PDB Chemical Component PAV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PAV

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.426	1.429
O2	HO2	0.951	0.967
C2	C1	1.531	1.529
C2	O5	1.414	1.437
C2	C3	1.506	1.539
C1	H11	1.115	1.089
C1	H12	1.115	1.090
C1	H113	1.116	1.091
O5	C5	1.442	1.443
C5	C4	1.528	1.550
C5	H51	1.115	1.089
C5	H52	1.115	1.090
C4	O4	1.416	1.430
C4	C3	1.513	1.551
C4	H4	1.114	1.089
O4	HO4	0.950	0.966
C3	O3	1.431	1.429
C3	O13	1.418	1.428
O3	HO3	0.950	0.968
O13	H13	0.950	0.967

Bond Angles for PAV

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	O2	HO2	104.7	106.8
O2	C2	C1	104.6	109.8
O2	C2	O5	115.2	109.9
O2	C2	C3	116.8	109.8
C1	C2	O5	104.0	109.9
C1	C2	C3	108.3	110.0
C2	C1	H11	104.6	109.5
C2	C1	H12	114.0	109.4
C2	C1	H113	114.0	109.4
O5	C2	C3	107.0	107.4
C2	O5	C5	111.8	107.0
C2	C3	C4	106.8	104.0
C2	C3	O3	103.0	110.4
C2	C3	O13	116.9	110.7
H11	C1	H12	114.1	109.5
H11	C1	H113	114.1	109.5
H12	C1	H113	96.5	109.5
O5	C5	C4	107.2	103.4
O5	C5	H51	113.0	110.6
O5	C5	H52	113.1	110.6
C4	C5	H51	113.0	110.6
C4	C5	H52	113.1	110.6
C5	C4	O4	115.2	110.9
C5	C4	C3	104.8	102.1
C5	C4	H4	111.3	110.9
H51	C5	H52	97.4	110.7
O4	C4	C3	115.7	110.9
O4	C4	H4	99.2	110.7
C4	O4	HO4	115.3	106.8
C3	C4	H4	110.8	111.1
C4	C3	O3	103.1	110.5
C4	C3	O13	116.7	110.5
O3	C3	O13	108.7	110.5
C3	O3	HO3	103.0	106.8
C3	O13	H13	116.8	106.8

