PDB Chemical Component PAL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PAL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
P	O1P	1.456	1.479
P	O2P	1.500	1.610
P	O3P	1.535	1.609
P	C1P	1.839	1.823
O2P	HOP2	0.950	0.967
O3P	HOP3	0.950	0.967
C1P	C1	1.497	1.507
C1P	H1P1	1.115	1.089
C1P	H1P2	1.115	1.091
C1	O1	1.249	1.213
C1	N2	1.288	1.346
N2	C2	1.408	1.465
N2	HN2	1.020	0.970
C2	C4	1.482	1.507
C2	C3	1.578	1.529
C2	H2	1.115	1.090
C4	O2	1.275	1.208
C4	O3	1.250	1.342
O3	HO3	0.950	0.967
C3	C5	1.520	1.506
C3	H31	1.116	1.090
C3	H32	1.115	1.090
C5	O4	1.293	1.208
C5	O5	1.269	1.342
O5	HO5	0.950	0.966

Bond Angles for PAL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1P	P	O2P	112.2	109.5
O1P	P	O3P	111.7	109.5
O1P	P	C1P	113.0	109.4
O2P	P	O3P	110.0	109.5
O2P	P	C1P	106.2	109.5
P	O2P	HOP2	112.2	106.8
O3P	P	C1P	103.2	109.5
P	O3P	HOP3	111.7	106.8
P	C1P	C1	110.5	109.5
P	C1P	H1P1	111.9	109.6
P	C1P	H1P2	111.9	109.4
C1	C1P	H1P1	111.8	109.5
C1	C1P	H1P2	111.8	109.5
C1P	C1	O1	122.1	120.0
C1P	C1	N2	118.3	120.0
H1P1	C1P	H1P2	98.6	109.4
O1	C1	N2	119.5	120.0
C1	N2	C2	128.5	120.1
C1	N2	HN2	110.6	120.0
C2	N2	HN2	121.0	119.9
N2	C2	C4	117.3	109.5
N2	C2	C3	110.5	109.5
N2	C2	H2	103.1	109.4
C4	C2	C3	109.3	109.6
C4	C2	H2	104.3	109.4
C2	C4	O2	120.7	120.1
C2	C4	O3	121.2	120.0
C3	C2	H2	112.1	109.4
C2	C3	C5	115.9	109.5
C2	C3	H31	109.9	109.5
C2	C3	H32	109.9	109.4
O2	C4	O3	118.2	120.0
C4	O3	HO3	121.2	120.0
C5	C3	H31	109.9	109.4
C5	C3	H32	109.9	109.5
C3	C5	O4	121.4	120.0
C3	C5	O5	118.5	120.1
H31	C3	H32	100.3	109.4
O4	C5	O5	120.2	120.0
C5	O5	HO5	118.4	120.0

Torsion Angles for PAL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2P	P	O1P	O3P	124.0	120.0
O2P	P	O1P	C1P	239.9	240.0
O1P	P	O2P	HOP2	180.0	300.0
O3P	P	O1P	C1P	115.8	120.0
O1P	P	O3P	HOP3	180.1	180.0
O1P	P	C1P	C1	37.5	60.0
O1P	P	C1P	H1P1	162.8	300.0
O1P	P	C1P	H1P2	272.3	180.0
O1P	P	O2P	O3P	235.0	240.0
O1P	P	O2P	C1P	124.0	119.9
O3P	P	O2P	C1P	249.0	240.0
O2P	P	O3P	HOP3	54.8	60.0
O2P	P	C1P	C1	161.0	180.0
O2P	P	C1P	H1P1	286.3	59.9
O2P	P	C1P	H1P2	35.8	300.0
O1P	P	O3P	O2P	125.3	120.0
O1P	P	O3P	C1P	238.3	240.0
O2P	P	O3P	C1P	113.0	120.0
O3P	P	O2P	HOP2	304.9	60.0
O3P	P	C1P	C1	276.7	300.0
O3P	P	C1P	H1P1	42.0	179.9
O3P	P	C1P	H1P2	151.5	60.0
O1P	P	C1P	O2P	236.5	240.0
O1P	P	C1P	O3P	120.8	120.0
O2P	P	C1P	O3P	244.3	240.0
C1P	P	O2P	HOP2	56.0	180.1
C1P	P	O3P	HOP3	301.8	299.9
C1	C1P	P	H1P1	234.7	120.1
C1	C1P	P	H1P2	125.2	240.0
P	C1P	C1	O1	71.8	89.9
P	C1P	C1	N2	256.9	270.0
H1P1	C1P	P	H1P2	250.5	119.9
HOP2	O2P	P	O3P	304.9	60.0
HOP2	O2P	P	C1P	56.0	180.1
HOP3	O3P	P	C1P	301.8	299.9
