PDB Chemical Component PAO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PAO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.451 |
1.469 |
| N |
HN1 |
1.020 |
1.009 |
| N |
HN2 |
1.020 |
1.009 |
| CA |
CB |
1.533 |
1.529 |
| CA |
C |
1.523 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.530 |
1.529 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.116 |
1.089 |
| CG |
CD |
1.534 |
1.529 |
| CG |
HG1 |
1.116 |
1.090 |
| CG |
HG2 |
1.115 |
1.090 |
| CD |
NE |
1.455 |
1.464 |
| CD |
HD1 |
1.115 |
1.090 |
| CD |
HD2 |
1.116 |
1.089 |
| NE |
C1 |
1.337 |
1.348 |
| NE |
HNE |
1.019 |
0.970 |
| C |
O |
1.228 |
1.207 |
| C |
OXT |
1.228 |
1.343 |
| OXT |
HXT |
0.950 |
0.967 |
| C1 |
O1 |
1.231 |
1.211 |
| C1 |
C1P |
1.517 |
1.508 |
| C1P |
P |
1.810 |
1.822 |
| C1P |
HP1 |
1.114 |
1.090 |
| C1P |
HP2 |
1.114 |
1.090 |
| P |
O1P |
1.599 |
1.481 |
| P |
O2P |
1.587 |
1.609 |
| P |
O3P |
1.594 |
1.610 |
| O2P |
HOP2 |
0.951 |
0.968 |
| O3P |
HOP3 |
0.951 |
0.967 |
Bond Angles for PAO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN1 |
108.5 |
106.7 |
| CA |
N |
HN2 |
112.5 |
106.7 |
| N |
CA |
CB |
108.6 |
109.5 |
| N |
CA |
C |
107.8 |
109.4 |
| N |
CA |
HA |
111.9 |
109.4 |
| HN1 |
N |
HN2 |
112.6 |
106.7 |
| CB |
CA |
C |
111.4 |
109.5 |
| CB |
CA |
HA |
108.2 |
109.5 |
| CA |
CB |
CG |
115.5 |
109.5 |
| CA |
CB |
HB1 |
110.1 |
109.5 |
| CA |
CB |
HB2 |
110.0 |
109.4 |
| C |
CA |
HA |
109.0 |
109.5 |
| CA |
C |
O |
118.7 |
120.1 |
| CA |
C |
OXT |
118.5 |
120.0 |
| CG |
CB |
HB1 |
110.0 |
109.5 |
| CG |
CB |
HB2 |
110.0 |
109.5 |
| CB |
CG |
CD |
111.1 |
109.5 |
| CB |
CG |
HG1 |
111.7 |
109.5 |
| CB |
CG |
HG2 |
111.7 |
109.5 |
| HB1 |
CB |
HB2 |
100.2 |
109.5 |
| CD |
CG |
HG1 |
111.6 |
109.5 |
| CD |
CG |
HG2 |
111.6 |
109.5 |
| CG |
CD |
NE |
110.4 |
109.5 |
| CG |
CD |
HD1 |
111.9 |
109.5 |
| CG |
CD |
HD2 |
111.9 |
109.5 |
| HG1 |
CG |
HG2 |
98.7 |
109.4 |
| NE |
CD |
HD1 |
111.9 |
109.5 |
| NE |
CD |
HD2 |
111.8 |
109.4 |
| CD |
NE |
C1 |
123.4 |
120.0 |
| CD |
NE |
HNE |
122.8 |
120.0 |
| HD1 |
CD |
HD2 |
98.6 |
109.4 |
| C1 |
NE |
HNE |
