PDB Chemical Component PBE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PBE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CD	1.467	1.479
N	CA	1.427	1.474
N	CE	1.474	1.469
N	CF	1.472	1.469
CD	CG	1.516	1.550
CD	HD1	1.100	1.089
CD	HD2	1.100	1.090
CA	CB	1.479	1.542
CA	C	1.340	1.507
CA	HA	1.100	1.090
CB	CG	1.534	1.551
CB	HB1	1.100	1.091
CB	HB2	1.100	1.090
CG	HG1	1.100	1.090
CG	HG2	1.100	1.090
CE	HE1	1.100	1.090
CE	HE2	1.100	1.090
CE	HE3	1.100	1.090
CF	HF1	1.100	1.090
CF	HF2	1.100	1.089
CF	HF3	1.100	1.090
C	O	1.220	1.208
C	OXT	1.220	1.342
OXT	HXT	0.950	0.968

Bond Angles for PBE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CD	N	CA	99.8	108.5
CD	N	CE	110.2	109.6
CD	N	CF	108.2	109.6
N	CD	CG	106.3	104.8
N	CD	HD1	111.2	110.4
N	CD	HD2	110.5	110.4
CA	N	CE	115.3	109.7
CA	N	CF	115.0	109.7
N	CA	CB	108.4	107.3
N	CA	C	126.5	110.0
N	CA	HA	98.3	109.8
CE	N	CF	107.8	109.7
N	CE	HE1	109.5	109.5
N	CE	HE2	109.5	109.5
N	CE	HE3	109.5	109.5
N	CF	HF1	109.5	109.5
N	CF	HF2	109.5	109.5
N	CF	HF3	109.5	109.4
CG	CD	HD1	111.2	110.3
CG	CD	HD2	110.5	110.4
CD	CG	CB	104.9	101.6
CD	CG	HG1	112.0	111.0
CD	CG	HG2	111.0	111.0
HD1	CD	HD2	107.1	110.5
CB	CA	C	113.2	109.9
CB	CA	HA	117.7	109.9
CA	CB	CG	100.6	103.0
CA	CB	HB1	114.4	110.7
CA	CB	HB2	112.6	110.7
C	CA	HA	91.0	109.9
CA	C	O	117.9	120.0
CA	C	OXT	124.1	120.0
CG	CB	HB1	114.4	110.7
CG	CB	HB2	112.5	110.7
CB	CG	HG1	112.0	111.0
CB	CG	HG2	111.0	111.0
HB1	CB	HB2	102.9	110.7
HG1	CG	HG2	106.0	110.9
HE1	CE	HE2	109.5	109.5
HE1	CE	HE3	109.4	109.4
HE2	CE	HE3	109.5	109.4
HF1	CF	HF2	109.5	109.5
HF1	CF	HF3	109.4	109.5
HF2	CF	HF3	109.5	109.4
O	C	OXT	117.8	120.0
C	OXT	HXT	109.5	119.9

Torsion Angles for PBE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CA	N	CD	CE	238.3	240.2
CA	N	CD	CF	120.6	119.8
CD	N	CA	CB	313.7	358.9
CD	N	CA	C	93.4	118.5
CD	N	CA	HA	190.8	239.5
CE	N	CD	CF	242.3	239.5
CD	N	CE	HE1	207.2	190.3
CD	N	CE	HE2	87.2	310.4
CD	N	CE	HE3	327.1	70.4
CD	N	CF	HF1	7.5	298.8
CD	N	CF	HF2	247.5	58.9
CD	N	CF	HF3	127.5	178.9
CG	CD	N	HD1	121.2	241.2
CG	CD	N	HD2	240.0	118.8
N	CD	CG	CB	344.2	322.9
N	CD	CG	HG1	222.5	81.0
N	CD	CG	HG2	104.2	204.9
HD1	CD	N	HD2	118.8	237.6
