PDB Chemical Component PBF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PBF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.450 |
1.441 |
N |
H |
1.020 |
1.005 |
N |
H2 |
1.019 |
1.007 |
C |
O |
|
1.227 |
C |
CA |
1.505 |
1.521 |
C |
OXT |
1.326 |
1.354 |
CA |
CB |
1.520 |
1.535 |
CA |
HA |
1.116 |
1.096 |
CB |
CG |
1.496 |
1.510 |
CB |
HB2 |
1.114 |
1.097 |
CB |
HB3 |
1.115 |
1.099 |
CG |
CD1 |
1.389 |
1.386 |
CG |
CD2 |
1.388 |
1.386 |
CD1 |
CE1 |
1.402 |
1.395 |
CD1 |
HD1 |
1.103 |
1.086 |
CD2 |
CE2 |
1.397 |
1.395 |
CD2 |
HD2 |
1.103 |
1.086 |
CE1 |
CZ |
1.390 |
1.395 |
CE1 |
HE1 |
1.102 |
1.086 |
CE2 |
CZ |
1.394 |
1.394 |
CE2 |
HE2 |
1.103 |
1.087 |
CZ |
CN1 |
1.524 |
1.455 |
CN1 |
ON2 |
1.226 |
1.240 |
CN1 |
CT |
1.510 |
1.494 |
CT |
CI1 |
1.398 |
1.375 |
CT |
CI2 |
1.389 |
1.375 |
CI1 |
CK1 |
1.395 |
1.395 |
CI1 |
HI1 |
1.103 |
1.088 |
CI2 |
CK2 |
1.385 |
1.395 |
CI2 |
HI2 |
1.104 |
1.087 |
CK1 |
CL |
1.395 |
1.395 |
CK1 |
HK1 |
1.102 |
1.086 |
CK2 |
CL |
1.398 |
1.395 |
CK2 |
HK2 |
1.104 |
1.086 |
CL |
HCL |
1.103 |
1.086 |
OXT |
HXT |
0.949 |
0.980 |
Bond Angles for PBF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
109.2 |
119.0 |
CA |
N |
H2 |
112.3 |
119.0 |
N |
CA |
C |
109.3 |
111.2 |
N |
CA |
CB |
110.8 |
111.1 |
N |
CA |
HA |
109.1 |
106.2 |
H |
N |
H2 |
112.3 |
120.6 |
O |
C |
CA |
|
123.0 |
O |
C |
OXT |
|
122.2 |
CA |
C |
OXT |
115.1 |
114.8 |
C |
CA |
CB |
110.5 |
110.0 |
C |
CA |
HA |
109.4 |
106.9 |
C |
OXT |
HXT |
65.2 |
114.9 |
CB |
CA |
HA |
107.8 |
111.3 |
CA |
CB |
CG |
113.0 |
113.0 |
CA |
CB |
HB2 |
110.9 |
110.4 |
CA |
CB |
HB3 |
110.9 |
110.1 |
CG |
CB |
HB2 |
110.9 |
108.1 |
CG |
CB |
HB3 |
110.9 |
109.7 |
CB |
CG |
CD1 |
120.5 |
119.3 |
CB |
CG |
CD2 |
120.4 |
119.3 |
HB2 |
CB |
HB3 |
99.4 |
105.2 |
CD1 |
CG |
CD2 |
119.0 |
121.3 |
CG |
CD1 |
CE1 |
120.6 |
119.3 |
CG |
CD1 |
HD1 |
119.3 |
121.1 |
CG |
CD2 |
CE2 |
120.5 |
119.3 |
CG |
CD2 |
HD2 |
119.5 |
121.2 |
CE1 |
CD1 |
HD1 |
120.1 |
119.5 |
CD1 |
CE1 |
CZ |
120.4 |
120.0 |
CD1 |
CE1 |
HE1 |
120.3 |
