
| HM'2 |
CM' |
HM'3 |
109.6 |
109.5 |
Torsion Angles for PCB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C1' |
180.0 |
180.1 |
| C2 |
C1 |
C6 |
C5 |
0.0 |
359.7 |
| C2 |
C1 |
C6 |
H6 |
180.0 |
180.0 |
| C2 |
C1 |
C1' |
C2' |
283.6 |
59.8 |
| C2 |
C1 |
C1' |
C6' |
103.6 |
240.0 |
| CL2 |
C2 |
C1 |
C3 |
179.9 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
360.0 |
359.9 |
| C1 |
C2 |
C3 |
H3 |
180.0 |
180.0 |
| C2 |
C1 |
C6 |
C1' |
180.0 |
179.9 |
| C6 |
C1 |
C2 |
CL2 |
179.9 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
0.0 |
0.1 |
| C6 |
C1 |
C1' |
C2' |
103.6 |
239.7 |
| C6 |
C1 |
C1' |
C6' |
283.6 |
59.9 |
| C4 |
C5 |
C6 |
C1 |
359.9 |
0.5 |
| CL5 |
C5 |
C6 |
C1 |
180.0 |
180.1 |
| C5 |
C6 |
C1 |
H6 |
180.1 |
179.8 |
| C2 |
C1 |
C1' |
C6 |
180.0 |
180.1 |
| C1' |
C1 |
C2 |
CL2 |
359.9 |
359.9 |
| C1' |
C1 |
C2 |
C3 |
180.0 |
180.0 |
| C1' |
C1 |
C6 |
C5 |
180.0 |
179.8 |
| C1' |
C1 |
C6 |
H6 |
359.9 |
0.1 |
| C2' |
C1' |
C1 |
C6' |
180.0 |
179.8 |
| C1 |
C1' |
C2' |
CL2' |
360.0 |
0.3 |
| C1 |
C1' |
C2' |
C3' |
180.1 |
179.7 |
| C1 |
C1' |
C6' |
C5' |
179.9 |
180.0 |
| C1 |
C1' |
C6' |
H6' |
0.0 |
360.0 |
| CL2 |
C2 |
C1 |
C6 |
179.9 |
180.0 |
| CL2 |
C2 |
C1 |
C1' |
359.9 |
359.9 |
| C1 |
C2 |
CL2 |
C3 |
180.1 |
180.0 |
| CL2 |
C2 |
C3 |
C4 |
180.1 |
180.0 |
| CL2 |
C2 |
C3 |
H3 |
0.1 |
0.1 |
| C3 |
C2 |
C1 |
C6 |
0.0 |
0.1 |
| C3 |
C2 |
C1 |
C1' |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
CL2 |
179.9 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| C2 |
C3 |
C4 |
C5 |
360.0 |
0.3 |
| C2 |
C3 |
C4 |
S |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
S |
179.9 |
180.3 |
| C3 |
C4 |
C5 |
CL5 |
180.0 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
0.1 |
359.5 |
| C3 |
C4 |
S |
O1 |
148.0 |
3.8 |
| C3 |
C4 |
S |
O2 |
18.5 |
236.2 |
| C3 |
C4 |
S |
CM |
263.5 |
120.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
| H3 |
C3 |
C4 |
C5 |
179.9 |
180.2 |
| H3 |
C3 |
C4 |
S |
0.0 |
359.9 |
| C1 |
C6 |
C5 |
C4 |
359.9 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
179.9 |
180.2 |
| C3 |
C4 |
C5 |
S |
180.1 |
179.7 |
| C5 |
C4 |
S |
O1 |
328.1 |
183.5 |
| C5 |
C4 |
S |
O2 |
198.6 |
56.0 |
| C5 |
C4 |
S |
CM |
83.6 |
299.8 |
| CL5 |
C5 |
C4 |
C6 |
179.9 |
180.4 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.2 |
| S |
C4 |
C3 |
H3 |
0.0 |
359.9 |
| C3 |
C4 |
S |
C5 |
179.9 |
180.3 |
| S |
C4 |
C5 |
CL5 |
359.9 |
0.2 |
| S |
C4 |
C5 |
C6 |
180.0 |
179.8 |
| O1 |
S |
C4 |
O2 |
129.5 |
127.6 |
| O1 |
S |
C4 |
CM |
244.5 |
243.8 |
| O2 |
S |
C4 |
CM |
