PDB Chemical Component PBC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PBC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| B |
O1 |
1.434 |
1.419 |
| B |
O2 |
1.404 |
1.419 |
| B |
CA |
1.551 |
1.570 |
| O1 |
HO1 |
0.951 |
0.967 |
| O2 |
HO2 |
0.950 |
0.967 |
| CG1 |
CD1 |
1.418 |
1.383 |
| CG1 |
CB1 |
1.413 |
1.380 |
| CG1 |
HG1 |
1.103 |
1.080 |
| CD1 |
CG2 |
1.413 |
1.383 |
| CD1 |
HD1 |
1.102 |
1.080 |
| CG2 |
CB2 |
1.412 |
1.380 |
| CG2 |
HG2 |
1.102 |
1.080 |
| CB2 |
CA |
1.428 |
1.393 |
| CB2 |
HB2 |
1.103 |
1.080 |
| CA |
CB1 |
1.437 |
1.393 |
| CB1 |
HB1 |
1.104 |
1.080 |
Bond Angles for PBC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
B |
O2 |
104.3 |
120.0 |
| O1 |
B |
CA |
110.8 |
120.0 |
| B |
O1 |
HO1 |
104.3 |
106.8 |
| O2 |
B |
CA |
115.4 |
120.0 |
| B |
O2 |
HO2 |
104.3 |
106.8 |
| B |
CA |
CB2 |
120.4 |
120.1 |
| B |
CA |
CB1 |
120.8 |
120.1 |
| CD1 |
CG1 |
CB1 |
119.7 |
120.1 |
| CD1 |
CG1 |
HG1 |
120.4 |
119.9 |
| CG1 |
CD1 |
CG2 |
120.7 |
120.2 |
| CG1 |
CD1 |
HD1 |
119.8 |
119.9 |
| CB1 |
CG1 |
HG1 |
119.9 |
119.9 |
| CG1 |
CB1 |
CA |
120.4 |
119.9 |
| CG1 |
CB1 |
HB1 |
119.0 |
120.1 |
| CG2 |
CD1 |
HD1 |
119.5 |
119.9 |
| CD1 |
CG2 |
CB2 |
119.8 |
120.1 |
| CD1 |
CG2 |
HG2 |
120.1 |
119.9 |
| CB2 |
CG2 |
HG2 |
120.1 |
119.9 |
| CG2 |
CB2 |
CA |
120.7 |
119.9 |
| CG2 |
CB2 |
HB2 |
119.1 |
120.1 |
| CA |
CB2 |
HB2 |
120.2 |
120.1 |
| CB2 |
CA |
CB1 |
118.8 |
119.8 |
| CA |
CB1 |
HB1 |
120.6 |
120.1 |
Torsion Angles for PBC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
B |
O1 |
CA |
235.3 |
180.0 |
| O1 |
B |
O2 |
HO2 |
180.0 |
0.0 |
| O1 |
B |
CA |
CB2 |
215.2 |
180.0 |
| O1 |
B |
CA |
CB1 |
36.7 |
359.8 |
| O1 |
B |
O2 |
CA |
121.8 |
180.0 |
| O2 |
B |
O1 |
HO1 |
180.0 |
359.9 |
| O2 |
B |
CA |
CB2 |
333.4 |
-0.0 |
| O2 |
B |
CA |
CB1 |
154.9 |
179.8 |
| O1 |
B |
CA |
O2 |
241.8 |
180.0 |
| CA |
B |
O1 |
HO1 |
304.7 |
179.9 |
| CA |
B |
O2 |
HO2 |
58.2 |
180.0 |
| CG1 |
CB1 |
CA |
B |
178.9 |
179.8 |
| CG2 |
CB2 |
CA |
B |
181.1 |
180.0 |
| B |
CA |
CB2 |
HB2 |
1.1 |
-0.0 |
| CB2 |
CA |
B |
CB1 |
178.5 |
180.2 |
| B |
CA |
CB1 |
HB1 |
358.9 |
0.3 |
| HO1 |
O1 |
B |
O2 |
180.0 |
