PDB Chemical Component PBG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PBG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CHA |
C1A |
1.552 |
1.507 |
| CHA |
N1 |
1.451 |
1.468 |
| CHA |
HHA2 |
1.115 |
1.090 |
| CHA |
HHA1 |
1.115 |
1.090 |
| C1A |
C2A |
1.516 |
1.348 |
| C1A |
NA |
1.468 |
1.364 |
| C2A |
C3A |
1.511 |
1.409 |
| C2A |
C5A |
1.564 |
1.506 |
| C3A |
C4A |
1.531 |
1.348 |
| C3A |
C7A |
1.562 |
1.506 |
| C4A |
NA |
1.480 |
1.363 |
| C4A |
H4A1 |
1.103 |
1.080 |
| NA |
HA |
1.020 |
0.970 |
| C5A |
C6A |
1.477 |
1.507 |
| C5A |
H5A2 |
1.115 |
1.090 |
| C5A |
H5A1 |
1.115 |
1.090 |
| C6A |
O1A |
1.376 |
1.207 |
| C6A |
O2A |
1.364 |
1.342 |
| O2A |
H2AO |
0.950 |
0.966 |
| C7A |
C8A |
1.524 |
1.529 |
| C7A |
H7A2 |
1.115 |
1.090 |
| C7A |
H7A1 |
1.114 |
1.090 |
| C8A |
C9A |
1.517 |
1.506 |
| C8A |
H8A2 |
1.115 |
1.090 |
| C8A |
H8A1 |
1.115 |
1.089 |
| C9A |
O3A |
1.392 |
1.207 |
| C9A |
O4A |
1.387 |
1.342 |
| O4A |
H4AO |
0.951 |
0.967 |
| N1 |
H12 |
1.020 |
1.009 |
| N1 |
H11 |
1.020 |
1.009 |
Bond Angles for PBG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1A |
CHA |
N1 |
108.6 |
109.6 |
| C1A |
CHA |
HHA2 |
112.5 |
109.5 |
| C1A |
CHA |
HHA1 |
112.5 |
109.4 |
| CHA |
C1A |
C2A |
124.7 |
125.9 |
| CHA |
C1A |
NA |
125.0 |
125.8 |
| N1 |
CHA |
HHA2 |
112.6 |
109.5 |
| N1 |
CHA |
HHA1 |
112.5 |
109.5 |
| CHA |
N1 |
H12 |
108.6 |
106.8 |
| CHA |
N1 |
H11 |
112.5 |
106.7 |
| HHA2 |
CHA |
HHA1 |
97.9 |
109.4 |
| C2A |
C1A |
NA |
110.2 |
108.2 |
| C1A |
C2A |
C3A |
105.2 |
107.4 |
| C1A |
C2A |
C5A |
127.6 |
126.3 |
| C1A |
NA |
C4A |
108.8 |
108.7 |
| C1A |
NA |
HA |
125.3 |
125.6 |
| C3A |
C2A |
C5A |
126.8 |
126.3 |
| C2A |
C3A |
C4A |
108.6 |
107.4 |
| C2A |
C3A |
C7A |
124.7 |
126.3 |
| C2A |
C5A |
C6A |
112.8 |
109.4 |
| C2A |
C5A |
H5A2 |
111.0 |
109.4 |
| C2A |
C5A |
H5A1 |
111.0 |
109.5 |
| C4A |
C3A |
C7A |
126.7 |
126.3 |
| C3A |
C4A |
NA |
107.0 |
108.2 |
| C3A |
C4A |
H4A1 |
127.8 |
125.9 |
| C3A |
C7A |
C8A |
110.8 |
109.5 |
| C3A |
C7A |
H7A2 |
111.7 |
109.5 |
| C3A |
C7A |