113.8 |
120.0 |
| NE |
C1 |
O1 |
124.1 |
120.0 |
| NE |
C1 |
C1P |
113.7 |
120.0 |
| O |
C |
OXT |
122.8 |
120.0 |
| C |
OXT |
HXT |
118.5 |
120.0 |
| O1 |
C1 |
C1P |
122.1 |
120.0 |
| C1 |
C1P |
P |
108.6 |
109.5 |
| C1 |
C1P |
HP1 |
112.5 |
109.5 |
| C1 |
C1P |
HP2 |
112.5 |
109.5 |
| P |
C1P |
HP1 |
112.5 |
109.5 |
| P |
C1P |
HP2 |
112.5 |
109.5 |
| C1P |
P |
O1P |
110.1 |
109.4 |
| C1P |
P |
O2P |
109.8 |
109.5 |
| C1P |
P |
O3P |
109.2 |
109.5 |
| HP1 |
C1P |
HP2 |
98.0 |
109.5 |
| O1P |
P |
O2P |
108.9 |
109.5 |
| O1P |
P |
O3P |
109.1 |
109.4 |
| O2P |
P |
O3P |
109.8 |
109.5 |
| P |
O2P |
HOP2 |
109.8 |
106.9 |
| P |
O3P |
HOP3 |
109.2 |
106.7 |
Torsion Angles for PAO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N |
CA |
HN2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
239.1 |
240.0 |
| CB |
CA |
N |
HA |
119.4 |
120.0 |
| N |
CA |
CB |
CG |
188.7 |
300.0 |
| N |
CA |
CB |
HB1 |
314.0 |
60.0 |
| N |
CA |
CB |
HB2 |
63.5 |
180.0 |
| C |
CA |
N |
HA |
240.2 |
240.0 |
| N |
CA |
C |
O |
132.2 |
330.0 |
| N |
CA |
C |
OXT |
313.7 |
150.0 |
| CA |
N |
HN1 |
HN2 |
234.7 |
246.2 |
| HN1 |
N |
CA |
CB |
180.0 |
53.8 |
| HN1 |
N |
CA |
C |
300.9 |
173.8 |
| HN1 |
N |
CA |
HA |
60.7 |
293.8 |
| CA |
N |
HN2 |
HN1 |
123.0 |
113.8 |
| HN2 |
N |
CA |
CB |
54.7 |
300.0 |
| HN2 |
N |
CA |
C |
175.6 |
60.0 |
| HN2 |
N |
CA |
HA |
295.4 |
180.0 |
| CB |
CA |
N |
HN1 |
180.0 |
53.8 |
| CB |
CA |
N |
HN2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
118.6 |
120.0 |
| N |
CA |
CB |
HA |
238.3 |
240.0 |
| C |
CA |
CB |
HA |
119.8 |
120.1 |
| CB |
CA |
C |
O |
251.3 |
90.0 |
| CB |
CA |
C |
OXT |
72.8 |
270.0 |
| CG |
CB |
CA |
HB1 |
234.8 |
240.0 |
| CG |
CB |
CA |
HB2 |
125.2 |
120.0 |
| CA |
CB |
CG |
CD |
182.9 |
180.0 |
| CA |
CB |
CG |
HG1 |
308.2 |
300.0 |
| CA |
CB |
CG |
HG2 |
57.6 |
60.0 |
| HB1 |
CB |
CA |
HB2 |
250.5 |
240.0 |
| C |
CA |
N |
HN1 |
300.9 |
173.8 |
| C |
CA |
N |
HN2 |
175.6 |
60.0 |
| N |
CA |
C |
CB |
241.0 |
240.0 |
| N |
CA |
C |
HA |
121.6 |
119.9 |
| CB |
CA |
C |
HA |
240.7 |
239.9 |
| C |
CA |
CB |
CG |
70.2 |
180.0 |
