PDB Chemical Component PBF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PBF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.450 1.441
N H 1.020 1.005
N H2 1.019 1.007
C O   1.227
C CA 1.505 1.521
C OXT 1.326 1.354
CA CB 1.520 1.535
CA HA 1.116 1.096
CB CG 1.496 1.510
CB HB2 1.114 1.097
CB HB3 1.115 1.099
CG CD1 1.389 1.386
CG CD2 1.388 1.386
CD1 CE1 1.402 1.395
CD1 HD1 1.103 1.086
CD2 CE2 1.397 1.395
CD2 HD2 1.103 1.086
CE1 CZ 1.390 1.395
CE1 HE1 1.102 1.086
CE2 CZ 1.394 1.394
CE2 HE2 1.103 1.087
CZ CN1 1.524 1.455
CN1 ON2 1.226 1.240
CN1 CT 1.510 1.494
CT CI1 1.398 1.375
CT CI2 1.389 1.375
CI1 CK1 1.395 1.395
CI1 HI1 1.103 1.088
CI2 CK2 1.385 1.395
CI2 HI2 1.104 1.087
CK1 CL 1.395 1.395
CK1 HK1 1.102 1.086
CK2 CL 1.398 1.395
CK2 HK2 1.104 1.086
CL HCL 1.103 1.086
OXT HXT 0.949 0.980

Bond Angles for PBF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.2 119.0
CA N H2 112.3 119.0
N CA C 109.3 111.2
N CA CB 110.8 111.1
N CA HA 109.1 106.2
H N H2 112.3 120.6
O C CA   123.0
O C OXT   122.2
CA C OXT 115.1 114.8
C CA CB 110.5 110.0
C CA HA 109.4 106.9
C OXT HXT 65.2 114.9
CB CA HA 107.8 111.3
CA CB CG 113.0 113.0
CA CB HB2 110.9 110.4
CA CB HB3 110.9 110.1
CG CB HB2 110.9 108.1
CG CB HB3 110.9 109.7
CB CG CD1 120.5 119.3
CB CG CD2 120.4 119.3
HB2 CB HB3 99.4 105.2
CD1 CG CD2 119.0 121.3
CG CD1 CE1 120.6 119.3
CG CD1 HD1 119.3 121.1
CG CD2 CE2 120.5 119.3
CG CD2 HD2 119.5 121.2
CE1 CD1 HD1 120.1 119.5
CD1 CE1 CZ 120.4 120.0
CD1 CE1 HE1 120.3 119.3
CE2 CD2 HD2 120.0 119.5
CD2 CE2 CZ 120.7 120.0
CD2 CE2 HE2 119.8 119.3
CZ CE1 HE1 119.3 120.7
CE1 CZ CE2 118.8 120.0
CE1 CZ CN1 121.1 120.0
CZ CE2 HE2 119.6 120.7
CE2 CZ CN1 120.1 120.0
CZ CN1 ON2 120.4 120.3
CZ CN1 CT 121.2 122.4
ON2 CN1 CT 118.2 117.3
CN1 CT CI1 122.0 118.5
CN1 CT CI2 118.7 118.6
CI1 CT CI2 119.3 122.9
CT CI1 CK1 120.8 118.6
CT CI1 HI1 119.7 122.0
CT CI2 CK2 120.5 118.6
CT CI2 HI2 119.9 122.1
CK1 CI1 HI1 119.5 119.4
CI1 CK1 CL 119.3 119.9
CI1 CK1 HK1 120.3 120.0
CK2 CI2 HI2 119.6 119.3
CI2 CK2 CL 120.2 120.0
CI2 CK2 HK2 119.4 120.0
CL CK1 HK1 120.4 120.1
CK1 CL CK2 119.9 120.0
CK1 CL HCL 120.0 120.0
CL CK2 HK2 120.4 120.0
CK2 CL HCL 120.1 120.0

Torsion Angles for PBF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.3 166.6
O C CA N   325.5
N CA C OXT 134.9 145.1
C CA N CB 122.0 122.8
C CA N HA 240.5 244.0
