PDB Chemical Component P7G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P7G
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C73 |
C72 |
1.507 |
1.529 |
| O6 |
C6 |
1.242 |
1.224 |
| C72 |
C71 |
1.514 |
1.530 |
| C6 |
N1 |
1.330 |
1.341 |
| C6 |
C5 |
1.463 |
1.413 |
| C71 |
N7 |
1.469 |
1.466 |
| N1 |
C2 |
1.335 |
1.315 |
| C5 |
N7 |
1.327 |
1.413 |
| C5 |
C4 |
1.458 |
1.363 |
| N7 |
C8 |
1.435 |
1.470 |
| C2 |
N2 |
1.346 |
1.372 |
| C2 |
N3 |
1.345 |
1.359 |
| C8 |
N9 |
1.460 |
1.468 |
| C4 |
N3 |
1.336 |
1.376 |
| C4 |
N9 |
1.322 |
1.381 |
| OP1 |
P |
1.495 |
1.480 |
| N9 |
C1' |
1.482 |
1.464 |
| P |
O5' |
1.584 |
1.610 |
| P |
OP2 |
1.493 |
1.610 |
| O5' |
C5' |
1.417 |
1.429 |
| C1' |
C2' |
1.525 |
1.550 |
| C1' |
O4' |
1.411 |
1.444 |
| C2' |
C3' |
1.520 |
1.548 |
| C2' |
O2' |
1.416 |
1.429 |
| C3' |
O3' |
1.409 |
1.428 |
| C3' |
C4' |
1.513 |
1.541 |
| O4' |
C4' |
1.450 |
1.437 |
| C5' |
C4' |
1.506 |
1.530 |
| P |
OP3 |
1.600 |
1.610 |
| C1' |
H1 |
1.100 |
1.090 |
| C2' |
H2 |
1.100 |
1.089 |
| C3' |
H3 |
1.100 |
1.091 |
| C4' |
H4 |
1.100 |
1.090 |
| C5' |
H5 |
1.100 |
1.089 |
| C5' |
H6 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.090 |
| N2 |
H8 |
1.000 |
0.970 |
| N2 |
H9 |
1.000 |
0.970 |
| N3 |
H10 |
1.000 |
0.970 |
| O2' |
H11 |
0.950 |
0.968 |
| O3' |
H12 |
0.950 |
0.967 |
| OP2 |
H13 |
0.950 |
0.967 |
| C71 |
H14 |
1.100 |
1.090 |
| C71 |
H15 |
1.100 |
1.090 |
| C72 |
H16 |
1.100 |
1.090 |
| C72 |
H17 |
1.100 |
1.090 |
| C73 |
H18 |
1.100 |
1.091 |
| C73 |
H19 |
1.100 |
1.090 |
| C73 |
H20 |
1.100 |
1.090 |
| OP3 |
H21 |
0.950 |
0.967 |
| C8 |
H22 |
1.100 |
1.091 |
Bond Angles for P7G
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C73 |
C72 |
H16 |
109.3 |
109.5 |
| C73 |
C72 |
H17 |
109.3 |
109.5 |
| C72 |
C71 |
H14 |
108.3 |
109.5 |
| C72 |
C71 |
H15 |
108.3 |
109.5 |
| C6 |
C5 |
N7 |
133.9 |
131.0 |
| N1 |
C2 |
N2 |
118.5 |
119.3 |
| N1 |
C2 |
N3 |
123.7 |
121.3 |
| C5 |
N7 |
C8 |
114.7 |
106.5 |
| C5 |
C4 |
N3 |
118.1 |
118.8 |
| C5 |
C4 |
N9 |
104.7 |
110.7 |
| N7 |
C8 |
N9 |
97.9 |
105.2 |
| N7 |
C8 |
H7 |
112.3 |
110.3 |
| N7 |
C8 |
H22 |
112.3 |
110.4 |
| N2 |
C2 |
N3 |
117.8 |
119.3 |
| C2 |
N2 |
H8 |
120.0 |
120.0 |
| C2 |
N2 |
H9 |
120.0 |
120.0 |
| C2 |
N3 |
C4 |
120.2 |
120.3 |
| C2 |
N3 |
H10 |
119.9 |
119.8 |
| C4 |
N9 |
C8 |
