PDB Chemical Component PAM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PAM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.246	1.343
C1	O2	1.245	1.207
C1	C2	1.512	1.507
O1	HO1	0.950	0.966
C2	C3	1.518	1.530
C2	H21	1.115	1.090
C2	H22	1.115	1.090
C3	C4	1.522	1.530
C3	H31	1.115	1.089
C3	H32	1.114	1.088
C4	C5	1.529	1.529
C4	H41	1.116	1.090
C4	H42	1.115	1.090
C5	C6	1.532	1.531
C5	H51	1.114	1.089
C5	H52	1.115	1.090
C6	C7	1.527	1.529
C6	H61	1.115	1.090
C6	H62	1.114	1.089
C7	C8	1.538	1.529
C7	H71	1.115	1.089
C7	H72	1.115	1.090
C8	C9	1.515	1.507
C8	H81	1.116	1.089
C8	H82	1.116	1.090
C9	C10	1.392	1.310
C9	H9	1.102	1.080
C10	C11	1.520	1.506
C10	H10	1.103	1.080
C11	C12	1.528	1.529
C11	H111	1.115	1.090
C11	H112	1.115	1.090
C12	C13	1.520	1.530
C12	H121	1.115	1.090
C12	H122	1.115	1.089
C13	C14	1.520	1.530
C13	H131	1.115	1.089
C13	H132	1.114	1.089
C14	C15	1.507	1.530
C14	H141	1.115	1.090
C14	H142	1.115	1.089
C15	C16	1.501	1.530
C15	H151	1.115	1.089
C15	H152	1.115	1.090
C16	H161	1.116	1.091
C16	H162	1.115	1.090
C16	H163	1.115	1.089

Bond Angles for PAM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	O2	122.6	119.9
O1	C1	C2	119.1	120.0
C1	O1	HO1	122.6	120.1
O2	C1	C2	118.2	120.0
C1	C2	C3	113.6	109.5
C1	C2	H21	110.7	109.4
C1	C2	H22	110.7	109.5
C3	C2	H21	110.7	109.5
C3	C2	H22	110.7	109.5
C2	C3	C4	109.7	109.4
C2	C3	H31	112.1	109.4
C2	C3	H32	112.1	109.5
H21	C2	H22	99.5	109.4
C4	C3	H31	112.1	109.4
C4	C3	H32	112.1	109.5
C3	C4	C5	112.7	109.5
C3	C4	H41	111.0	109.4
C3	C4	H42	111.1	109.5
H31	C3	H32	98.3	109.6
C5	C4	H41	111.1	109.5
C5	C4	H42	111.0	109.5
C4	C5	C6	112.3	109.5
C4	C5	H51	111.2	109.5
C4	C5	H52	111.2	109.5
H41	C4	H42	99.3	109.4
C6	C5	H51	111.2	109.5
C6	C5	H52	111.2	109.5
C5	C6	C7	112.9	109.5
C5	C6	H61	111.0	109.5
C5	C6	H62	111.0	109.5
H51	C5	H52	99.2	109.5
C7	C6	H61	110.9	109.5
C7	C6	H62	110.9	109.5
C6	C7	C8	112.6	109.5
C6	C7	H71	111.1	109.5
C6	C7	H72	111.1	109.5
H61	C6	H62	99.4	109.5
C8	C7	H71	111.0	109.5
C8	C7	H72	111.0	109.5
C7	C8	C9	115.2	109.5
C7	C8	H81	110.2	109.5
C7	C8	H82	110.2	109.4
H71	C7	H72	99.3	109.5
C9	C8	H81	110.1	109.5
C9	C8	H82	110.1	109.4
C8	C9	C10	120.5	120.0
C8	C9	H9	124.0	120.0
H81	C8	H82	100.0	109.5
C10	C9	H9	115.5	120.0