119.3 |
CE2 |
CD2 |
HD2 |
120.0 |
119.5 |
CD2 |
CE2 |
CZ |
120.7 |
120.0 |
CD2 |
CE2 |
HE2 |
119.8 |
119.3 |
CZ |
CE1 |
HE1 |
119.3 |
120.7 |
CE1 |
CZ |
CE2 |
118.8 |
120.0 |
CE1 |
CZ |
CN1 |
121.1 |
120.0 |
CZ |
CE2 |
HE2 |
119.6 |
120.7 |
CE2 |
CZ |
CN1 |
120.1 |
120.0 |
CZ |
CN1 |
ON2 |
120.4 |
120.3 |
CZ |
CN1 |
CT |
121.2 |
122.4 |
ON2 |
CN1 |
CT |
118.2 |
117.3 |
CN1 |
CT |
CI1 |
122.0 |
118.5 |
CN1 |
CT |
CI2 |
118.7 |
118.6 |
CI1 |
CT |
CI2 |
119.3 |
122.9 |
CT |
CI1 |
CK1 |
120.8 |
118.6 |
CT |
CI1 |
HI1 |
119.7 |
122.0 |
CT |
CI2 |
CK2 |
120.5 |
118.6 |
CT |
CI2 |
HI2 |
119.9 |
122.1 |
CK1 |
CI1 |
HI1 |
119.5 |
119.4 |
CI1 |
CK1 |
CL |
119.3 |
119.9 |
CI1 |
CK1 |
HK1 |
120.3 |
120.0 |
CK2 |
CI2 |
HI2 |
119.6 |
119.3 |
CI2 |
CK2 |
CL |
120.2 |
120.0 |
CI2 |
CK2 |
HK2 |
119.4 |
120.0 |
CL |
CK1 |
HK1 |
120.4 |
120.1 |
CK1 |
CL |
CK2 |
119.9 |
120.0 |
CK1 |
CL |
HCL |
120.0 |
120.0 |
CL |
CK2 |
HK2 |
120.4 |
120.0 |
CK2 |
CL |
HCL |
120.1 |
120.0 |
Torsion Angles for PBF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
125.3 |
166.6 |
O |
C |
CA |
N |
|
325.5 |
N |
CA |
C |
OXT |
134.9 |
145.1 |
C |
CA |
N |
CB |
122.0 |
122.8 |
C |
CA |
N |
HA |
240.5 |
244.0 |
CB |
CA |
N |
HA |
118.5 |
121.2 |
N |
CA |
CB |
CG |
300.4 |
201.8 |
N |
CA |
CB |
HB2 |
65.7 |
323.0 |
N |
CA |
CB |
HB3 |
175.2 |
78.8 |
CA |
N |
H |
H2 |
234.7 |
193.6 |
H |
N |
CA |
C |
180.0 |
267.1 |
H |
N |
CA |
CB |
58.0 |
144.3 |
H |
N |
CA |
HA |
299.6 |
23.0 |
CA |
N |
H2 |
H |
123.6 |
166.4 |
H2 |
N |
CA |
C |
54.7 |
100.5 |
H2 |
N |
CA |
CB |
292.7 |
337.6 |
H2 |
N |
CA |
HA |
174.3 |
216.4 |
N |
CA |
C |
O |
|
325.5 |
CA |
C |
O |
OXT |
|
179.6 |
O |
C |
CA |
CB |
|
89.0 |
O |
C |
CA |
HA |
|
210.0 |
O |
C |
OXT |
HXT |
|
0.1 |
C |
CA |
N |
H |
180.0 |
267.1 |
C |
CA |
N |
H2 |
54.7 |
100.5 |
N |
CA |
C |
CB |
237.8 |
236.5 |
N |
CA |
C |
HA |
119.3 |
115.5 |
O |
C |
CA |
OXT |
|
180.4 |
CA |
C |
OXT |
HXT |
150.8 |
180.4 |
CB |
CA |
C |
HA |
241.5 |
239.0 |
C |
CA |
CB |
CG |
179.2 |
78.3 |
C |
CA |
CB |
HB2 |
304.4 |
199.4 |