| C |
CA |
CB |
HB1 |
195.4 |
300.0 |
| C |
CA |
CB |
HB2 |
304.9 |
60.1 |
| O |
C |
CA |
OXT |
178.5 |
180.0 |
| CA |
C |
OXT |
HXT |
180.1 |
180.0 |
| HA |
CA |
N |
HN1 |
60.7 |
293.8 |
| HA |
CA |
N |
HN2 |
295.4 |
180.0 |
| N |
CA |
HA |
CB |
119.6 |
120.0 |
| N |
CA |
HA |
C |
240.9 |
240.1 |
| CB |
CA |
HA |
C |
121.3 |
120.1 |
| HA |
CA |
CB |
CG |
310.4 |
60.0 |
| HA |
CA |
CB |
HB1 |
75.6 |
180.0 |
| HA |
CA |
CB |
HB2 |
185.1 |
300.0 |
| HA |
CA |
C |
O |
10.6 |
210.0 |
| HA |
CA |
C |
OXT |
192.1 |
30.1 |
| CG |
CB |
CA |
C |
70.2 |
180.0 |
| CG |
CB |
CA |
HA |
310.4 |
60.0 |
| CA |
CB |
CG |
HB1 |
125.3 |
120.0 |
| CA |
CB |
CG |
HB2 |
234.7 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
109.5 |
120.1 |
| CD |
CG |
CB |
HG1 |
234.7 |
240.0 |
| CD |
CG |
CB |
HG2 |
125.3 |
120.0 |
| CB |
CG |
CD |
NE |
197.9 |
180.0 |
| CB |
CG |
CD |
HD1 |
323.2 |
300.0 |
| CB |
CG |
CD |
HD2 |
72.7 |
60.0 |
| HG1 |
CG |
CB |
HG2 |
250.5 |
240.0 |
| HB1 |
CB |
CA |
C |
195.4 |
300.0 |
| HB1 |
CB |
CA |
HA |
75.6 |
180.0 |
| CA |
CB |
HB1 |
CG |
231.7 |
240.0 |
| CA |
CB |
HB1 |
HB2 |
115.9 |
120.0 |
| CG |
CB |
HB1 |
HB2 |
244.2 |
240.0 |
| HB1 |
CB |
CG |
CD |
57.6 |
60.0 |
| HB1 |
CB |
CG |
HG1 |
182.9 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
292.4 |
300.0 |
| HB2 |
CB |
CA |
C |
304.9 |
60.1 |
| HB2 |
CB |
CA |
HA |
185.1 |
300.0 |
| CA |
CB |
HB2 |
CG |
128.3 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
244.1 |
240.0 |
| CG |
CB |
HB2 |
HB1 |
115.8 |
120.0 |
| HB2 |
CB |
CG |
CD |
308.2 |
300.0 |
| HB2 |
CB |
CG |
HG1 |
73.4 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
182.9 |
179.9 |
| CD |
CG |
CB |
HB1 |
57.6 |
60.0 |
| CD |
CG |
CB |
HB2 |
308.2 |
300.0 |
| CB |
CG |
CD |
HG1 |
125.3 |
120.0 |
| CB |
CG |
CD |
HG2 |
234.7 |
240.0 |
| HG1 |
CG |
CD |
HG2 |
109.4 |
119.9 |
| NE |
CD |
CG |
HD1 |
234.7 |
240.0 |
| NE |
CD |
CG |
HD2 |
125.2 |
120.0 |
| CG |
CD |
NE |
C1 |
210.6 |
180.0 |
| CG |
CD |
NE |
HNE |
30.6 |
0.1 |
| HD1 |
CD |
CG |
HD2 |
250.5 |
240.0 |
| HG1 |
CG |
CB |
HB1 |
182.9 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