C9	C10	C11	120.6	120.0
C9	C10	H10	115.3	120.0
C11	C10	H10	124.0	120.0
C10	C11	C12	115.0	109.5
C10	C11	H111	110.2	109.5
C10	C11	H112	110.2	109.4
C12	C11	H111	110.1	109.5
C12	C11	H112	110.2	109.5
C11	C12	C13	112.2	109.5
C11	C12	H121	111.2	109.5
C11	C12	H122	111.2	109.5
H111	C11	H112	100.0	109.4
C13	C12	H121	111.2	109.4
C13	C12	H122	111.2	109.5
C12	C13	C14	112.8	109.5
C12	C13	H131	111.0	109.5
C12	C13	H132	111.0	109.5
H121	C12	H122	99.1	109.4
C14	C13	H131	111.0	109.5
C14	C13	H132	111.0	109.4
C13	C14	C15	112.9	109.5
C13	C14	H141	111.0	109.5
C13	C14	H142	111.0	109.4
H131	C13	H132	99.4	109.5
C15	C14	H141	110.9	109.5
C15	C14	H142	110.9	109.4
C14	C15	C16	112.6	109.5
C14	C15	H151	111.1	109.6
C14	C15	H152	111.1	109.4
H141	C14	H142	99.4	109.4
C16	C15	H151	111.0	109.5
C16	C15	H152	111.1	109.4
C15	C16	H161	112.6	109.5
C15	C16	H162	111.1	109.4
C15	C16	H163	111.1	109.6
H151	C15	H152	99.2	109.4
H161	C16	H162	111.0	109.5
H161	C16	H163	111.0	109.5
H162	C16	H163	99.3	109.4

Torsion Angles for PAM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C1	O1	C2	178.9	180.1
O1	C1	C2	C3	324.5	180.0
O1	C1	C2	H21	89.8	60.1
O1	C1	C2	H22	199.2	300.1
O1	C1	O2	C2	181.0	179.9
O2	C1	O1	HO1	179.9	0.1
O2	C1	C2	C3	145.5	360.0
O2	C1	C2	H21	270.8	240.0
O2	C1	C2	H22	20.2	120.0
O1	C1	C2	O2	179.0	180.1
C2	C1	O1	HO1	1.0	180.0
C3	C2	C1	H21	234.7	120.0
C3	C2	C1	H22	125.3	239.9
C1	C2	C3	C4	171.4	180.0
C1	C2	C3	H31	296.7	60.1
C1	C2	C3	H32	46.2	300.0
H21	C2	C1	H22	250.6	119.9
HO1	O1	C1	O2	179.9	0.1
HO1	O1	C1	C2	1.0	180.0
C1	C2	C3	H21	125.3	240.0
C1	C2	C3	H22	234.7	120.1
H21	C2	C3	H22	109.4	240.0
C4	C3	C2	H31	234.7	119.9
C4	C3	C2	H32	125.2	240.0
C2	C3	C4	C5	185.3	180.0
C2	C3	C4	H41	310.5	60.1
C2	C3	C4	H42	60.0	300.1
H31	C3	C2	H32	250.5	120.1
C1	C2	H21	C3	233.1	120.0
C1	C2	H21	H22	116.5	240.0
C3	C2	H21	H22	243.4	120.0
H21	C2	C3	C4	46.1	299.9
H21	C2	C3	H31	171.4	180.0
H21	C2	C3	H32	280.9	60.0
C1	C2	H22	C3	126.9	239.9
C1	C2	H22	H21	243.5	120.0
C3	C2	H22	H21	116.6	240.0
H22	C2	C3	C4	296.7	59.9
H22	C2	C3	H31	62.0	300.0
H22	C2	C3	H32	171.5	179.9
C4	C3	C2	H21	46.1	299.9
C4	C3	C2	H22	296.7	59.9
C2	C3	C4	H31	125.3	240.1
C2	C3	C4	H32	234.8	120.0
H31	C3	C4	H32	109.5	239.9
C5	C4	C3	H41	234.7	120.0