C |
CA |
CB |
HB3 |
53.9 |
315.2 |
O |
C |
OXT |
CA |
|
179.6 |
OXT |
C |
CA |
CB |
257.0 |
268.6 |
OXT |
C |
CA |
HA |
15.5 |
29.6 |
CB |
CA |
N |
H |
58.0 |
144.3 |
CB |
CA |
N |
H2 |
292.7 |
337.6 |
N |
CA |
CB |
C |
121.3 |
123.5 |
N |
CA |
CB |
HA |
240.8 |
241.8 |
CB |
CA |
C |
OXT |
257.0 |
268.6 |
C |
CA |
CB |
HA |
119.5 |
118.3 |
CG |
CB |
CA |
HB2 |
234.7 |
238.9 |
CG |
CB |
CA |
HB3 |
125.2 |
123.1 |
CA |
CB |
CG |
CD1 |
87.7 |
270.0 |
CA |
CB |
CG |
CD2 |
270.2 |
90.1 |
HB2 |
CB |
CA |
HB3 |
250.5 |
244.2 |
HA |
CA |
N |
H |
299.6 |
23.0 |
HA |
CA |
N |
H2 |
174.3 |
216.4 |
N |
CA |
HA |
C |
240.5 |
241.2 |
N |
CA |
HA |
CB |
120.3 |
121.1 |
HA |
CA |
C |
OXT |
15.5 |
29.6 |
C |
CA |
HA |
CB |
239.8 |
239.9 |
HA |
CA |
CB |
CG |
59.7 |
320.0 |
HA |
CA |
CB |
HB2 |
184.9 |
81.1 |
HA |
CA |
CB |
HB3 |
294.4 |
196.9 |
CG |
CB |
CA |
HA |
59.7 |
320.0 |
CA |
CB |
CG |
HB2 |
125.3 |
122.5 |
CA |
CB |
CG |
HB3 |
234.7 |
236.7 |
HB2 |
CB |
CG |
HB3 |
109.5 |
114.3 |
CD1 |
CG |
CB |
CD2 |
177.5 |
179.9 |
CB |
CG |
CD1 |
CE1 |
182.4 |
180.0 |
CB |
CG |
CD1 |
HD1 |
2.4 |
0.1 |
CB |
CG |
CD2 |
CE2 |
177.4 |
180.0 |
CB |
CG |
CD2 |
HD2 |
357.4 |
359.9 |
HB2 |
CB |
CA |
HA |
184.9 |
81.1 |
CA |
CB |
HB2 |
CG |
233.6 |
236.0 |
CA |
CB |
HB2 |
HB3 |
116.8 |
118.8 |
CG |
CB |
HB2 |
HB3 |
243.2 |
242.8 |
HB2 |
CB |
CG |
CD1 |
322.5 |
147.5 |
HB2 |
CB |
CG |
CD2 |
144.9 |
327.6 |
HB3 |
CB |
CA |
HA |
294.4 |
196.9 |
CA |
CB |
HB3 |
CG |
126.4 |
124.9 |
CA |
CB |
HB3 |
HB2 |
243.2 |
241.0 |
CG |
CB |
HB3 |
HB2 |
116.8 |
116.1 |
HB3 |
CB |
CG |
CD1 |
213.0 |
33.3 |
HB3 |
CB |
CG |
CD2 |
35.4 |
213.3 |
CD1 |
CG |
CB |
HB2 |
322.5 |
147.5 |
CD1 |
CG |
CB |
HB3 |
213.0 |
33.3 |
CB |
CG |
CD1 |
CD2 |
182.4 |
180.1 |
CD1 |
CG |
CD2 |
CE2 |
359.8 |
0.1 |
CD1 |
CG |
CD2 |
HD2 |
179.8 |
180.0 |
CE1 |
CD1 |
CG |
HD1 |
180.0 |
179.9 |
CG |
CD1 |
CE1 |
CZ |
0.2 |
0.1 |
CG |
CD1 |
CE1 |
HE1 |
180.2 |
180.1 |
CD2 |
CG |
CB |
HB2 |
144.9 |
327.6 |
CD2 |
CG |
CB |
HB3 |
35.4 |
213.3 |
CB |
CG |
CD2 |
CD1 |
177.6 |
179.9 |
CD2 |