Torsion Angles for PAV

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	O2	O5	113.5	121.0
C1	C2	O2	C3	240.3	238.9
O2	C2	C1	H11	180.0	300.7
O2	C2	C1	H12	305.3	60.8
O2	C2	C1	H113	54.7	180.7
O5	C2	O2	C3	126.8	118.0
O2	C2	O5	C5	216.2	267.0
O2	C2	C3	C4	146.9	117.6
O2	C2	C3	O3	38.8	236.1
O2	C2	C3	O13	279.7	358.9
HO2	O2	C2	C1	180.0	59.2
HO2	O2	C2	O5	66.5	298.3
HO2	O2	C2	C3	299.7	180.3
C1	C2	O2	HO2	180.0	59.2
O2	C2	C1	O5	238.8	239.0
O2	C2	C1	C3	125.2	121.0
O5	C2	C1	C3	246.5	242.0
C1	C2	O5	C5	102.3	146.0
C1	C2	C3	C4	264.6	238.6
C1	C2	C3	O3	156.5	357.1
C1	C2	C3	O13	37.4	119.9
H11	C1	C2	H12	234.7	240.0
H11	C1	C2	H113	125.3	120.0
H12	C1	C2	H113	250.5	240.0
O5	C2	O2	HO2	66.5	298.3
O2	C2	O5	C1	113.9	120.9
O2	C2	O5	C3	228.3	240.5
C1	C2	O5	C3	114.4	119.6
O5	C2	C1	H11	301.2	61.7
O5	C2	C1	H12	66.5	181.7
O5	C2	C1	H113	176.0	301.7
O5	C2	C3	C4	16.2	358.2
O5	C2	C3	O3	268.0	116.7
O5	C2	C3	O13	148.9	239.4
C2	O5	C5	C4	3.3	319.9
C2	O5	C5	H51	128.5	78.4
C2	O5	C5	H52	238.0	201.5
C3	C2	O2	HO2	299.7	180.3
O2	C2	C3	C1	242.3	239.0
O2	C2	C3	O5	130.8	119.5
C1	C2	C3	O5	248.5	240.4
C3	C2	C1	H11	54.8	179.7
C3	C2	C1	H12	180.0	299.8
C3	C2	C1	H113	289.5	59.7
C3	C2	O5	C5	347.8	26.4
C5	C4	C3	C2	346.1	338.9
O4	C4	C3	C2	218.1	220.8
C2	C3	C4	H4	106.3	97.2
C4	C3	C2	O3	108.2	241.5
C4	C3	C2	O13	227.2	118.7
O3	C3	C2	O13	119.0	237.3
C2	C3	O3	HO3	180.0	184.0
C2	C3	O13	H13	180.0	176.2
H11	C1	C2	O5	301.2	61.7
H11	C1	C2	C3	54.8	179.7
C2	C1	H11	H12	125.2	120.0
C2	C1	H11	H113	234.8	240.0
H12	C1	H11	H113	109.6	120.0
H12	C1	C2	O5	66.5	181.7
H12	C1	C2	C3	180.0	299.8
C2	C1	H12	H11	239.9	239.9
C2	C1	H12	H113	119.9	119.9
H11	C1	H12	H113	240.0	240.0
H113	C1	C2	O5	176.0	301.7
H113	C1	C2	C3	289.5	59.7
C2	C1	H113	H11	120.1	120.0
C2	C1	H113	H12	240.1	240.1
H11	C1	H113	H12	120.0	120.0
C5	O5	C2	C3	347.8	26.4
C4	C5	O5	H51	234.8	241.5
C4	C5	O5	H52	125.3	118.5
O5	C5	C4	O4	135.2	155.3
O5	C5	C4	C3	6.9	37.2
O5	C5	C4	H4	247.1	278.8
H51	C5	O5	H52	250.5	237.0
C2	C3	C4	C5	346.1	338.9
O5	C5	C4	H51	125.2	118.5
O5	C5	C4	H52	234.7	241.5
H51	C5	C4	H52	109.4	123.0
O4	C4	C5	C3	128.3	118.1
O4	C4	C5	H4	248.1	236.5
C5	C4	O4	HO4	180.0	61.4
C3	C4	C5	H4	119.8	118.4
C5	C4	C3	O3	94.2	220.4
C5	C4	C3	O13	213.3	97.8
O5	C5	H51	C4	238.0	246.0
O5	C5	H51	H52	119.0	123.0
C4	C5	H51	H52	241.0	237.0
H51	C5	C4	O4	9.9	36.8
H51	C5	C4	C3	241.6	278.6
H51	C5	C4	H4	121.8	160.3
O5	C5	H52	C4	122.1	114.0
O5	C5	H52	H51	241.0	237.0
C4	C5	H52	H51	119.0	123.0
H52	C5	C4	O4	260.5	273.8
H52	C5	C4	C3	132.2	155.6
H52	C5	C4	H4	12.4	37.3
C2	C3	C4	O4	218.1	220.8
O4	C4	C5	H51	9.9	36.8
O4	C4	C5	H52	260.5	273.8
C5	C4	O4	C3	237.4	247.3
C5	C4	O4	H4	118.9	123.6
C3	C4	O4	H4	241.5	236.3
O4	C4	C3	O3	326.2	102.3
O4	C4	C3	O13	85.3	339.7
C2	C3	C4	O3	251.9	118.5
C2	C3	C4	O13	132.9	241.1
C3	C4	C5	H51	241.6	278.6
C3	C4	C5	H52	132.2	155.6
C5	C4	C3	O4	128.0	118.1
C5	C4	C3	H4	239.9	241.7
O4	C4	C3	H4	111.9	123.6
C3	C4	O4	HO4	302.6	174.1
O3	C3	C4	O13	241.0	122.6
C4	C3	O3	HO3	69.0	298.5
C4	C3	O13	H13	308.2	61.4
H4	C4	C5	H51	121.8	160.3
H4	C4	C5	H52	12.4	37.3
C5	C4	H4	O4	238.3	236.4
C5	C4	H4	C3	116.2	112.8
O4	C4	H4	C3	237.9	236.3
H4	C4	O4	HO4	61.1	297.8
H4	C4	C3	O3	214.4	338.7
H4	C4	C3	O13	333.4	216.1
HO4	O4	C4	C3	302.6	174.1
HO4	O4	C4	H4	61.1	297.8
C2	C3	O3	C4	111.0	245.5
C2	C3	O3	O13	235.4	122.8
O3	C3	C4	H4	214.4	338.7
C4	C3	O3	O13	124.4	237.4
O3	C3	O13	H13	64.1	298.8
C2	C3	O13	C4	231.8	114.7
C2	C3	O13	O3	115.9	237.3
O13	C3	C4	H4	333.4	216.1
C4	C3	O13	O3	244.1	122.6
O13	C3	O3	HO3	304.5	61.1
HO3	O3	C3	O13	304.5	61.1