PDB Chemical Component PAH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PAH

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.487	1.506
C1	P	1.762	1.823
C1	H11	1.116	1.089
C1	H12	1.116	1.090
C2	N3	1.322	1.346
C2	O2	1.288	1.213
N3	O3	1.362	1.416
N3	HN3	1.020	0.970
O3	HO3	0.950	0.967
O1P	P	1.520	1.480
O2P	P	1.562	1.609
O2P	HOP2	0.950	0.968
O3P	P	1.559	1.609
O3P	HOP3	0.950	0.967

Bond Angles for PAH

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	P	112.7	109.5
C2	C1	H11	111.1	109.5
C2	C1	H12	111.1	109.5
C1	C2	N3	118.8	120.0
C1	C2	O2	119.2	119.9
P	C1	H11	111.0	109.4
P	C1	H12	111.0	109.4
C1	P	O1P	111.9	109.4
C1	P	O2P	110.7	109.5
C1	P	O3P	109.2	109.5
H11	C1	H12	99.3	109.5
N3	C2	O2	122.0	120.0
C2	N3	O3	118.5	120.1
C2	N3	HN3	119.3	119.9
O3	N3	HN3	122.2	120.0
N3	O3	HO3	118.5	106.8
O1P	P	O2P	107.5	109.5
O1P	P	O3P	108.0	109.4
P	O2P	HOP2	110.7	106.8
O2P	P	O3P	109.5	109.5
P	O3P	HOP3	109.2	106.8

Torsion Angles for PAH

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
P	C1	C2	H11	234.8	240.0
P	C1	C2	H12	125.3	120.0
C2	C1	P	O1P	87.8	60.0
C2	C1	P	O2P	327.9	180.0
C2	C1	P	O3P	207.3	300.0
H11	C1	C2	H12	250.5	239.9
N3	C2	C1	O2	181.2	179.9
C1	C2	N3	O3	205.2	180.1
C1	C2	N3	HN3	25.2	0.0
C2	C1	P	H11	125.3	120.0
C2	C1	P	H12	234.7	240.0
P	C1	C2	N3	259.9	270.0
P	C1	C2	O2	78.8	90.0
H11	C1	P	H12	109.4	119.9
O1P	P	C1	O2P	119.9	240.0
O1P	P	C1	O3P	240.5	119.9
C1	P	O2P	HOP2	180.0	180.0
O2P	P	C1	O3P	120.6	240.0
C1	P	O3P	HOP3	180.0	299.9
C2	C1	H11	P	233.8	240.0
C2	C1	H11	H12	116.9	120.1
H11	C1	C2	N3	25.2	30.0
H11	C1	C2	O2	204.0	210.0
P	C1	H11	H12	243.1	240.1
H11	C1	P	O1P	322.5	300.0
H11	C1	P	O2P	202.6	60.0
H11	C1	P	O3P	82.0	180.0
C2	C1	H12	P	126.2	120.0
C2	C1	H12	H11	243.1	239.9
H12	C1	C2	N3	134.7	150.0
H12	C1	C2	O2	313.5	330.1
P	C1	H12	H11	116.8	119.9
H12	C1	P	O1P	213.1	180.0
H12	C1	P	O2P	93.2	300.0
H12	C1	P	O3P	332.5	60.1
N3	C2	C1	P	259.9	270.0
N3	C2	C1	H11	25.2	30.0
N3	C2	C1	H12	134.7	150.0
C1	C2	N3	O2	178.8	180.1
O3	N3	C2	HN3	180.0	180.1
C2	N3	O3	HO3	180.0	180.0
O2	C2	C1	P	78.8	90.0
O2	C2	C1	H11	204.0	210.0
O2	C2	C1	H12	313.5	330.1
C1	C2	O2	N3	181.2	179.9
O2	C2	N3	O3	26.4	0.0
O2	C2	N3	HN3	206.4	179.9
O3	N3	C2	O2	26.4	0.0
C2	N3	O3	HN3	180.0	179.9
HN3	N3	C2	O2	206.4	179.9
C2	N3	HN3	O3	180.0	180.1
HN3	N3	O3	HO3	360.0	0.0
HO3	O3	N3	HN3	360.0	0.0
O1P	P	C1	H11	322.5	300.0
O1P	P	C1	H12	213.1	180.0
C1	P	O1P	O2P	238.3	120.0
C1	P	O1P	O3P	120.2	240.1
O1P	P	O2P	HOP2	57.5	300.0
O2P	P	O1P	O3P	241.9	120.0
O1P	P	O3P	HOP3	301.9	180.0
O2P	P	C1	H11	202.6	60.0
O2P	P	C1	H12	93.2	300.0
C1	P	O2P	O1P	122.5	240.0
C1	P	O2P	O3P	239.6	120.0
O1P	P	O2P	O3P	117.1	240.0
O2P	P	O3P	HOP3	58.7	60.0
HOP2	O2P	P	O3P	300.4	60.0
O3P	P	C1	H11	82.0	180.0
O3P	P	C1	H12	332.5	60.1
C1	P	O3P	O1P	238.1	119.9
C1	P	O3P	O2P	121.3	240.0
O1P	P	O3P	O2P	243.2	120.0
O3P	P	O2P	HOP2	300.4	60.0