C5	C4	C3	H42	125.3	239.9
C3	C4	C5	C6	183.8	180.0
C3	C4	C5	H51	309.1	60.0
C3	C4	C5	H52	58.6	300.1
H41	C4	C3	H42	250.6	120.0
H31	C3	C2	H21	171.4	180.0
H31	C3	C2	H22	62.0	300.0
C2	C3	H31	C4	236.1	119.9
C2	C3	H31	H32	118.0	240.0
C4	C3	H31	H32	241.9	120.1
H31	C3	C4	C5	60.0	299.9
H31	C3	C4	H41	185.3	180.0
H31	C3	C4	H42	294.7	60.0
H32	C3	C2	H21	280.9	60.0
H32	C3	C2	H22	171.5	179.9
C2	C3	H32	C4	123.9	240.0
C2	C3	H32	H31	241.9	120.0
C4	C3	H32	H31	118.1	240.0
H32	C3	C4	C5	310.5	60.0
H32	C3	C4	H41	75.8	300.1
H32	C3	C4	H42	185.2	180.1
C5	C4	C3	H31	60.0	299.9
C5	C4	C3	H32	310.5	60.0
C3	C4	C5	H41	125.3	240.0
C3	C4	C5	H42	234.7	120.1
H41	C4	C5	H42	109.4	240.1
C6	C5	C4	H51	234.8	120.0
C6	C5	C4	H52	125.2	240.0
C4	C5	C6	C7	278.5	180.0
C4	C5	C6	H61	43.7	60.0
C4	C5	C6	H62	153.2	300.0
H51	C5	C4	H52	250.4	120.0
H41	C4	C3	H31	185.3	180.0
H41	C4	C3	H32	75.8	300.1
C3	C4	H41	C5	233.8	120.0
C3	C4	H41	H42	116.9	240.0
C5	C4	H41	H42	243.1	120.0
H41	C4	C5	C6	58.6	300.0
H41	C4	C5	H51	183.8	180.0
H41	C4	C5	H52	293.4	60.0
H42	C4	C3	H31	294.7	60.0
H42	C4	C3	H32	185.2	180.1
C3	C4	H42	C5	126.2	239.9
C3	C4	H42	H41	243.1	120.0
C5	C4	H42	H41	116.9	240.0
H42	C4	C5	C6	309.1	59.9
H42	C4	C5	H51	74.4	299.9
H42	C4	C5	H52	183.9	180.0
C6	C5	C4	H41	58.6	300.0
C6	C5	C4	H42	309.1	59.9
C4	C5	C6	H51	125.3	240.0
C4	C5	C6	H52	234.8	120.0
H51	C5	C6	H52	109.5	240.0
C7	C6	C5	H61	234.8	120.0
C7	C6	C5	H62	125.3	240.0
C5	C6	C7	C8	162.4	180.0
C5	C6	C7	H71	287.6	60.0
C5	C6	C7	H72	37.1	300.0
H61	C6	C5	H62	250.5	120.0
H51	C5	C4	H41	183.8	180.0
H51	C5	C4	H42	74.4	299.9
C4	C5	H51	C6	234.1	120.0
C4	C5	H51	H52	117.1	240.0
C6	C5	H51	H52	242.9	120.0
H51	C5	C6	C7	153.2	300.0
H51	C5	C6	H61	278.4	180.0
H51	C5	C6	H62	28.0	60.0
H52	C5	C4	H41	293.4	60.0
H52	C5	C4	H42	183.9	180.0
C4	C5	H52	C6	125.8	240.0
C4	C5	H52	H51	242.9	120.0
C6	C5	H52	H51	117.1	240.0
H52	C5	C6	C7	43.7	60.0
H52	C5	C6	H61	168.9	300.0
H52	C5	C6	H62	278.4	180.0
C7	C6	C5	H51	153.2	300.0
C7	C6	C5	H52	43.7	60.0
C5	C6	C7	H61	125.3	240.0
C5	C6	C7	H62	234.7	120.0
H61	C6	C7	H62	109.4	240.0
C8	C7	C6	H71	234.7	120.0
C8	C7	C6	H72	125.3	240.0
C6	C7	C8	C9	59.4	180.0
C6	C7	C8	H81	184.7	60.0
C6	C7	C8	H82	294.2	300.0
H71	C7	C6	H72	250.5	120.0