CD	N	CA	CE	118.0	119.7
CD	N	CA	CF	244.5	240.3
CA	N	CD	CG	36.8	24.1
CA	N	CD	HD1	275.6	142.9
CA	N	CD	HD2	156.8	265.3
CE	N	CA	CF	126.5	120.5
CA	N	CE	HE1	319.2	309.4
CA	N	CE	HE2	199.2	69.4
CA	N	CE	HE3	79.1	189.4
CA	N	CF	HF1	257.0	179.8
CA	N	CF	HF2	137.0	299.9
CA	N	CF	HF3	16.9	59.8
CB	CA	N	C	220.3	240.5
CB	CA	N	HA	122.9	119.4
N	CA	CB	CG	36.2	337.8
N	CA	CB	HB1	273.1	219.4
N	CA	CB	HB2	156.1	96.2
C	CA	N	HA	262.6	238.9
N	CA	C	O	304.5	305.8
N	CA	C	OXT	129.4	125.9
CD	N	CE	CA	248.0	240.9
CD	N	CE	CF	117.9	120.4
CE	N	CD	CG	158.5	143.9
CE	N	CD	HD1	37.3	262.7
CE	N	CD	HD2	278.5	25.1
CA	N	CE	CF	230.0	239.5
CE	N	CA	CB	195.6	239.2
CE	N	CA	C	335.4	358.7
CE	N	CA	HA	72.7	119.8
CE	N	CF	HF1	126.8	59.3
CE	N	CF	HF2	6.7	179.4
CE	N	CF	HF3	246.7	299.3
HE1	CE	N	HE2	120.0	239.9
HE1	CE	N	HE3	240.0	120.0
HE2	CE	N	HE3	120.0	240.0
CD	N	CF	CA	110.5	119.1
CD	N	CF	CE	240.8	239.6
CF	N	CD	CG	276.2	264.4
CF	N	CD	HD1	155.0	23.2
CF	N	CD	HD2	36.2	145.6
CA	N	CF	CE	130.2	120.5
CF	N	CA	CB	69.2	118.7
CF	N	CA	C	208.9	238.2
CF	N	CA	HA	306.3	359.3
CF	N	CE	HE1	89.2	69.9
CF	N	CE	HE2	329.2	189.9
CF	N	CE	HE3	209.2	309.9
HF1	CF	N	HF2	120.0	239.9
HF1	CF	N	HF3	240.0	120.0
HF2	CF	N	HF3	120.0	240.1
CG	CD	N	CA	36.8	24.1
CG	CD	N	CE	158.5	143.9
CG	CD	N	CF	276.2	264.4
N	CD	CG	HD1	238.8	118.8
N	CD	CG	HD2	120.0	241.2
HD1	CD	CG	HD2	241.2	122.4
CA	CB	CG	CD	348.9	35.6
CD	CG	CB	HB1	112.0	154.0
CD	CG	CB	HB2	228.9	277.3
CB	CG	CD	HG1	121.7	241.9
CB	CG	CD	HG2	240.0	118.1
HG1	CG	CD	HG2	118.3	236.2
HD1	CD	N	CA	275.6	142.9
HD1	CD	N	CE	37.3	262.7
HD1	CD	N	CF	155.0	23.2
N	CD	HD1	CG	118.3	244.7
N	CD	HD1	HD2	239.2	122.4
CG	CD	HD1	HD2	120.8	237.7
HD1	CD	CG	CB	105.5	204.1
HD1	CD	CG	HG1	343.8	322.2
HD1	CD	CG	HG2	225.5	86.0
HD2	CD	N	CA	156.8	265.3
HD2	CD	N	CE	278.5	25.1
HD2	CD	N	CF	36.2	145.6
N	CD	HD2	CG	242.6	115.3
N	CD	HD2	HD1	121.3	237.6
CG	CD	HD2	HD1	238.7	122.3
HD2	CD	CG	CB	224.3	81.7
HD2	CD	CG	HG1	102.6	199.9
HD2	CD	CG	HG2	344.3	323.7
CB	CA	N	CE	195.6	239.2
CB	CA	N	CF	69.2	118.7
N	CA	CB	C	145.6	119.6
N	CA	CB	HA	249.8	240.7
CD	CG	CB	CA	348.9	35.6
C	CA	CB	HA	104.2	121.0
CB	CA	C	O	82.6	63.8
CB	CA	C	OXT	267.5	243.8
CG	CB	CA	HB1	123.1	118.4
CG	CB	CA	HB2	240.0	241.6