H7A1 |
111.7 |
109.5 |
| NA |
C4A |
H4A1 |
125.2 |
125.8 |
| C4A |
NA |
HA |
125.9 |
125.7 |
| C6A |
C5A |
H5A2 |
111.0 |
109.5 |
| C6A |
C5A |
H5A1 |
111.0 |
109.5 |
| C5A |
C6A |
O1A |
117.3 |
120.0 |
| C5A |
C6A |
O2A |
123.9 |
120.0 |
| H5A2 |
C5A |
H5A1 |
99.3 |
109.4 |
| O1A |
C6A |
O2A |
118.8 |
120.0 |
| C6A |
O2A |
H2AO |
123.9 |
120.0 |
| C8A |
C7A |
H7A2 |
111.7 |
109.5 |
| C8A |
C7A |
H7A1 |
111.7 |
109.5 |
| C7A |
C8A |
C9A |
112.2 |
109.5 |
| C7A |
C8A |
H8A2 |
111.2 |
109.4 |
| C7A |
C8A |
H8A1 |
111.2 |
109.4 |
| H7A2 |
C7A |
H7A1 |
98.7 |
109.5 |
| C9A |
C8A |
H8A2 |
111.2 |
109.5 |
| C9A |
C8A |
H8A1 |
111.2 |
109.5 |
| C8A |
C9A |
O3A |
125.2 |
120.0 |
| C8A |
C9A |
O4A |
122.2 |
120.0 |
| H8A2 |
C8A |
H8A1 |
99.1 |
109.4 |
| O3A |
C9A |
O4A |
112.6 |
119.9 |
| C9A |
O4A |
H4AO |
122.3 |
120.0 |
| H12 |
N1 |
H11 |
112.6 |
106.7 |
Torsion Angles for PBG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
CHA |
C1A |
HHA2 |
234.7 |
120.1 |
| N1 |
CHA |
C1A |
HHA1 |
125.3 |
240.0 |
| C1A |
CHA |
N1 |
H12 |
180.0 |
180.0 |
| C1A |
CHA |
N1 |
H11 |
54.7 |
293.8 |
| HHA2 |
CHA |
C1A |
HHA1 |
250.6 |
119.9 |
| C2A |
C1A |
CHA |
NA |
180.1 |
179.7 |
| CHA |
C1A |
C2A |
C3A |
176.5 |
179.9 |
| CHA |
C1A |
C2A |
C5A |
349.7 |
0.3 |
| CHA |
C1A |
NA |
C4A |
182.7 |
180.0 |
| CHA |
C1A |
NA |
HA |
2.7 |
0.1 |
| C1A |
CHA |
N1 |
HHA2 |
125.2 |
239.9 |
| C1A |
CHA |
N1 |
HHA1 |
234.8 |
120.0 |
| N1 |
CHA |
C1A |
C2A |
180.0 |
179.7 |
| N1 |
CHA |
C1A |
NA |
359.9 |
0.0 |
| HHA2 |
CHA |
N1 |
HHA1 |
109.5 |
240.0 |
| H12 |
N1 |
CHA |
H11 |
125.3 |
246.2 |
| C1A |
CHA |
HHA2 |
N1 |
236.9 |
120.1 |
| C1A |
CHA |
HHA2 |
HHA1 |
118.4 |
240.1 |
| HHA2 |
CHA |
C1A |
C2A |
305.3 |
59.6 |
| HHA2 |
CHA |
C1A |
NA |
125.2 |
239.9 |
| N1 |
CHA |
HHA2 |
HHA1 |
241.5 |
120.0 |
| HHA2 |
CHA |
N1 |
H12 |
54.8 |
300.1 |
| HHA2 |
CHA |
N1 |
H11 |
289.5 |
53.9 |
| C1A |
CHA |
HHA1 |
N1 |
123.1 |
239.9 |
| C1A |
CHA |
HHA1 |
HHA2 |
241.6 |
119.9 |
| HHA1 |
CHA |
C1A |
C2A |
54.8 |
299.7 |
| HHA1 |
CHA |
C1A |
NA |
234.7 |
120.0 |