CB CA N HA 118.5 121.2
N CA CB CG 300.4 201.8
N CA CB HB2 65.7 323.0
N CA CB HB3 175.2 78.8
CA N H H2 234.7 193.6
H N CA C 180.0 267.1
H N CA CB 58.0 144.3
H N CA HA 299.6 23.0
CA N H2 H 123.6 166.4
H2 N CA C 54.7 100.5
H2 N CA CB 292.7 337.6
H2 N CA HA 174.3 216.4
N CA C O   325.5
CA C O OXT   179.6
O C CA CB   89.0
O C CA HA   210.0
O C OXT HXT   0.1
C CA N H 180.0 267.1
C CA N H2 54.7 100.5
N CA C CB 237.8 236.5
N CA C HA 119.3 115.5
O C CA OXT   180.4
CA C OXT HXT 150.8 180.4
CB CA C HA 241.5 239.0
C CA CB CG 179.2 78.3
C CA CB HB2 304.4 199.4
C CA CB HB3 53.9 315.2
O C OXT CA   179.6
OXT C CA CB 257.0 268.6
OXT C CA HA 15.5 29.6
CB CA N H 58.0 144.3
CB CA N H2 292.7 337.6
N CA CB C 121.3 123.5
N CA CB HA 240.8 241.8
CB CA C OXT 257.0 268.6
C CA CB HA 119.5 118.3
CG CB CA HB2 234.7 238.9
CG CB CA HB3 125.2 123.1
CA CB CG CD1 87.7 270.0
CA CB CG CD2 270.2 90.1
HB2 CB CA HB3 250.5 244.2
HA CA N H 299.6 23.0
HA CA N H2 174.3 216.4
N CA HA C 240.5 241.2
N CA HA CB 120.3 121.1
HA CA C OXT 15.5 29.6
C CA HA CB 239.8 239.9
HA CA CB CG 59.7 320.0
HA CA CB HB2 184.9 81.1
HA CA CB HB3 294.4 196.9
CG CB CA HA 59.7 320.0
CA CB CG HB2 125.3 122.5
CA CB CG HB3 234.7 236.7
HB2 CB CG HB3 109.5 114.3
CD1 CG CB CD2 177.5 179.9
CB CG CD1 CE1 182.4 180.0
CB CG CD1 HD1 2.4 0.1
CB CG CD2 CE2 177.4 180.0
CB CG CD2 HD2 357.4 359.9
HB2 CB CA HA 184.9 81.1
CA CB HB2 CG 233.6 236.0
CA CB HB2 HB3 116.8 118.8
CG CB HB2 HB3 243.2 242.8
HB2 CB CG CD1 322.5 147.5
HB2 CB CG CD2 144.9 327.6
HB3 CB CA HA 294.4 196.9
CA CB HB3 CG 126.4 124.9
CA CB HB3 HB2 243.2 241.0
CG CB HB3 HB2 116.8 116.1
HB3 CB CG CD1 213.0 33.3
HB3 CB CG CD2 35.4 213.3
CD1 CG CB HB2 322.5 147.5
CD1 CG CB HB3 213.0 33.3
CB CG CD1 CD2 182.4 180.1
CD1 CG CD2 CE2 359.8 0.1
CD1 CG CD2 HD2 179.8 180.0
CE1 CD1 CG HD1 180.0 179.9
CG CD1 CE1 CZ 0.2 0.1
CG CD1 CE1 HE1 180.2 180.1
CD2 CG CB HB2 144.9 327.6
CD2 CG CB HB3 35.4 213.3
CB CG CD2 CD1 177.6 179.9
CD2 CG CD1 CE1 0.0 359.9
CD2 CG CD1 HD1 180.0 180.0
CE2 CD2 CG HD2 180.0 180.1
CG CD2 CE2 CZ 0.1 360.0
CG CD2 CE2 HE2 180.1 179.9
CE1 CD1 CG CD2 0.0 359.9
CG CD1 CE1 HD1 180.0 180.1
CZ CE1 CD1 HE1 180.0 180.0
CD1 CE1 CZ CE2 359.8 359.9
CD1 CE1 CZ CN1 179.5 179.9
HD1 CD1 CG CD2 180.0 180.0
CG CD1 HD1 CE1 180.0 179.9
HD1 CD1 CE1 CZ 180.2 180.0
HD1 CD1 CE1 HE1 0.2 0.0
CG CD2 CE2 HD2 180.0 179.9