H61	C6	C5	H51	278.4	180.0
H61	C6	C5	H52	168.9	300.0
C5	C6	H61	C7	233.6	120.0
C5	C6	H61	H62	116.9	240.0
C7	C6	H61	H62	243.3	120.0
H61	C6	C7	C8	37.1	300.0
H61	C6	C7	H71	162.4	180.0
H61	C6	C7	H72	271.9	60.0
H62	C6	C5	H51	28.0	60.0
H62	C6	C5	H52	278.4	180.0
C5	C6	H62	C7	126.4	240.0
C5	C6	H62	H61	243.1	120.0
C7	C6	H62	H61	116.7	240.0
H62	C6	C7	C8	287.7	60.0
H62	C6	C7	H71	52.9	300.0
H62	C6	C7	H72	162.4	180.0
C8	C7	C6	H61	37.1	300.0
C8	C7	C6	H62	287.7	60.0
C6	C7	C8	H71	125.3	240.0
C6	C7	C8	H72	234.7	120.0
H71	C7	C8	H72	109.4	240.0
C9	C8	C7	H81	234.7	120.0
C9	C8	C7	H82	125.3	240.1
C7	C8	C9	C10	196.6	127.0
C7	C8	C9	H9	16.6	307.0
H81	C8	C7	H82	250.6	120.0
H71	C7	C6	H61	162.4	180.0
H71	C7	C6	H62	52.9	300.0
C6	C7	H71	C8	233.8	120.0
C6	C7	H71	H72	116.9	240.0
C8	C7	H71	H72	243.1	120.0
H71	C7	C8	C9	294.2	300.0
H71	C7	C8	H81	59.4	180.0
H71	C7	C8	H82	168.9	60.0
H72	C7	C6	H61	271.9	60.0
H72	C7	C6	H62	162.4	180.0
C6	C7	H72	C8	126.1	240.0
C6	C7	H72	H71	243.0	120.0
C8	C7	H72	H71	116.9	240.0
H72	C7	C8	C9	184.7	60.0
H72	C7	C8	H81	310.0	300.0
H72	C7	C8	H82	59.4	180.0
C9	C8	C7	H71	294.2	300.0
C9	C8	C7	H72	184.7	60.0
C7	C8	C9	H81	125.3	240.0
C7	C8	C9	H82	234.7	119.9
H81	C8	C9	H82	109.4	240.0
C10	C9	C8	H9	180.0	180.0
C8	C9	C10	C11	359.9	6.9
C8	C9	C10	H10	180.0	187.0
H81	C8	C7	H71	59.4	180.0
H81	C8	C7	H72	310.0	300.0
C7	C8	H81	C9	231.9	120.0
C7	C8	H81	H82	116.0	240.0
C9	C8	H81	H82	244.1	120.0
H81	C8	C9	C10	71.2	247.1
H81	C8	C9	H9	251.3	67.0
H82	C8	C7	H71	168.9	60.0
H82	C8	C7	H72	59.4	180.0
C7	C8	H82	C9	128.1	240.0
C7	C8	H82	H81	244.0	120.0
C9	C8	H82	H81	115.9	240.0
H82	C8	C9	C10	321.9	7.1
H82	C8	C9	H9	141.9	187.1
C10	C9	C8	H81	71.2	247.1
C10	C9	C8	H82	321.9	7.1
C8	C9	C10	H9	180.0	180.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	C12	159.4	127.2
C9	C10	C11	H111	284.7	7.2
C9	C10	C11	H112	34.2	247.2
H9	C9	C8	H81	251.3	67.0
H9	C9	C8	H82	141.9	187.1
C8	C9	H9	C10	180.0	180.0
H9	C9	C10	C11	179.9	187.0
H9	C9	C10	H10	360.0	7.0
C11	C10	C9	H9	179.9	187.0
C9	C10	C11	H10	180.0	180.0
C12	C11	C10	H111	234.8	120.1
C12	C11	C10	H112	125.3	240.0
C10	C11	C12	C13	60.8	180.0
C10	C11	C12	H121	186.1	60.0
C10	C11	C12	H122	295.5	300.0
H111	C11	C10	H112	250.5	119.9
H10	C10	C9	H9	360.0	7.0