| N1 |
CHA |
HHA1 |
HHA2 |
118.5 |
240.0 |
| HHA1 |
CHA |
N1 |
H12 |
305.3 |
60.0 |
| HHA1 |
CHA |
N1 |
H11 |
179.9 |
173.8 |
| C2A |
C1A |
CHA |
N1 |
180.0 |
179.7 |
| C2A |
C1A |
CHA |
HHA2 |
305.3 |
59.6 |
| C2A |
C1A |
CHA |
HHA1 |
54.8 |
299.7 |
| CHA |
C1A |
C2A |
NA |
179.9 |
180.3 |
| C2A |
C1A |
NA |
C4A |
2.7 |
0.3 |
| C2A |
C1A |
NA |
HA |
182.7 |
180.3 |
| C3A |
C2A |
C1A |
C5A |
186.9 |
179.5 |
| C1A |
C2A |
C3A |
C4A |
2.8 |
0.4 |
| C1A |
C2A |
C3A |
C7A |
181.2 |
180.2 |
| C1A |
C2A |
C5A |
C6A |
66.1 |
269.5 |
| C1A |
C2A |
C5A |
H5A2 |
191.3 |
29.5 |
| C1A |
C2A |
C5A |
H5A1 |
300.7 |
149.5 |
| NA |
C1A |
CHA |
N1 |
359.9 |
0.0 |
| NA |
C1A |
CHA |
HHA2 |
125.2 |
239.9 |
| NA |
C1A |
CHA |
HHA1 |
234.7 |
120.0 |
| CHA |
C1A |
NA |
C2A |
180.1 |
179.7 |
| NA |
C1A |
C2A |
C3A |
356.6 |
359.6 |
| NA |
C1A |
C2A |
C5A |
169.8 |
180.1 |
| C3A |
C4A |
NA |
C1A |
359.2 |
360.0 |
| C1A |
NA |
C4A |
H4A1 |
179.2 |
180.0 |
| C4A |
NA |
C1A |
HA |
180.0 |
180.0 |
| C3A |
C2A |
C1A |
NA |
356.6 |
359.6 |
| C1A |
C2A |
C3A |
C5A |
173.2 |
180.5 |
| C3A |
C2A |
C5A |
C6A |
237.8 |
90.1 |
| C3A |
C2A |
C5A |
H5A2 |
3.1 |
210.1 |
| C3A |
C2A |
C5A |
H5A1 |
112.5 |
330.0 |
| C4A |
C3A |
C2A |
C7A |
181.6 |
180.2 |
| C2A |
C3A |
C4A |
NA |
358.7 |
359.8 |
| C2A |
C3A |
C4A |
H4A1 |
178.7 |
179.7 |
| C2A |
C3A |
C7A |
C8A |
216.8 |
270.3 |
| C2A |
C3A |
C7A |
H7A2 |
342.1 |
30.3 |
| C2A |
C3A |
C7A |
H7A1 |
91.6 |
150.3 |
| C5A |
C2A |
C1A |
NA |
169.8 |
180.1 |
| C1A |
C2A |
C5A |
C3A |
188.3 |
179.5 |
| C5A |
C2A |
C3A |
C4A |
189.6 |
179.9 |
| C5A |
C2A |
C3A |
C7A |
8.0 |
359.7 |
| C6A |
C5A |
C2A |
H5A2 |
234.7 |
240.0 |
| C6A |
C5A |
C2A |
H5A1 |
125.3 |
120.1 |
| C2A |
C5A |
C6A |
O1A |
359.9 |
359.9 |
| C2A |
C5A |
C6A |
O2A |
180.0 |
180.0 |
| H5A2 |
C5A |
C2A |
H5A1 |
250.6 |
240.1 |
| C1A |
NA |
C4A |
C3A |
359.2 |
360.0 |
| C4A |
C3A |
C2A |
C5A |
189.6 |
179.9 |
| C2A |
C3A |
C4A |
C7A |
178.3 |
179.8 |
| C4A |
C3A |
C7A |
C8A |
34.8 |
90.0 |
| C4A |
C3A |
C7A |
H7A2 |
160.1 |
210.0 |
| C4A |
C3A |
C7A |