CA	CB	CG	HG1	110.7	277.5
CA	CB	CG	HG2	229.0	153.7
HB1	CB	CA	HB2	117.0	123.2
C	CA	N	CE	335.4	358.7
C	CA	N	CF	208.9	238.2
N	CA	C	CB	221.9	242.1
N	CA	C	HA	101.0	121.0
CB	CA	C	HA	239.1	239.0
C	CA	CB	CG	250.6	218.1
C	CA	CB	HB1	127.6	99.8
C	CA	CB	HB2	10.6	336.6
O	C	CA	OXT	175.0	179.9
CA	C	OXT	HXT	175.1	180.0
HA	CA	N	CE	72.7	119.8
HA	CA	N	CF	306.3	359.3
N	CA	HA	CB	115.8	117.8
N	CA	HA	C	232.9	238.8
CB	CA	HA	C	117.0	121.0
HA	CA	CB	CG	146.4	97.1
HA	CA	CB	HB1	23.3	338.7
HA	CA	CB	HB2	266.3	215.5
HA	CA	C	O	203.4	184.8
HA	CA	C	OXT	28.4	4.9
CB	CG	CD	HD1	105.5	204.1
CB	CG	CD	HD2	224.3	81.7
CD	CG	CB	HG1	238.3	118.1
CD	CG	CB	HG2	120.0	241.9
CG	CB	CA	C	250.6	218.1
CG	CB	CA	HA	146.4	97.1
CA	CB	CG	HB1	236.9	241.6
CA	CB	CG	HB2	120.0	118.4
HB1	CB	CG	HB2	243.0	236.8
HG1	CG	CB	HG2	241.7	123.8
HB1	CB	CA	C	127.6	99.8
HB1	CB	CA	HA	23.3	338.7
CA	CB	HB1	CG	115.3	113.6
CA	CB	HB1	HB2	237.6	236.8
CG	CB	HB1	HB2	122.3	123.2
HB1	CB	CG	HG1	233.7	35.9
HB1	CB	CG	HG2	352.0	272.1
HB2	CB	CA	C	10.6	336.6
HB2	CB	CA	HA	266.3	215.5
CA	CB	HB2	CG	247.2	246.4
CA	CB	HB2	HB1	123.6	123.2
CG	CB	HB2	HB1	236.4	236.8
HB2	CB	CG	HG1	350.7	159.1
HB2	CB	CG	HG2	109.0	35.3
HG1	CG	CD	HD1	343.8	322.2
HG1	CG	CD	HD2	102.6	199.9
CD	CG	HG1	CB	117.5	247.7
CD	CG	HG1	HG2	238.8	123.9
HG1	CG	CB	HB1	233.7	35.9
HG1	CG	CB	HB2	350.7	159.1
CB	CG	HG1	HG2	121.3	236.1
HG2	CG	CD	HD1	225.5	86.0
HG2	CG	CD	HD2	344.3	323.7
CD	CG	HG2	CB	243.8	112.2
CD	CG	HG2	HG1	121.9	236.1
HG2	CG	CB	HB1	352.0	272.1
HG2	CG	CB	HB2	109.0	35.3
CB	CG	HG2	HG1	238.1	123.9
HE1	CE	N	CF	89.2	69.9
N	CE	HE1	HE2	240.0	120.0
N	CE	HE1	HE3	120.0	240.0
HE2	CE	HE1	HE3	240.0	120.0
HE2	CE	N	CF	329.2	189.9
N	CE	HE2	HE1	120.0	240.0
N	CE	HE2	HE3	240.0	120.0
HE1	CE	HE2	HE3	120.0	240.0
HE3	CE	N	CF	209.2	309.9
N	CE	HE3	HE1	240.0	120.0
N	CE	HE3	HE2	120.0	240.0
HE1	CE	HE3	HE2	240.0	120.0
N	CF	HF1	HF2	240.0	120.1
N	CF	HF1	HF3	120.0	240.0
HF2	CF	HF1	HF3	240.0	120.0
N	CF	HF2	HF1	120.0	239.9
N	CF	HF2	HF3	240.0	119.9
HF1	CF	HF2	HF3	119.9	240.0
N	CF	HF3	HF1	240.0	120.0
N	CF	HF3	HF2	120.0	240.0
HF1	CF	HF3	HF2	240.0	120.0
O	C	CA	HA	203.4	184.8
CA	C	O	OXT	184.6	180.1
O	C	OXT	HXT	0.0	0.1
OXT	C	CA	HA	28.4	4.9
CA	C	OXT	O	175.1	179.9