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	339.4	307.2
H10	C10	C11	H111	104.6	187.1
H10	C10	C11	H112	214.1	67.2
C12	C11	C10	H10	339.4	307.2
C10	C11	C12	H111	125.3	240.0
C10	C11	C12	H112	234.7	120.0
H111	C11	C12	H112	109.4	240.0
C13	C12	C11	H121	234.7	120.0
C13	C12	C11	H122	125.3	240.0
C11	C12	C13	C14	74.5	180.0
C11	C12	C13	H131	199.7	60.0
C11	C12	C13	H132	309.2	300.0
H121	C12	C11	H122	250.5	120.0
H111	C11	C10	H10	104.6	187.1
C10	C11	H111	C12	232.0	120.1
C10	C11	H111	H112	116.1	240.1
C12	C11	H111	H112	244.0	120.0
H111	C11	C12	C13	295.6	300.0
H111	C11	C12	H121	60.8	180.0
H111	C11	C12	H122	170.3	60.0
H112	C11	C10	H10	214.1	67.2
C10	C11	H112	C12	128.0	240.0
C10	C11	H112	H111	244.0	120.0
C12	C11	H112	H111	116.0	240.0
H112	C11	C12	C13	186.1	60.0
H112	C11	C12	H121	311.4	300.0
H112	C11	C12	H122	60.8	180.0
C13	C12	C11	H111	295.6	300.0
C13	C12	C11	H112	186.1	60.0
C11	C12	C13	H121	125.3	239.9
C11	C12	C13	H122	234.7	120.0
H121	C12	C13	H122	109.4	240.1
C14	C13	C12	H131	234.8	120.0
C14	C13	C12	H132	125.3	240.0
C12	C13	C14	C15	74.7	180.0
C12	C13	C14	H141	200.0	59.9
C12	C13	C14	H142	309.5	300.0
H131	C13	C12	H132	250.5	120.0
H121	C12	C11	H111	60.8	180.0
H121	C12	C11	H112	311.4	300.0
C11	C12	H121	C13	234.2	120.0
C11	C12	H121	H122	117.1	240.0
C13	C12	H121	H122	242.9	119.9
H121	C12	C13	C14	309.2	300.1
H121	C12	C13	H131	74.5	180.0
H121	C12	C13	H132	184.0	60.0
H122	C12	C11	H111	170.3	60.0
H122	C12	C11	H112	60.8	180.0
C11	C12	H122	C13	125.9	240.0
C11	C12	H122	H121	242.9	120.0
C13	C12	H122	H121	117.1	240.1
H122	C12	C13	C14	199.8	60.0
H122	C12	C13	H131	325.0	300.0
H122	C12	C13	H132	74.5	179.9
C14	C13	C12	H121	309.2	300.1
C14	C13	C12	H122	199.8	60.0
C12	C13	C14	H131	125.2	240.0
C12	C13	C14	H132	234.7	120.0
H131	C13	C14	H132	109.5	240.0
C15	C14	C13	H141	234.8	120.1
C15	C14	C13	H142	125.3	240.1
C13	C14	C15	C16	162.7	180.0
C13	C14	C15	H151	288.0	59.9
C13	C14	C15	H152	37.4	299.9
H141	C14	C13	H142	250.5	120.0
H131	C13	C12	H121	74.5	180.0
H131	C13	C12	H122	325.0	300.0
C12	C13	H131	C14	233.7	120.0
C12	C13	H131	H132	116.9	240.0
C14	C13	H131	H132	243.2	120.0
H131	C13	C14	C15	309.5	300.1
H131	C13	C14	H141	74.7	180.0
H131	C13	C14	H142	184.2	60.0