115.0 |
116.2 |
| C4 |
S |
CM |
HM1 |
323.4 |
180.0 |
| C4 |
S |
CM |
HM2 |
203.4 |
300.0 |
| C4 |
S |
CM |
HM3 |
83.2 |
60.0 |
| C1 |
C6 |
C5 |
CL5 |
180.0 |
180.1 |
| CL5 |
C5 |
C4 |
S |
359.9 |
0.2 |
| C4 |
C5 |
CL5 |
C6 |
180.1 |
179.6 |
| CL5 |
C5 |
C6 |
H6 |
0.1 |
359.8 |
| C5 |
C6 |
C1 |
C1' |
180.0 |
179.8 |
| C1 |
C6 |
C5 |
H6 |
179.9 |
180.2 |
| C6 |
C5 |
C4 |
S |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
CL5 |
179.9 |
180.4 |
| H6 |
C6 |
C1 |
C1' |
359.9 |
0.1 |
| C1 |
C6 |
H6 |
C5 |
180.1 |
179.8 |
| C4 |
S |
O1 |
O2 |
236.4 |
245.7 |
| C4 |
S |
O1 |
CM |
112.4 |
110.0 |
| O2 |
S |
O1 |
CM |
236.0 |
224.2 |
| O1 |
S |
CM |
HM1 |
78.8 |
289.8 |
| O1 |
S |
CM |
HM2 |
318.7 |
49.7 |
| O1 |
S |
CM |
HM3 |
198.6 |
169.7 |
| C4 |
S |
O2 |
O1 |
123.7 |
114.3 |
| C4 |
S |
O2 |
CM |
247.9 |
250.0 |
| O1 |
S |
O2 |
CM |
124.2 |
135.8 |
| O2 |
S |
CM |
HM1 |
208.6 |
70.3 |
| O2 |
S |
CM |
HM2 |
88.5 |
190.2 |
| O2 |
S |
CM |
HM3 |
328.4 |
310.2 |
| C4 |
S |
CM |
O1 |
244.6 |
250.3 |
| C4 |
S |
CM |
O2 |
114.9 |
109.8 |
| O1 |
S |
CM |
O2 |
230.2 |
219.5 |
| HM1 |
CM |
S |
HM2 |
120.1 |
240.0 |
| HM1 |
CM |
S |
HM3 |
240.2 |
120.0 |
| HM2 |
CM |
S |
HM3 |
120.1 |
240.0 |
| S |
CM |
HM1 |
HM2 |
239.7 |
120.0 |
| S |
CM |
HM1 |
HM3 |
119.7 |
240.0 |
| HM2 |
CM |
HM1 |
HM3 |
240.0 |
120.0 |
| S |
CM |
HM2 |
HM1 |
120.3 |
240.0 |
| S |
CM |
HM2 |
HM3 |
240.1 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
119.8 |
240.0 |
| S |
CM |
HM3 |
HM1 |
240.0 |
120.0 |
| S |
CM |
HM3 |
HM2 |
120.2 |
240.0 |
| HM1 |
CM |
HM3 |
HM2 |
240.2 |
120.0 |
| C1 |
C1' |
C2' |
C6' |
180.0 |
180.2 |
| C2' |
C1' |
C6' |
C5' |
359.9 |
0.3 |
| C2' |
C1' |
C6' |
H6' |
180.0 |
180.2 |
| CL2' |
C2' |
C1' |
C3' |
179.9 |
180.5 |
| C1' |
C2' |
C3' |
C4' |
359.9 |
0.5 |
| C1' |
C2' |
C3' |
H3' |
180.0 |
180.3 |
| C1 |
C1' |
C6' |
C2' |
180.0 |
179.8 |
| C6' |
C1' |
C2' |
CL2' |
180.0 |
180.0 |
| C6' |
C1' |
C2' |
C3' |
0.1 |
359.5 |
| C4' |
C5' |
C6' |
C1' |
0.0 |
360.0 |
| CL5' |
C5' |
C6' |
C1' |
180.0 |
180.0 |
| C5' |
C6' |
C1' |
H6' |
179.9 |
180.0 |
| CL2' |
C2' |
C1' |
C6' |
180.0 |
180.0 |
| C1' |
C2' |
CL2' |
C3' |
180.1 |
179.5 |
| CL2' |
C2' |
C3' |
C4' |
180.0 |
180.0 |
| CL2' |
C2' |
C3' |
H3' |
0.1 |
359.8 |
| C3' |
C2' |
C1' |
C6' |
0.1 |
359.5 |
| C1' |
C2' |
C3' |
CL2' |
179.9 |
180.5 |
| C4' |
C3' |
C2' |
H3' |
179.9 |
180.2 |
| C2' |
C3' |
C4' |
C5' |
0.0 |
359.7 |
| C2' |
C3' |
C4' |
S' |
180.1 |
179.8 |
| C2' |
C3' |
C4' |
H3' |
180.1 |
179.8 |
| C5' |
C4' |
C3' |
S' |
180.0 |
179.9 |
| C3' |
C4' |
C5' |
