PDB Chemical Component PAC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for PAC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.507 |
1.506 |
C1 |
O1 |
1.285 |
1.208 |
C1 |
O2 |
1.237 |
1.342 |
C2 |
C1' |
1.507 |
1.507 |
C2 |
H21 |
1.115 |
1.089 |
C2 |
H22 |
1.114 |
1.090 |
C1' |
C2' |
1.390 |
1.381 |
C1' |
C6' |
1.376 |
1.382 |
C2' |
C3' |
1.371 |
1.382 |
C2' |
H2' |
1.102 |
1.079 |
C3' |
C4' |
1.367 |
1.382 |
C3' |
H3' |
1.104 |
1.080 |
C4' |
C5' |
1.381 |
1.381 |
C4' |
H4' |
1.104 |
1.081 |
C5' |
C6' |
1.372 |
1.383 |
C5' |
H5' |
1.103 |
1.080 |
C6' |
H6' |
1.102 |
1.080 |
O2 |
HO2 |
0.949 |
0.966 |
Bond Angles for PAC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
109.2 |
120.0 |
C2 |
C1 |
O2 |
124.3 |
120.1 |
C1 |
C2 |
C1' |
108.7 |
109.5 |
C1 |
C2 |
H21 |
112.5 |
109.5 |
C1 |
C2 |
H22 |
112.5 |
109.4 |
O1 |
C1 |
O2 |
126.4 |
119.9 |
C1 |
O2 |
HO2 |
124.3 |
120.1 |
C1' |
C2 |
H21 |
112.5 |
109.5 |
C1' |
C2 |
H22 |
112.5 |
109.5 |
C2 |
C1' |
C2' |
124.0 |
120.0 |
C2 |
C1' |
C6' |
113.5 |
119.9 |
H21 |
C2 |
H22 |
98.0 |
109.5 |
C2' |
C1' |
C6' |
122.5 |
120.1 |
C1' |
C2' |
C3' |
121.6 |
120.0 |
C1' |
C2' |
H2' |
120.0 |
120.0 |
C1' |
C6' |
C5' |
116.9 |
119.9 |
C1' |
C6' |
H6' |
121.8 |
120.0 |
C3' |
C2' |
H2' |
118.5 |
120.0 |
C2' |
C3' |
C4' |
114.4 |
120.0 |
C2' |
C3' |
H3' |
123.0 |
120.0 |
C4' |
C3' |
H3' |
122.7 |
120.0 |
C3' |
C4' |
C5' |
125.8 |
120.0 |
C3' |
C4' |
H4' |
116.5 |
120.0 |
C5' |
C4' |
H4' |
117.7 |
120.0 |
C4' |
C5' |
C6' |
119.0 |
120.0 |
C4' |
C5' |
H5' |
120.8 |
120.0 |
C6' |
C5' |
H5' |
120.2 |
120.0 |
C5' |
C6' |
H6' |
121.4 |
120.0 |
Torsion Angles for PAC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O2 |
182.9 |
179.9 |
C2 |
C1 |
O2 |
HO2 |
180.0 |
180.1 |
C1' |
C2 |
C1 |
H21 |
234.7 |
240.0 |
C1' |
C2 |
C1 |
H22 |
125.2 |
120.0 |
C1 |
C2 |
C1' |
C2' |
101.0 |
90.0 |
C1 |
C2 |
C1' |
C6' |
282.7 |
269.8 |
H21 |
C2 |
C1 |
H22 |
250.5 |
240.0 |
C2 |
C1 |
O1 |
O2 |
177.0 |
180.1 |
O1 |
C1 |
C2 |
C1' |
133.5 |
360.0 |
O1 |
C1 |
C2 |
H21 |
258.7 |
120.0 |
O1 |
C1 |
C2 |
H22 |
8.2 |
240.0 |
O1 |
C1 |
O2 |
HO2 |
356.5 |
0.2 |
C2 |
C1 |
O2 |
O1 |
183.5 |
179.9 |
O2 |
C1 |
C2 |
C1' |
310.5 |
180.1 |
O2 |
C1 |
C2 |
H21 |
75.8 |
300.1 |
O2 |
C1 |
C2 |
H22 |
185.3 |
60.1 |
C1' |
C2 |
C1 |
O1 |
133.5 |
360.0 |
C1' |
C2 |
C1 |
O2 |
310.5 |
180.1 |
C1 |
C2 |
C1' |
H21 |
125.3 |
120.0 |
C1 |
C2 |
C1' |
H22 |
234.8 |
240.1 |
H21 |
C2 |
C1' |
H22 |
109.5 |
120.0 |
C2' |
C1' |
C2 |
C6' |
178.3 |
180.3 |
C2 |
C1' |
C2' |
C3' |
181.9 |
180.0 |
C2 |
C1' |
C2' |
H2' |
1.9 |
360.0 |
C2 |
C1' |
C6' |
C5' |
178.6 |
179.8 |
C2 |
C1' |