73.4 |
60.0 |
| CB |
CG |
HG1 |
CD |
235.0 |
240.0 |
| CB |
CG |
HG1 |
HG2 |
117.6 |
120.0 |
| CD |
CG |
HG1 |
HG2 |
242.5 |
240.0 |
| HG1 |
CG |
CD |
NE |
72.6 |
60.0 |
| HG1 |
CG |
CD |
HD1 |
197.9 |
180.0 |
| HG1 |
CG |
CD |
HD2 |
307.4 |
300.0 |
| HG2 |
CG |
CB |
HB1 |
292.4 |
300.0 |
| HG2 |
CG |
CB |
HB2 |
182.9 |
179.9 |
| CB |
CG |
HG2 |
CD |
125.0 |
120.0 |
| CB |
CG |
HG2 |
HG1 |
242.4 |
240.0 |
| CD |
CG |
HG2 |
HG1 |
117.5 |
120.0 |
| HG2 |
CG |
CD |
NE |
323.2 |
300.0 |
| HG2 |
CG |
CD |
HD1 |
88.5 |
60.1 |
| HG2 |
CG |
CD |
HD2 |
198.0 |
180.0 |
| NE |
CD |
CG |
HG1 |
72.6 |
60.0 |
| NE |
CD |
CG |
HG2 |
323.2 |
300.0 |
| CG |
CD |
NE |
HD1 |
125.3 |
120.0 |
| CG |
CD |
NE |
HD2 |
234.8 |
240.0 |
| HD1 |
CD |
NE |
HD2 |
109.5 |
120.0 |
| C1 |
NE |
CD |
HNE |
180.0 |
179.9 |
| CD |
NE |
C1 |
O1 |
1.4 |
360.0 |
| CD |
NE |
C1 |
C1P |
178.6 |
180.0 |
| HD1 |
CD |
CG |
HG1 |
197.9 |
180.0 |
| HD1 |
CD |
CG |
HG2 |
88.5 |
60.1 |
| CG |
CD |
HD1 |
NE |
235.5 |
240.0 |
| CG |
CD |
HD1 |
HD2 |
117.8 |
120.0 |
| NE |
CD |
HD1 |
HD2 |
242.2 |
240.1 |
| HD1 |
CD |
NE |
C1 |
85.4 |
60.0 |
| HD1 |
CD |
NE |
HNE |
265.3 |
240.1 |
| HD2 |
CD |
CG |
HG1 |
307.4 |
300.0 |
| HD2 |
CD |
CG |
HG2 |
198.0 |
180.0 |
| CG |
CD |
HD2 |
NE |
124.4 |
120.0 |
| CG |
CD |
HD2 |
HD1 |
242.2 |
240.0 |
| NE |
CD |
HD2 |
HD1 |
117.8 |
120.0 |
| HD2 |
CD |
NE |
C1 |
335.9 |
300.0 |
| HD2 |
CD |
NE |
HNE |
155.8 |
120.1 |
| C1 |
NE |
CD |
HD1 |
85.4 |
60.0 |
| C1 |
NE |
CD |
HD2 |
335.9 |
300.0 |
| CD |
NE |
C1 |
HNE |
180.0 |
180.1 |
| O1 |
C1 |
NE |
C1P |
182.9 |
180.0 |
| NE |
C1 |
C1P |
P |
257.8 |
270.0 |
| NE |
C1 |
C1P |
HP1 |
23.0 |
30.0 |
| NE |
C1 |
C1P |
HP2 |
132.5 |
150.0 |
| HNE |
NE |
CD |
HD1 |
265.3 |
240.1 |
| HNE |
NE |
CD |
HD2 |
155.8 |
120.1 |
| CD |
NE |
HNE |
C1 |
180.0 |
179.9 |
| HNE |
NE |
C1 |
O1 |
181.5 |
179.9 |
| HNE |
NE |
C1 |
C1P |
358.6 |
359.9 |
| O |
C |
CA |
HA |
10.6 |
210.0 |
| CA |
C |
O |
OXT |
181.6 |
180.0 |
| O |
C |
OXT |
HXT |
1.7 |
0.0 |
| OXT |
C |
CA |
HA |
192.1 |
30.1 |
| CA |
C |
OXT |
O |
178.4 |
180.0 |