CG |
CD1 |
CE1 |
0.0 |
359.9 |
CD2 |
CG |
CD1 |
HD1 |
180.0 |
180.0 |
CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
CG |
CD2 |
CE2 |
CZ |
0.1 |
360.0 |
CG |
CD2 |
CE2 |
HE2 |
180.1 |
179.9 |
CE1 |
CD1 |
CG |
CD2 |
0.0 |
359.9 |
CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.1 |
CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
CD1 |
CE1 |
CZ |
CE2 |
359.8 |
359.9 |
CD1 |
CE1 |
CZ |
CN1 |
179.5 |
179.9 |
HD1 |
CD1 |
CG |
CD2 |
180.0 |
180.0 |
CG |
CD1 |
HD1 |
CE1 |
180.0 |
179.9 |
HD1 |
CD1 |
CE1 |
CZ |
180.2 |
180.0 |
HD1 |
CD1 |
CE1 |
HE1 |
0.2 |
0.0 |
CG |
CD2 |
CE2 |
HD2 |
180.0 |
179.9 |
CE1 |
CZ |
CE2 |
CD2 |
0.1 |
0.0 |
CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
CD2 |
CE2 |
CZ |
CN1 |
180.4 |
180.0 |
CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.1 |
HD2 |
CD2 |
CE2 |
CZ |
180.1 |
180.0 |
HD2 |
CD2 |
CE2 |
HE2 |
0.2 |
360.0 |
CZ |
CE1 |
CD1 |
HD1 |
180.2 |
180.0 |
CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
CD2 |
CE2 |
CZ |
CE1 |
0.1 |
0.0 |
CE1 |
CZ |
CE2 |
HE2 |
180.0 |
180.1 |
CE2 |
CZ |
CE1 |
CN1 |
180.3 |
180.0 |
CE1 |
CZ |
CN1 |
ON2 |
199.3 |
270.0 |
CE1 |
CZ |
CN1 |
CT |
24.7 |
89.9 |
HE1 |
CE1 |
CD1 |
HD1 |
0.2 |
0.0 |
CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
HE1 |
CE1 |
CZ |
CE2 |
179.8 |
179.9 |
HE1 |
CE1 |
CZ |
CN1 |
359.5 |
359.9 |
CZ |
CE2 |
CD2 |
HD2 |
180.1 |
180.0 |
CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
CE2 |
CZ |
CE1 |
HE1 |
179.8 |
179.9 |
CE1 |
CZ |
CE2 |
CN1 |
179.7 |
180.0 |
CE2 |
CZ |
CN1 |
ON2 |
18.9 |
90.0 |
CE2 |
CZ |
CN1 |
CT |
204.4 |
269.9 |
HE2 |
CE2 |
CD2 |
HD2 |
0.2 |
360.0 |
CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
HE2 |
CE2 |
CZ |
CN1 |
0.4 |
0.1 |
CN1 |
CZ |
CE1 |
HE1 |
359.5 |
359.9 |
CE1 |
CZ |
CN1 |
CE2 |
180.3 |
180.0 |
CN1 |
CZ |
CE2 |
HE2 |
0.4 |
0.1 |
ON2 |
CN1 |
CZ |
CT |
174.5 |
180.1 |
CZ |
CN1 |
CT |
CI1 |
41.6 |
0.1 |
CZ |
CN1 |
CT |
CI2 |
220.9 |
180.0 |
CZ |
CN1 |
ON2 |
CT |
185.3 |
179.9 |
ON2 |
CN1 |
CT |
CI1 |
226.9 |
180.0 |
ON2 |
CN1 |
CT |
CI2 |