H7A1 |
269.6 |
330.0 |
| NA |
C4A |
C3A |
H4A1 |
180.0 |
180.1 |
| C3A |
C4A |
NA |
HA |
179.2 |
179.9 |
| C7A |
C3A |
C2A |
C5A |
8.0 |
359.7 |
| C2A |
C3A |
C7A |
C4A |
181.9 |
180.3 |
| C7A |
C3A |
C4A |
NA |
180.4 |
180.0 |
| C7A |
C3A |
C4A |
H4A1 |
0.4 |
360.0 |
| C8A |
C7A |
C3A |
H7A2 |
234.7 |
240.0 |
| C8A |
C7A |
C3A |
H7A1 |
125.2 |
120.0 |
| C3A |
C7A |
C8A |
C9A |
148.0 |
180.0 |
| C3A |
C7A |
C8A |
H8A2 |
273.3 |
300.0 |
| C3A |
C7A |
C8A |
H8A1 |
22.7 |
60.0 |
| H7A2 |
C7A |
C3A |
H7A1 |
250.5 |
240.0 |
| C1A |
NA |
C4A |
HA |
180.0 |
180.0 |
| NA |
C4A |
C3A |
C7A |
180.4 |
180.0 |
| C3A |
C4A |
NA |
H4A1 |
180.0 |
179.9 |
| H4A1 |
C4A |
C3A |
C7A |
0.4 |
360.0 |
| C3A |
C4A |
H4A1 |
NA |
180.0 |
180.1 |
| H4A1 |
C4A |
NA |
HA |
359.2 |
360.0 |
| C1A |
NA |
HA |
C4A |
180.0 |
179.9 |
| HA |
NA |
C4A |
H4A1 |
359.2 |
360.0 |
| C2A |
C5A |
C6A |
H5A2 |
125.2 |
119.9 |
| C2A |
C5A |
C6A |
H5A1 |
234.7 |
239.9 |
| H5A2 |
C5A |
C6A |
H5A1 |
109.5 |
120.0 |
| O1A |
C6A |
C5A |
O2A |
179.9 |
180.0 |
| C5A |
C6A |
O2A |
H2AO |
180.0 |
180.0 |
| C2A |
C5A |
H5A2 |
C6A |
233.7 |
240.0 |
| C2A |
C5A |
H5A2 |
H5A1 |
116.8 |
120.0 |
| C6A |
C5A |
H5A2 |
H5A1 |
243.1 |
240.0 |
| H5A2 |
C5A |
C6A |
O1A |
234.6 |
240.0 |
| H5A2 |
C5A |
C6A |
O2A |
54.8 |
60.0 |
| C2A |
C5A |
H5A1 |
C6A |
126.3 |
120.0 |
| C2A |
C5A |
H5A1 |
H5A2 |
243.2 |
240.1 |
| C6A |
C5A |
H5A1 |
H5A2 |
116.9 |
120.0 |
| H5A1 |
C5A |
C6A |
O1A |
125.1 |
120.0 |
| H5A1 |
C5A |
C6A |
O2A |
305.3 |
300.0 |
| O1A |
C6A |
C5A |
H5A2 |
234.6 |
240.0 |
| O1A |
C6A |
C5A |
H5A1 |
125.1 |
120.0 |
| C5A |
C6A |
O1A |
O2A |
180.1 |
180.0 |
| O1A |
C6A |
O2A |
H2AO |
0.1 |
0.1 |
| O2A |
C6A |
C5A |
H5A2 |
54.8 |
60.0 |
| O2A |
C6A |
C5A |
H5A1 |
305.3 |
300.0 |
| C5A |
C6A |
O2A |
O1A |
179.9 |
180.0 |
| C3A |
C7A |
C8A |
H7A2 |
125.3 |
120.0 |
| C3A |
C7A |
C8A |
H7A1 |
234.7 |
240.0 |
| H7A2 |
C7A |
C8A |
H7A1 |
109.4 |
120.0 |
| C9A |
C8A |
C7A |
H8A2 |
234.7 |
240.0 |
| C9A |
C8A |
C7A |
H8A1 |
125.2 |
120.0 |
| C7A |
C8A |
C9A |
O3A |
359.8 |
0.0 |