| O1 |
C1 |
NE |
HNE |
181.5 |
179.9 |
| NE |
C1 |
O1 |
C1P |
176.9 |
180.0 |
| O1 |
C1 |
C1P |
P |
75.0 |
90.0 |
| O1 |
C1 |
C1P |
HP1 |
200.2 |
210.0 |
| O1 |
C1 |
C1P |
HP2 |
309.7 |
330.0 |
| C1P |
C1 |
NE |
HNE |
358.6 |
359.9 |
| NE |
C1 |
C1P |
O1 |
182.8 |
180.0 |
| P |
C1P |
C1 |
HP1 |
234.8 |
240.0 |
| P |
C1P |
C1 |
HP2 |
125.2 |
120.0 |
| C1 |
C1P |
P |
O1P |
46.5 |
60.0 |
| C1 |
C1P |
P |
O2P |
286.6 |
180.0 |
| C1 |
C1P |
P |
O3P |
166.2 |
300.0 |
| HP1 |
C1P |
C1 |
HP2 |
250.5 |
240.0 |
| C1 |
C1P |
P |
HP1 |
125.3 |
120.0 |
| C1 |
C1P |
P |
HP2 |
234.8 |
240.0 |
| HP1 |
C1P |
P |
HP2 |
109.5 |
120.0 |
| O1P |
P |
C1P |
O2P |
119.9 |
240.0 |
| O1P |
P |
C1P |
O3P |
240.3 |
120.0 |
| O2P |
P |
C1P |
O3P |
120.4 |
240.0 |
| C1P |
P |
O2P |
HOP2 |
180.0 |
180.0 |
| C1P |
P |
O3P |
HOP3 |
180.0 |
300.0 |
| C1 |
C1P |
HP1 |
P |
236.9 |
240.0 |
| C1 |
C1P |
HP1 |
HP2 |
118.5 |
120.0 |
| P |
C1P |
HP1 |
HP2 |
241.5 |
240.0 |
| HP1 |
C1P |
P |
O1P |
281.2 |
300.0 |
| HP1 |
C1P |
P |
O2P |
161.4 |
60.0 |
| HP1 |
C1P |
P |
O3P |
40.9 |
180.0 |
| C1 |
C1P |
HP2 |
P |
123.1 |
120.0 |
| C1 |
C1P |
HP2 |
HP1 |
241.5 |
240.0 |
| P |
C1P |
HP2 |
HP1 |
118.4 |
120.0 |
| HP2 |
C1P |
P |
O1P |
171.7 |
180.0 |
| HP2 |
C1P |
P |
O2P |
51.8 |
300.0 |
| HP2 |
C1P |
P |
O3P |
291.4 |
60.0 |
| O1P |
P |
C1P |
HP1 |
281.2 |
300.0 |
| O1P |
P |
C1P |
HP2 |
171.7 |
180.0 |
| C1P |
P |
O1P |
O2P |
239.6 |
120.0 |
| C1P |
P |
O1P |
O3P |
119.8 |
240.0 |
| O2P |
P |
O1P |
O3P |
240.3 |
120.0 |
| O1P |
P |
O2P |
HOP2 |
59.4 |
300.0 |
| O1P |
P |
O3P |
HOP3 |
300.4 |
180.0 |
| O2P |
P |
C1P |
HP1 |
161.4 |
60.0 |
| O2P |
P |
C1P |
HP2 |
51.8 |
300.0 |
| C1P |
P |
O2P |
O1P |
120.6 |
240.0 |
| C1P |
P |
O2P |
O3P |
239.9 |
120.0 |
| O1P |
P |
O2P |
O3P |
119.3 |
240.0 |
| O2P |
P |
O3P |
HOP3 |
59.5 |
60.0 |
| O3P |
P |
C1P |
HP1 |
40.9 |
180.0 |
| O3P |
P |
C1P |
HP2 |
291.4 |
60.0 |
| C1P |
P |
O3P |
O1P |
239.6 |
120.0 |
| C1P |
P |
O3P |
O2P |
120.5 |
239.9 |
| O1P |
P |
O3P |
O2P |
240.8 |
120.0 |
| O3P |
P |
O2P |
HOP2 |
300.1 |
60.0 |
| HOP2 |
O2P |
P |
O3P |
300.1 |
60.0 |