46.2 |
360.0 |
CZ |
CN1 |
CT |
ON2 |
174.6 |
180.1 |
CI1 |
CT |
CN1 |
CI2 |
180.7 |
180.0 |
CN1 |
CT |
CI1 |
CK1 |
179.2 |
180.0 |
CN1 |
CT |
CI1 |
HI1 |
359.3 |
359.9 |
CN1 |
CT |
CI2 |
CK2 |
180.6 |
180.0 |
CN1 |
CT |
CI2 |
HI2 |
0.6 |
0.1 |
CN1 |
CT |
CI1 |
CI2 |
179.3 |
180.0 |
CI1 |
CT |
CI2 |
CK2 |
360.0 |
360.0 |
CI1 |
CT |
CI2 |
HI2 |
179.9 |
180.0 |
CK1 |
CI1 |
CT |
HI1 |
180.0 |
180.1 |
CT |
CI1 |
CK1 |
CL |
0.1 |
359.9 |
CT |
CI1 |
CK1 |
HK1 |
180.1 |
180.0 |
CN1 |
CT |
CI2 |
CI1 |
180.7 |
180.0 |
CI2 |
CT |
CI1 |
CK1 |
359.9 |
0.0 |
CI2 |
CT |
CI1 |
HI1 |
180.0 |
180.0 |
CK2 |
CI2 |
CT |
HI2 |
180.0 |
180.0 |
CT |
CI2 |
CK2 |
CL |
0.1 |
360.0 |
CT |
CI2 |
CK2 |
HK2 |
180.1 |
180.0 |
CK1 |
CI1 |
CT |
CI2 |
359.9 |
0.0 |
CT |
CI1 |
CK1 |
HI1 |
180.0 |
179.9 |
CL |
CK1 |
CI1 |
HK1 |
180.0 |
180.0 |
CI1 |
CK1 |
CL |
CK2 |
360.0 |
0.0 |
CI1 |
CK1 |
CL |
HCL |
180.0 |
180.1 |
HI1 |
CI1 |
CT |
CI2 |
180.0 |
180.0 |
CT |
CI1 |
HI1 |
CK1 |
180.0 |
180.1 |
HI1 |
CI1 |
CK1 |
CL |
180.0 |
180.0 |
HI1 |
CI1 |
CK1 |
HK1 |
0.1 |
0.0 |
CT |
CI2 |
CK2 |
HI2 |
180.0 |
180.0 |
CK1 |
CL |
CK2 |
CI2 |
359.9 |
0.0 |
CL |
CK2 |
CI2 |
HK2 |
180.0 |
180.0 |
CI2 |
CK2 |
CL |
HCL |
179.9 |
180.0 |
CT |
CI2 |
HI2 |
CK2 |
180.0 |
180.0 |
HI2 |
CI2 |
CK2 |
CL |
180.2 |
180.0 |
HI2 |
CI2 |
CK2 |
HK2 |
0.1 |
359.9 |
CL |
CK1 |
CI1 |
HI1 |
180.0 |
180.0 |
CI1 |
CK1 |
CL |
HK1 |
180.0 |
180.0 |
CI2 |
CK2 |
CL |
CK1 |
359.9 |
0.0 |
CK1 |
CL |
CK2 |
HK2 |
179.9 |
180.0 |
CK2 |
CL |
CK1 |
HCL |
180.0 |
180.0 |
HK1 |
CK1 |
CI1 |
HI1 |
0.1 |
0.0 |
CI1 |
CK1 |
HK1 |
CL |
180.0 |
180.0 |
HK1 |
CK1 |
CL |
CK2 |
180.0 |
180.0 |
HK1 |
CK1 |
CL |
HCL |
0.0 |
0.0 |
CL |
CK2 |
CI2 |
HI2 |
180.2 |
180.0 |
CI2 |
CK2 |
CL |
HK2 |
180.0 |
180.0 |
CK2 |
CL |
CK1 |
HK1 |
180.0 |
180.0 |
CK1 |
CL |
CK2 |
HCL |
180.0 |
180.0 |
HK2 |
CK2 |
CI2 |
HI2 |
0.1 |
359.9 |
CI2 |
CK2 |
HK2 |
CL |
180.0 |
180.0 |
HK2 |
CK2 |
CL |
HCL |
359.9 |
360.0 |
HCL |
CL |
CK1 |
HK1 |
0.0 |
0.0 |
CK1 |
CL |
HCL |
CK2 |
180.0 |
180.0 |
HCL |
CL |
CK2 |
HK2 |
359.9 |
360.0 |