| C7A |
C8A |
C9A |
O4A |
180.0 |
180.0 |
| H8A2 |
C8A |
C7A |
H8A1 |
250.5 |
240.1 |
| C3A |
C7A |
H7A2 |
C8A |
235.2 |
240.0 |
| C3A |
C7A |
H7A2 |
H7A1 |
117.6 |
120.0 |
| C8A |
C7A |
H7A2 |
H7A1 |
242.4 |
240.0 |
| H7A2 |
C7A |
C8A |
C9A |
22.7 |
60.0 |
| H7A2 |
C7A |
C8A |
H8A2 |
148.0 |
180.0 |
| H7A2 |
C7A |
C8A |
H8A1 |
257.4 |
300.0 |
| C3A |
C7A |
H7A1 |
C8A |
124.8 |
120.0 |
| C3A |
C7A |
H7A1 |
H7A2 |
242.3 |
240.0 |
| C8A |
C7A |
H7A1 |
H7A2 |
117.6 |
120.0 |
| H7A1 |
C7A |
C8A |
C9A |
273.3 |
300.0 |
| H7A1 |
C7A |
C8A |
H8A2 |
38.5 |
60.1 |
| H7A1 |
C7A |
C8A |
H8A1 |
148.0 |
180.0 |
| C9A |
C8A |
C7A |
H7A2 |
22.7 |
60.0 |
| C9A |
C8A |
C7A |
H7A1 |
273.3 |
300.0 |
| C7A |
C8A |
C9A |
H8A2 |
125.3 |
120.0 |
| C7A |
C8A |
C9A |
H8A1 |
234.7 |
240.0 |
| H8A2 |
C8A |
C9A |
H8A1 |
109.4 |
120.0 |
| O3A |
C9A |
C8A |
O4A |
179.8 |
180.1 |
| C8A |
C9A |
O4A |
H4AO |
180.0 |
180.0 |
| H8A2 |
C8A |
C7A |
H7A2 |
148.0 |
180.0 |
| H8A2 |
C8A |
C7A |
H7A1 |
38.5 |
60.1 |
| C7A |
C8A |
H8A2 |
C9A |
234.1 |
240.0 |
| C7A |
C8A |
H8A2 |
H8A1 |
117.1 |
119.9 |
| C9A |
C8A |
H8A2 |
H8A1 |
243.0 |
240.0 |
| H8A2 |
C8A |
C9A |
O3A |
234.5 |
240.0 |
| H8A2 |
C8A |
C9A |
O4A |
54.7 |
60.0 |
| H8A1 |
C8A |
C7A |
H7A2 |
257.4 |
300.0 |
| H8A1 |
C8A |
C7A |
H7A1 |
148.0 |
180.0 |
| C7A |
C8A |
H8A1 |
C9A |
125.8 |
120.0 |
| C7A |
C8A |
H8A1 |
H8A2 |
242.9 |
240.1 |
| C9A |
C8A |
H8A1 |
H8A2 |
117.0 |
120.0 |
| H8A1 |
C8A |
C9A |
O3A |
125.1 |
120.0 |
| H8A1 |
C8A |
C9A |
O4A |
305.3 |
300.0 |
| O3A |
C9A |
C8A |
H8A2 |
234.5 |
240.0 |
| O3A |
C9A |
C8A |
H8A1 |
125.1 |
120.0 |
| C8A |
C9A |
O3A |
O4A |
180.2 |
179.9 |
| O3A |
C9A |
O4A |
H4AO |
0.2 |
359.9 |
| O4A |
C9A |
C8A |
H8A2 |
54.7 |
60.0 |
| O4A |
C9A |
C8A |
H8A1 |
305.3 |
300.0 |
| C8A |
C9A |
O4A |
O3A |
179.8 |
180.1 |
| H12 |
N1 |
CHA |
HHA2 |
54.8 |
300.1 |
| H12 |
N1 |
CHA |
HHA1 |
305.3 |
60.0 |
| CHA |
N1 |
H12 |
H11 |
234.7 |
113.8 |
| H11 |
N1 |
CHA |
HHA2 |
289.5 |
53.9 |
| H11 |
N1 |
CHA |
HHA1 |
179.9 |
173.8 |
| CHA |
N1 |
H11 |
H12 |
123.2 |
246.2 |