H132	C13	C12	H121	184.0	60.0
H132	C13	C12	H122	74.5	179.9
C12	C13	H132	C14	126.3	240.0
C12	C13	H132	H131	243.1	120.0
C14	C13	H132	H131	116.8	240.0
H132	C13	C14	C15	200.0	60.1
H132	C13	C14	H141	325.2	300.0
H132	C13	C14	H142	74.7	180.0
C15	C14	C13	H131	309.5	300.1
C15	C14	C13	H132	200.0	60.1
C13	C14	C15	H141	125.3	239.9
C13	C14	C15	H142	234.7	119.9
H141	C14	C15	H142	109.4	240.0
C16	C15	C14	H151	234.7	120.1
C16	C15	C14	H152	125.3	240.1
C14	C15	C16	H161	180.0	180.0
C14	C15	C16	H162	305.3	299.9
C14	C15	C16	H163	54.8	59.9
H151	C15	C14	H152	250.5	120.0
H141	C14	C13	H131	74.7	180.0
H141	C14	C13	H132	325.2	300.0
C13	C14	H141	C15	233.6	120.1
C13	C14	H141	H142	116.9	240.0
C15	C14	H141	H142	243.2	120.0
H141	C14	C15	C16	37.4	300.1
H141	C14	C15	H151	162.7	180.0
H141	C14	C15	H152	272.1	60.0
H142	C14	C13	H131	184.2	60.0
H142	C14	C13	H132	74.7	180.0
C13	C14	H142	C15	126.4	240.0
C13	C14	H142	H141	243.1	120.0
C15	C14	H142	H141	116.8	240.0
H142	C14	C15	C16	288.0	60.1
H142	C14	C15	H151	53.2	299.9
H142	C14	C15	H152	162.7	180.0
C16	C15	C14	H141	37.4	300.1
C16	C15	C14	H142	288.0	60.1
C14	C15	C16	H151	125.3	239.8
C14	C15	C16	H152	234.7	119.9
H151	C15	C16	H152	109.4	240.1
H161	C16	C15	H162	234.8	240.0
H161	C16	C15	H163	125.3	120.1
H162	C16	C15	H163	250.5	240.0
H151	C15	C14	H141	162.7	180.0
H151	C15	C14	H142	53.2	299.9
C14	C15	H151	C16	233.9	120.1
C14	C15	H151	H152	117.0	240.0
C16	C15	H151	H152	243.1	119.9
H151	C15	C16	H161	54.7	300.1
H151	C15	C16	H162	180.0	60.1
H151	C15	C16	H163	289.5	180.0
H152	C15	C14	H141	272.1	60.0
H152	C15	C14	H142	162.7	180.0
C14	C15	H152	C16	126.1	240.0
C14	C15	H152	H151	243.0	120.0
C16	C15	H152	H151	116.9	240.0
H152	C15	C16	H161	305.3	60.0
H152	C15	C16	H162	70.6	180.0
H152	C15	C16	H163	180.1	300.0
H161	C16	C15	H151	54.7	300.1
H161	C16	C15	H152	305.3	60.0
C15	C16	H161	H162	125.3	119.9
C15	C16	H161	H163	234.7	239.9
H162	C16	H161	H163	109.4	119.9
H162	C16	C15	H151	180.0	60.1
H162	C16	C15	H152	70.6	180.0
C15	C16	H162	H161	233.9	240.0
C15	C16	H162	H163	117.0	120.1
H161	C16	H162	H163	243.1	240.0
H163	C16	C15	H151	289.5	180.0
H163	C16	C15	H152	180.1	300.0
C15	C16	H163	H161	126.1	120.1
C15	C16	H163	H162	243.0	240.1
H161	C16	H163	H162	116.9	120.0