PDB Chemical Component PA5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for PA5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1A	C1	1.242	1.207
C1	O1	1.458	1.342
C1	C2	1.588	1.507
O1	HO1	0.950	0.967
C2	O2	1.433	1.429
C2	C3	1.589	1.530
C2	HC2	1.114	1.089
O2	HO2	0.949	0.967
C3	O3	1.436	1.428
C3	C4	1.554	1.530
C3	HC3	1.115	1.089
O3	HO3	0.950	0.967
C4	O4	1.486	1.428
C4	C5	1.437	1.529
C4	HC4	1.116	1.089
O4	HO4	0.951	0.966
C5	O5	1.476	1.429
C5	H51	1.115	1.089
C5	H52	1.114	1.089
O5	P	1.640	1.610
P	O1P	1.527	1.479
P	O2P	1.544	1.609
P	O3P	1.545	1.609
O2P	HOP2	0.950	0.967
O3P	HOP3	0.950	0.966

Bond Angles for PA5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1A	C1	O1	114.3	120.0
O1A	C1	C2	110.0	120.0
O1	C1	C2	112.0	120.0
C1	O1	HO1	114.3	120.0
C1	C2	O2	107.5	109.4
C1	C2	C3	107.6	109.5
C1	C2	HC2	113.5	109.5
O2	C2	C3	113.6	109.4
O2	C2	HC2	107.4	109.5
C2	O2	HO2	107.5	106.8
C3	C2	HC2	107.4	109.5
C2	C3	O3	116.2	109.5
C2	C3	C4	101.7	109.5
C2	C3	HC3	114.0	109.5
O3	C3	C4	118.2	109.5
O3	C3	HC3	95.7	109.5
C3	O3	HO3	116.2	106.8
C4	C3	HC3	111.7	109.4
C3	C4	O4	112.2	109.5
C3	C4	C5	111.1	109.5
C3	C4	HC4	104.8	109.4
O4	C4	C5	103.5	109.5
O4	C4	HC4	112.2	109.5
C4	O4	HO4	112.1	106.8
C5	C4	HC4	113.3	109.5
C4	C5	O5	113.2	109.5
C4	C5	H51	110.8	109.5
C4	C5	H52	110.9	109.5
O5	C5	H51	110.8	109.5
O5	C5	H52	110.8	109.4
C5	O5	P	113.4	106.8
H51	C5	H52	99.5	109.5
O5	P	O1P	112.9	109.4
O5	P	O2P	108.0	109.5
O5	P	O3P	112.3	109.5
O1P	P	O2P	110.1	109.4
O1P	P	O3P	106.2	109.5
O2P	P	O3P	107.2	109.5
P	O2P	HOP2	108.0	106.8
P	O3P	HOP3	112.3	106.8

Torsion Angles for PA5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	O1A	C2	127.0	180.0
O1A	C1	O1	HO1	180.0	0.0
O1A	C1	C2	O2	125.7	0.0
O1A	C1	C2	C3	248.4	120.0
O1A	C1	C2	HC2	7.0	240.0
O1A	C1	O1	C2	234.1	180.0
O1	C1	C2	O2	357.4	180.1
O1	C1	C2	C3	120.2	300.0
O1	C1	C2	HC2	238.8	60.1
O1A	C1	C2	O1	128.2	180.0
C2	C1	O1	HO1	305.9	180.0
O2	C2	C1	C3	237.2	240.0
O2	C2	C1	HC2	118.6	120.0
C1	C2	O2	HO2	180.0	60.0
C3	C2	C1	HC2	241.4	240.0
C1	C2	C3	O3	173.7	300.0
C1	C2	C3	C4	43.8	180.0
C1	C2	C3	HC3	283.5	60.1
HO1	O1	C1	C2	305.9	180.0
C1	C2	O2	C3	118.9	120.0
C1	C2	O2	HC2	237.6	240.0
C3	C2	O2	HC2	118.6	120.0
O2	C2	C3	O3	292.6	60.0
O2	C2	C3	C4	162.7	300.0
O2	C2	C3	HC3	42.4	180.0
C1	C2	C3	O2	241.1	240.0
C1	C2	C3	HC2	122.4	120.0
O2	C2	C3	HC2	241.4	240.0
C3	C2	O2	HO2	61.1	300.0
O3	C3	C2	C4	129.8	120.0
O3	C3	C2	HC3	250.2	240.0
C2	C3	O3	HO3	180.0	300.0
C4	C3	C2	HC3	120.3	119.9
C2	C3	C4	O4	167.7	300.0
C2	C3	C4	C5	52.5	180.0
C2	C3	C4	HC4	289.8	60.0
C1	C2	HC2	O2	118.7	120.0