C6' |
H6' |
358.6 |
0.2 |
H21 |
C2 |
C1 |
O1 |
258.7 |
120.0 |
H21 |
C2 |
C1 |
O2 |
75.8 |
300.1 |
C1 |
C2 |
H21 |
C1' |
236.8 |
240.0 |
C1 |
C2 |
H21 |
H22 |
118.4 |
119.9 |
C1' |
C2 |
H21 |
H22 |
241.6 |
240.0 |
H21 |
C2 |
C1' |
C2' |
335.7 |
330.0 |
H21 |
C2 |
C1' |
C6' |
157.4 |
149.7 |
H22 |
C2 |
C1 |
O1 |
8.2 |
240.0 |
H22 |
C2 |
C1 |
O2 |
185.3 |
60.1 |
C1 |
C2 |
H22 |
C1' |
123.1 |
120.0 |
C1 |
C2 |
H22 |
H21 |
241.5 |
240.0 |
C1' |
C2 |
H22 |
H21 |
118.4 |
120.0 |
H22 |
C2 |
C1' |
C2' |
226.2 |
210.0 |
H22 |
C2 |
C1' |
C6' |
48.0 |
29.7 |
C2' |
C1' |
C2 |
H21 |
335.7 |
330.0 |
C2' |
C1' |
C2 |
H22 |
226.2 |
210.0 |
C2 |
C1' |
C2' |
C6' |
181.9 |
179.7 |
C2' |
C1' |
C6' |
C5' |
0.3 |
359.6 |
C2' |
C1' |
C6' |
H6' |
180.3 |
180.0 |
C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
C1' |
C2' |
C3' |
C4' |
359.7 |
0.0 |
C1' |
C2' |
C3' |
H3' |
179.7 |
180.0 |
C6' |
C1' |
C2 |
H21 |
157.4 |
149.7 |
C6' |
C1' |
C2 |
H22 |
48.0 |
29.7 |
C2 |
C1' |
C6' |
C2' |
178.3 |
180.3 |
C6' |
C1' |
C2' |
C3' |
360.0 |
0.2 |
C6' |
C1' |
C2' |
H2' |
180.0 |
180.2 |
C4' |
C5' |
C6' |
C1' |
359.7 |
0.4 |
C1' |
C6' |
C5' |
H5' |
179.6 |
180.3 |
C5' |
C6' |
C1' |
H6' |
180.0 |
179.6 |
C3' |
C2' |
C1' |
C6' |
360.0 |
0.2 |
C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
C4' |
C3' |
C2' |
H3' |
180.0 |
180.0 |
C2' |
C3' |
C4' |
C5' |
0.3 |
359.9 |
C2' |
C3' |
C4' |
H4' |
180.3 |
179.9 |
H2' |
C2' |
C1' |
C6' |
180.0 |
180.2 |
C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
H2' |
C2' |
C3' |
C4' |
179.7 |
180.0 |
H2' |
C2' |
C3' |
H3' |
359.7 |
360.0 |
C4' |
C3' |
C2' |
H2' |
179.7 |
180.0 |
C2' |
C3' |
C4' |
H3' |
180.0 |
180.0 |
C5' |
C4' |
C3' |
H4' |
180.0 |
180.0 |
C3' |
C4' |
C5' |
C6' |
0.0 |
359.9 |
C3' |
C4' |
C5' |
H5' |
180.0 |
179.9 |
H3' |
C3' |
C2' |
H2' |
359.7 |
360.0 |
C2' |
C3' |
H3' |
C4' |
180.0 |
180.0 |
H3' |
C3' |
C4' |
C5' |
180.3 |
180.0 |
H3' |
C3' |
C4' |
H4' |
0.3 |
360.0 |
C1' |
C6' |
C5' |
C4' |
359.7 |
0.4 |
C5' |
C4' |
C3' |
H3' |
180.3 |
180.0 |
C3' |
C4' |
C5' |
H4' |
180.0 |
180.0 |
C6' |
C5' |
C4' |
H5' |
180.0 |
179.9 |
C4' |
C5' |
C6' |
H6' |
179.7 |
180.0 |
H4' |
C4' |
C3' |
H3' |
0.3 |
360.0 |
C3' |
C4' |
H4' |
C5' |
180.0 |
180.0 |
H4' |
C4' |
C5' |
C6' |
180.0 |
179.9 |
H4' |
C4' |
C5' |
H5' |
0.0 |
360.0 |
C1' |
C6' |
C5' |
H6' |
180.0 |
180.4 |
C6' |
C5' |
C4' |
H4' |
180.0 |
179.9 |
C4' |
C5' |
C6' |
H5' |
180.0 |
180.1 |
H5' |
C5' |
C4' |
H4' |
0.0 |
360.0 |
C4' |
C5' |
H5' |
C6' |
180.0 |
179.9 |
H5' |
C5' |
C6' |
H6' |
359.7 |
359.9 |
C1' |
C6' |
H6' |
C5' |
180.0 |
179.6 |
H6' |
C6' |
C5' |
H5' |
359.7 |
359.9 |