P	C1P	C1	H1P1	125.3	239.9
P	C1P	C1	H1P2	234.7	120.0
H1P1	C1P	C1	H1P2	109.4	240.1
O1	C1	C1P	N2	174.9	179.9
C1P	C1	N2	C2	181.4	180.0
C1P	C1	N2	HN2	1.4	360.0
P	C1P	H1P1	C1	235.5	120.1
P	C1P	H1P1	H1P2	117.8	240.1
C1	C1P	H1P1	H1P2	242.3	120.0
H1P1	C1P	C1	O1	306.5	210.1
H1P1	C1P	C1	N2	131.6	30.1
P	C1P	H1P2	C1	124.5	240.0
P	C1P	H1P2	H1P1	242.2	120.0
C1	C1P	H1P2	H1P1	117.7	240.0
H1P2	C1P	C1	O1	197.1	330.0
H1P2	C1P	C1	N2	22.1	150.0
O1	C1	C1P	H1P1	306.5	210.1
O1	C1	C1P	H1P2	197.1	330.0
C1P	C1	O1	N2	185.1	180.1
O1	C1	N2	C2	6.3	0.0
O1	C1	N2	HN2	186.3	180.1
N2	C1	C1P	H1P1	131.6	30.1
N2	C1	C1P	H1P2	22.1	150.0
C1P	C1	N2	O1	175.1	179.9
C2	N2	C1	HN2	180.0	180.0
C1	N2	C2	C4	293.9	270.1
C1	N2	C2	C3	167.8	149.9
C1	N2	C2	H2	47.9	30.0
C1	N2	C2	HN2	180.0	180.0
C4	C2	N2	C3	126.1	120.1
C4	C2	N2	H2	246.0	240.1
N2	C2	C4	O2	353.2	150.0
N2	C2	C4	O3	173.5	329.9
C3	C2	N2	H2	119.9	120.0
N2	C2	C3	C5	71.2	300.0
N2	C2	C3	H31	196.5	180.0
N2	C2	C3	H32	305.9	60.1
C1	N2	HN2	C2	180.0	180.0
HN2	N2	C2	C4	113.9	90.1
HN2	N2	C2	C3	347.8	329.9
HN2	N2	C2	H2	227.9	210.0
C4	C2	N2	HN2	113.9	90.1
N2	C2	C4	C3	233.3	239.9
N2	C2	C4	H2	113.3	119.9
C3	C2	C4	H2	240.0	240.0
C4	C2	C3	C5	300.7	180.0
C4	C2	C3	H31	66.0	59.9
C4	C2	C3	H32	175.4	300.0
O2	C4	C2	O3	179.8	180.1
C2	C4	O3	HO3	180.0	180.0
C3	C2	N2	HN2	347.8	329.9
N2	C2	C3	C4	130.5	120.1
N2	C2	C3	H2	245.7	240.1
C4	C2	C3	H2	115.2	120.0
C3	C2	C4	O2	120.0	270.1
C3	C2	C4	O3	300.2	90.0
C5	C3	C2	H31	234.7	120.0
C5	C3	C2	H32	125.3	240.0
C2	C3	C5	O4	189.4	360.0
C2	C3	C5	O5	9.1	180.0
H31	C3	C2	H32	250.6	120.0
H2	C2	N2	HN2	227.9	210.0
N2	C2	H2	C4	236.9	240.1
N2	C2	H2	C3	118.8	120.0
C4	C2	H2	C3	241.8	239.9
H2	C2	C4	O2	240.0	30.1
H2	C2	C4	O3	60.2	210.0
H2	C2	C3	C5	185.6	60.0
H2	C2	C3	H31	310.8	300.0
H2	C2	C3	H32	60.3	180.0
O2	C4	C2	C3	120.0	270.1
O2	C4	C2	H2	240.0	30.1
C2	C4	O2	O3	180.2	179.9
O2	C4	O3	HO3	0.2	359.9
O3	C4	C2	C3	300.2	90.0
O3	C4	C2	H2	60.2	210.0
C2	C4	O3	O2	179.8	180.1
C5	C3	C2	H2	185.6	60.0
C2	C3	C5	H31	125.3	239.9
C2	C3	C5	H32	234.7	120.0
H31	C3	C5	H32	109.4	240.1
O4	C5	C3	O5	180.3	180.0
C3	C5	O5	HO5	180.0	180.0
H31	C3	C2	H2	310.8	300.0
C2	C3	H31	C5	231.3	120.1
C2	C3	H31	H32	115.7	240.0
C5	C3	H31	H32	244.3	120.0
H31	C3	C5	O4	64.1	120.1
H31	C3	C5	O5	243.8	300.0
H32	C3	C2	H2	60.3	180.0
C2	C3	H32	C5	128.7	239.9
C2	C3	H32	H31	244.3	120.0
C5	C3	H32	H31	115.7	240.1
H32	C3	C5	O4	314.7	240.0
H32	C3	C5	O5	134.4	59.9
O4	C5	C3	H31	64.1	120.1
O4	C5	C3	H32	314.7	240.0
C3	C5	O4	O5	179.7	180.0
O4	C5	O5	HO5	359.7	359.9
O5	C5	C3	H31	243.8	300.0
O5	C5	C3	H32	134.4	59.9
C3	C5	O5	O4	180.3	180.0