C1	C2	HC2	C3	241.3	239.9
O2	C2	HC2	C3	122.6	120.0
HC2	C2	O2	HO2	302.4	180.0
HC2	C2	C3	O3	51.2	180.0
HC2	C2	C3	C4	281.4	60.0
HC2	C2	C3	HC3	161.0	300.0
HO2	O2	C2	C3	61.1	300.0
HO2	O2	C2	HC2	302.4	180.0
O3	C3	C2	HC2	51.2	180.0
C2	C3	O3	C4	238.6	240.0
C2	C3	O3	HC3	120.3	120.0
C4	C3	O3	HC3	241.7	240.0
O3	C3	C4	O4	39.2	180.0
O3	C3	C4	C5	283.9	60.0
O3	C3	C4	HC4	161.2	300.0
C4	C3	C2	HC2	281.4	60.0
C2	C3	C4	O3	128.5	120.0
C2	C3	C4	HC3	238.1	240.0
O3	C3	C4	HC3	109.5	120.0
C4	C3	O3	HO3	301.4	60.1
O4	C4	C3	C5	115.3	120.0
O4	C4	C3	HC4	238.0	240.0
C3	C4	O4	HO4	180.0	299.9
C5	C4	C3	HC4	122.7	120.0
C3	C4	C5	O5	180.5	180.0
C3	C4	C5	H51	305.8	300.0
C3	C4	C5	H52	55.3	60.1
HC3	C3	C2	HC2	161.0	300.0
C2	C3	HC3	O3	238.0	240.0
C2	C3	HC3	C4	114.6	120.0
O3	C3	HC3	C4	236.6	240.0
HC3	C3	O3	HO3	59.8	180.0
HC3	C3	C4	O4	289.7	60.0
HC3	C3	C4	C5	174.4	300.0
HC3	C3	C4	HC4	51.7	180.0
HO3	O3	C3	C4	301.4	60.1
HO3	O3	C3	HC3	59.8	180.0
O4	C4	C3	HC3	289.7	60.0
C3	C4	O4	C5	240.2	240.0
C3	C4	O4	HC4	117.7	120.0
C5	C4	O4	HC4	237.5	240.0
O4	C4	C5	O5	60.0	60.0
O4	C4	C5	H51	185.2	180.0
O4	C4	C5	H52	294.8	300.0
C5	C4	C3	HC3	174.4	300.0
C3	C4	C5	O4	120.5	120.0
C3	C4	C5	HC4	242.3	240.1
O4	C4	C5	HC4	121.8	120.0
C5	C4	O4	HO4	299.8	60.0
O5	C5	C4	H51	234.8	240.0
O5	C5	C4	H52	125.2	120.0
C4	C5	O5	P	157.5	180.0
H51	C5	C4	H52	250.5	240.0
HC4	C4	C3	HC3	51.7	180.0
C3	C4	HC4	O4	238.0	240.0
C3	C4	HC4	C5	121.3	120.0
O4	C4	HC4	C5	243.3	240.0
HC4	C4	O4	HO4	62.3	180.0
HC4	C4	C5	O5	298.2	300.0
HC4	C4	C5	H51	63.4	60.0
HC4	C4	C5	H52	173.0	180.0
HO4	O4	C4	C5	299.8	60.0
HO4	O4	C4	HC4	62.3	180.0
O5	C5	C4	HC4	298.2	300.0
C4	C5	O5	H51	125.2	120.0
C4	C5	O5	H52	234.7	240.0
H51	C5	O5	H52	109.5	120.0
C5	O5	P	O1P	162.9	60.0
C5	O5	P	O2P	284.8	180.0
C5	O5	P	O3P	42.7	300.0
H51	C5	C4	HC4	63.4	60.0
C4	C5	H51	O5	233.4	240.0
C4	C5	H51	H52	116.7	120.0
O5	C5	H51	H52	243.3	240.0
H51	C5	O5	P	32.2	60.0
H52	C5	C4	HC4	173.0	180.0
C4	C5	H52	O5	126.6	120.0
C4	C5	H52	H51	243.3	240.0
O5	C5	H52	H51	116.7	120.0
H52	C5	O5	P	282.7	300.0
P	O5	C5	H51	32.2	60.0
P	O5	C5	H52	282.7	300.0
O1P	P	O5	O2P	238.1	240.0
O1P	P	O5	O3P	120.1	120.0
O2P	P	O5	O3P	242.1	240.0
O5	P	O2P	HOP2	180.1	180.0
O5	P	O3P	HOP3	180.0	300.0
O5	P	O1P	O2P	120.7	120.0
O5	P	O1P	O3P	236.4	240.0
O2P	P	O1P	O3P	115.7	120.0
O1P	P	O2P	HOP2	303.7	299.9
O1P	P	O3P	HOP3	56.0	180.0
O5	P	O2P	O1P	236.3	240.0
O5	P	O2P	O3P	121.2	120.0
O1P	P	O2P	O3P	244.9	240.0
O2P	P	O3P	HOP3	298.4	60.0
O5	P	O3P	O1P	123.9	120.0
O5	P	O3P	O2P	241.6	240.0
O1P	P	O3P	O2P	117.6	120.0
O3P	P	O2P	HOP2	58.8	60.0
HOP2	O2P	P	O3P	58.8	60.0