359.9 |
| HO1 |
O1 |
B |
CA |
304.7 |
179.9 |
| HO2 |
O2 |
B |
CA |
58.2 |
180.0 |
| CB1 |
CG1 |
CD1 |
HG1 |
180.0 |
179.8 |
| CD1 |
CG1 |
CB1 |
CA |
359.7 |
0.5 |
| CD1 |
CG1 |
CB1 |
HB1 |
179.7 |
180.0 |
| CG2 |
CD1 |
CG1 |
HD1 |
180.0 |
179.9 |
| CG1 |
CD1 |
CG2 |
CB2 |
359.9 |
0.0 |
| CG1 |
CD1 |
CG2 |
HG2 |
179.9 |
180.0 |
| B |
CA |
CB1 |
CG1 |
178.9 |
179.8 |
| CD1 |
CG1 |
CB1 |
HG1 |
180.0 |
180.2 |
| CB1 |
CG1 |
CD1 |
CG2 |
0.1 |
359.7 |
| CB1 |
CG1 |
CD1 |
HD1 |
180.1 |
179.8 |
| CB2 |
CA |
CB1 |
CG1 |
0.4 |
359.6 |
| CA |
CB1 |
CG1 |
HB1 |
180.0 |
180.5 |
| CD1 |
CG1 |
HG1 |
CB1 |
180.0 |
179.8 |
| HG1 |
CG1 |
CD1 |
CG2 |
180.1 |
179.9 |
| HG1 |
CG1 |
CD1 |
HD1 |
0.1 |
0.0 |
| HG1 |
CG1 |
CB1 |
CA |
179.7 |
180.3 |
| HG1 |
CG1 |
CB1 |
HB1 |
359.7 |
359.8 |
| CG2 |
CD1 |
CG1 |
CB1 |
0.1 |
359.7 |
| CG2 |
CD1 |
CG1 |
HG1 |
180.1 |
179.9 |
| CG1 |
CD1 |
CG2 |
HD1 |
180.0 |
180.1 |
| CB2 |
CG2 |
CD1 |
HG2 |
180.0 |
180.0 |
| CD1 |
CG2 |
CB2 |
CA |
0.2 |
-0.0 |
| CD1 |
CG2 |
CB2 |
HB2 |
180.2 |
180.0 |
| HD1 |
CD1 |
CG1 |
CB1 |
180.1 |
179.8 |
| HD1 |
CD1 |
CG1 |
HG1 |
0.1 |
0.0 |
| CG1 |
CD1 |
HD1 |
CG2 |
180.0 |
179.9 |
| HD1 |
CD1 |
CG2 |
CB2 |
179.9 |
179.9 |
| HD1 |
CD1 |
CG2 |
HG2 |
360.0 |
359.9 |
| B |
CA |
CB2 |
CG2 |
181.1 |
180.0 |
| CB2 |
CG2 |
CD1 |
HD1 |
179.9 |
179.9 |
| CD1 |
CG2 |
CB2 |
HG2 |
180.0 |
180.0 |
| CA |
CB2 |
CG2 |
HB2 |
180.0 |
180.0 |
| CG2 |
CB2 |
CA |
CB1 |
359.6 |
0.2 |
| HG2 |
CG2 |
CD1 |
HD1 |
360.0 |
359.9 |
| CD1 |
CG2 |
HG2 |
CB2 |
180.0 |
180.0 |
| HG2 |
CG2 |
CB2 |
CA |
180.2 |
180.0 |
| HG2 |
CG2 |
CB2 |
HB2 |
0.2 |
360.0 |
| B |
CA |
CB2 |
CB1 |
181.5 |
179.8 |
| CG1 |
CB1 |
CA |
CB2 |
0.4 |
359.6 |
| CA |
CB2 |
CG2 |
HG2 |
180.2 |
180.0 |
| CG2 |
CB2 |
CA |
HB2 |
180.0 |
180.0 |
| CB2 |
CA |
CB1 |
HB1 |
180.4 |
180.1 |
| HB2 |
CB2 |
CG2 |
HG2 |
0.2 |
360.0 |
| CG2 |
CB2 |
HB2 |
CA |
180.0 |
180.0 |
| HB2 |
CB2 |
CA |
CB1 |
179.6 |
180.2 |
| B |
CA |
CB1 |
CB2 |
178.5 |
180.2 |
| CA |
CB1 |
CG1 |
HG1 |
179.7 |
180.3 |
| CG1 |
CB1 |
CA |
HB1 |
180.0 |
179.5 |
| CB1 |
CA |
CB2 |
HB2 |
179.6 |
180.2 |
| HB1 |
CB1 |
CG1 |
HG1 |
359.7 |
359.8 |
| CG1 |
CB1 |
HB1 |
CA |
180.0 |
180.5 |