CE1 CZ CE2 CD2 0.1 0.0
CZ CE2 CD2 HE2 180.0 180.0
CD2 CE2 CZ CN1 180.4 180.0
CG CD2 HD2 CE2 180.0 180.1
HD2 CD2 CE2 CZ 180.1 180.0
HD2 CD2 CE2 HE2 0.2 360.0
CZ CE1 CD1 HD1 180.2 180.0
CD1 CE1 CZ HE1 180.0 180.0
CD2 CE2 CZ CE1 0.1 0.0
CE1 CZ CE2 HE2 180.0 180.1
CE2 CZ CE1 CN1 180.3 180.0
CE1 CZ CN1 ON2 199.3 270.0
CE1 CZ CN1 CT 24.7 89.9
HE1 CE1 CD1 HD1 0.2 0.0
CD1 CE1 HE1 CZ 180.0 180.0
HE1 CE1 CZ CE2 179.8 179.9
HE1 CE1 CZ CN1 359.5 359.9
CZ CE2 CD2 HD2 180.1 180.0
CD2 CE2 CZ HE2 180.0 180.0
CE2 CZ CE1 HE1 179.8 179.9
CE1 CZ CE2 CN1 179.7 180.0
CE2 CZ CN1 ON2 18.9 90.0
CE2 CZ CN1 CT 204.4 269.9
HE2 CE2 CD2 HD2 0.2 360.0
CD2 CE2 HE2 CZ 180.0 180.0
HE2 CE2 CZ CN1 0.4 0.1
CN1 CZ CE1 HE1 359.5 359.9
CE1 CZ CN1 CE2 180.3 180.0
CN1 CZ CE2 HE2 0.4 0.1
ON2 CN1 CZ CT 174.5 180.1
CZ CN1 CT CI1 41.6 0.1
CZ CN1 CT CI2 220.9 180.0
CZ CN1 ON2 CT 185.3 179.9
ON2 CN1 CT CI1 226.9 180.0
ON2 CN1 CT CI2 46.2 360.0
CZ CN1 CT ON2 174.6 180.1
CI1 CT CN1 CI2 180.7 180.0
CN1 CT CI1 CK1 179.2 180.0
CN1 CT CI1 HI1 359.3 359.9
CN1 CT CI2 CK2 180.6 180.0
CN1 CT CI2 HI2 0.6 0.1
CN1 CT CI1 CI2 179.3 180.0
CI1 CT CI2 CK2 360.0 360.0
CI1 CT CI2 HI2 179.9 180.0
CK1 CI1 CT HI1 180.0 180.1
CT CI1 CK1 CL 0.1 359.9
CT CI1 CK1 HK1 180.1 180.0
CN1 CT CI2 CI1 180.7 180.0
CI2 CT CI1 CK1 359.9 0.0
CI2 CT CI1 HI1 180.0 180.0
CK2 CI2 CT HI2 180.0 180.0
CT CI2 CK2 CL 0.1 360.0
CT CI2 CK2 HK2 180.1 180.0
CK1 CI1 CT CI2 359.9 0.0
CT CI1 CK1 HI1 180.0 179.9
CL CK1 CI1 HK1 180.0 180.0
CI1 CK1 CL CK2 360.0 0.0
CI1 CK1 CL HCL 180.0 180.1
HI1 CI1 CT CI2 180.0 180.0
CT CI1 HI1 CK1 180.0 180.1
HI1 CI1 CK1 CL 180.0 180.0
HI1 CI1 CK1 HK1 0.1 0.0
CT CI2 CK2 HI2 180.0 180.0
CK1 CL CK2 CI2 359.9 0.0
CL CK2 CI2 HK2 180.0 180.0
CI2 CK2 CL HCL 179.9 180.0
CT CI2 HI2 CK2 180.0 180.0
HI2 CI2 CK2 CL 180.2 180.0
HI2 CI2 CK2 HK2 0.1 359.9
CL CK1 CI1 HI1 180.0 180.0
CI1 CK1 CL HK1 180.0 180.0
CI2 CK2 CL CK1 359.9 0.0
CK1 CL CK2 HK2 179.9 180.0
CK2 CL CK1 HCL 180.0 180.0
HK1 CK1 CI1 HI1 0.1 0.0
CI1 CK1 HK1 CL 180.0 180.0
HK1 CK1 CL CK2 180.0 180.0
HK1 CK1 CL HCL 0.0 0.0
CL CK2 CI2 HI2 180.2 180.0
CI2 CK2 CL HK2 180.0 180.0
CK2 CL CK1 HK1 180.0 180.0
CK1 CL CK2 HCL 180.0 180.0
HK2 CK2 CI2 HI2 0.1 359.9
CI2 CK2 HK2 CL 180.0 180.0
HK2 CK2 CL HCL 359.9 360.0
HCL CL CK1 HK1 0.0 0.0
CK1 CL HCL CK2 180.0 180.0
HCL CL CK2 HK2 359.9 360.0