CL5' |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
360.0 |
0.1 |
| C3' |
C4' |
S' |
O1' |
148.0 |
236.2 |
| C3' |
C4' |
S' |
O2' |
18.5 |
3.8 |
| C3' |
C4' |
S' |
CM' |
263.5 |
120.0 |
| C2' |
C3' |
H3' |
C4' |
179.9 |
180.2 |
| H3' |
C3' |
C4' |
C5' |
179.9 |
179.9 |
| H3' |
C3' |
C4' |
S' |
360.0 |
360.0 |
| C1' |
C6' |
C5' |
C4' |
0.0 |
360.0 |
| C5' |
C4' |
C3' |
H3' |
179.9 |
179.9 |
| C3' |
C4' |
C5' |
S' |
180.0 |
180.1 |
| C5' |
C4' |
S' |
O1' |
328.0 |
56.2 |
| C5' |
C4' |
S' |
O2' |
198.6 |
183.8 |
| C5' |
C4' |
S' |
CM' |
83.6 |
300.0 |
| CL5' |
C5' |
C4' |
C6' |
180.0 |
179.9 |
| C4' |
C5' |
C6' |
H6' |
179.9 |
180.0 |
| S' |
C4' |
C3' |
H3' |
360.0 |
360.0 |
| C3' |
C4' |
S' |
C5' |
180.0 |
179.9 |
| S' |
C4' |
C5' |
CL5' |
360.0 |
359.9 |
| S' |
C4' |
C5' |
C6' |
180.0 |
180.0 |
| O1' |
S' |
C4' |
O2' |
129.5 |
232.4 |
| O1' |
S' |
C4' |
CM' |
244.5 |
116.2 |
| O2' |
S' |
C4' |
CM' |
115.0 |
243.8 |
| C4' |
S' |
CM' |
HM'1 |
323.5 |
180.0 |
| C4' |
S' |
CM' |
HM'2 |
203.4 |
300.0 |
| C4' |
S' |
CM' |
HM'3 |
83.3 |
60.0 |
| C1' |
C6' |
C5' |
CL5' |
180.0 |
180.0 |
| CL5' |
C5' |
C4' |
S' |
360.0 |
359.9 |
| C4' |
C5' |
CL5' |
C6' |
180.0 |
180.1 |
| CL5' |
C5' |
C6' |
H6' |
359.9 |
0.1 |
| C1' |
C6' |
C5' |
H6' |
180.1 |
180.0 |
| C6' |
C5' |
C4' |
S' |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
CL5' |
180.0 |
179.9 |
| C1' |
C6' |
H6' |
C5' |
179.9 |
180.0 |
| C4' |
S' |
O1' |
O2' |
236.5 |
114.3 |
| C4' |
S' |
O1' |
CM' |
112.4 |
250.0 |
| O2' |
S' |
O1' |
CM' |
236.0 |
135.7 |
| O1' |
S' |
CM' |
HM'1 |
78.8 |
70.2 |
| O1' |
S' |
CM' |
HM'2 |
318.8 |
190.2 |
| O1' |
S' |
CM' |
HM'3 |
198.6 |
310.2 |
| C4' |
S' |
O2' |
O1' |
123.7 |
245.7 |
| C4' |
S' |
O2' |
CM' |
247.9 |
110.0 |
| O1' |
S' |
O2' |
CM' |
124.2 |
224.3 |
| O2' |
S' |
CM' |
HM'1 |
208.6 |
289.7 |
| O2' |
S' |
CM' |
HM'2 |
88.5 |
49.8 |
| O2' |
S' |
CM' |
HM'3 |
328.4 |
169.8 |
| C4' |
S' |
CM' |
O1' |
244.7 |
109.8 |
| C4' |
S' |
CM' |
O2' |
114.9 |
250.2 |
| O1' |
S' |
CM' |
O2' |
230.2 |
140.4 |
| HM'1 |
CM' |
S' |
HM'2 |
120.1 |
240.0 |
| HM'1 |
CM' |
S' |
HM'3 |
240.2 |
120.0 |
| HM'2 |
CM' |
S' |
HM'3 |
120.1 |
240.0 |
| S' |
CM' |
HM'1 |
HM'2 |
239.7 |
120.0 |
| S' |
CM' |
HM'1 |
HM'3 |
119.7 |
240.0 |
| HM'2 |
CM' |
HM'1 |
HM'3 |
240.0 |
120.0 |
| S' |
CM' |
HM'2 |
HM'1 |
120.2 |
239.9 |
| S' |
CM' |
HM'2 |
HM'3 |
240.1 |
120.0 |
| HM'1 |
CM' |
HM'2 |
HM'3 |
119.8 |
240.0 |
| S' |
CM' |
HM'3 |
HM'1 |
240.1 |
120.0 |
| S' |
CM' |
HM'3 |
HM'2 |
120.2 |
240.0 |
| HM'1 |
CM' |
HM'3 |
HM'2 |
240.2 |
120.0 |