115.6 |
107.6 |
| N9 |
C8 |
H7 |
112.3 |
110.3 |
| N9 |
C8 |
H22 |
112.3 |
110.3 |
| N3 |
C4 |
N9 |
137.1 |
130.5 |
| C4 |
N3 |
H10 |
119.9 |
119.8 |
| OP1 |
P |
OP2 |
120.7 |
109.5 |
| OP1 |
P |
OP3 |
107.3 |
109.5 |
| N9 |
C1' |
O4' |
110.5 |
110.7 |
| N9 |
C1' |
H1 |
108.6 |
110.7 |
| P |
OP2 |
H13 |
109.5 |
114.0 |
| O5' |
C5' |
H5 |
109.2 |
109.5 |
| O5' |
C5' |
H6 |
109.2 |
109.4 |
| C2' |
C1' |
O4' |
107.3 |
103.4 |
| C1' |
C2' |
C3' |
101.0 |
102.1 |
| C1' |
C2' |
O2' |
108.1 |
110.9 |
| C2' |
C1' |
H1 |
108.0 |
110.6 |
| C1' |
C2' |
H2 |
111.6 |
110.9 |
| C1' |
O4' |
C4' |
109.7 |
107.0 |
| O4' |
C1' |
H1 |
109.5 |
110.6 |
| C3' |
C2' |
O2' |
110.6 |
110.9 |
| C2' |
C3' |
O3' |
114.7 |
110.5 |
| C2' |
C3' |
C4' |
101.9 |
104.2 |
| C3' |
C2' |
H2 |
111.7 |
110.9 |
| C2' |
C3' |
H3 |
107.8 |
110.5 |
| O2' |
C2' |
H2 |
113.3 |
110.8 |
| C2' |
O2' |
H11 |
109.5 |
114.0 |
| C4' |
C3' |
O3' |
114.6 |
110.5 |
| O3' |
C3' |
H3 |
109.3 |
110.5 |
| C3' |
O3' |
H12 |
109.5 |
114.0 |
| C4' |
C3' |
H3 |
108.0 |
110.6 |
| C3' |
C4' |
H4 |
109.3 |
109.9 |
| O4' |
C4' |
H4 |
110.1 |
109.9 |
| C5' |
C4' |
H4 |
109.3 |
109.9 |
| P |
OP3 |
H21 |
109.5 |
114.0 |
| H5 |
C5' |
H6 |
109.5 |
109.5 |
| H7 |
C8 |
H22 |
109.5 |
110.3 |
| H8 |
N2 |
H9 |
120.0 |
120.0 |
| H14 |
C71 |
H15 |
109.4 |
109.5 |
| H16 |
C72 |
H17 |
109.5 |
109.4 |
| H18 |
C73 |
H19 |
109.5 |
109.5 |
| H18 |
C73 |
H20 |
109.5 |
109.5 |
| H19 |
C73 |
H20 |
109.5 |
109.5 |
Torsion Angles for P7G
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C73 |
C72 |
C71 |
H14 |
321.8 |
60.1 |
| C73 |
C72 |
C71 |
H15 |
80.3 |
300.0 |
| H16 |
C72 |
C73 |
H17 |
240.2 |
120.0 |
| H14 |
C71 |
C72 |
H15 |
241.4 |
120.0 |
| N1 |
C6 |
C5 |
N7 |
181.0 |
179.9 |
| C6 |
N1 |
C2 |
N2 |
180.1 |
179.9 |
| C6 |
N1 |
C2 |
N3 |
359.8 |
359.7 |
| C6 |
C5 |
N7 |
C8 |
178.8 |
180.3 |
| C6 |
C5 |
C4 |
N3 |
1.3 |
359.7 |
| C6 |
C5 |
C4 |
N9 |
180.3 |
179.8 |
| C71 |
N7 |
C8 |
H7 |
299.6 |
298.9 |
| C71 |
N7 |
C8 |
H22 |
63.5 |
61.0 |
| N2 |
C2 |
N1 |
N3 |
180.3 |
180.2 |
| N1 |
C2 |
N2 |
H8 |
0.0 |
179.7 |
| N1 |
C2 |
N2 |
H9 |
180.0 |
359.8 |
| N1 |
C2 |
N3 |
C4 |
0.3 |
0.2 |
| N1 |
C2 |
N3 |
H10 |
180.3 |
180.3 |
| N7 |
C5 |
C4 |
N3 |
179.7 |
180.0 |
| N7 |
C5 |
C4 |
N9 |
358.7 |
0.1 |
| C5 |
N7 |
C8 |
N9 |
0.0 |
360.0 |
| C5 |
N7 |
C8 |
H7 |
118.1 |
119.0 |
| C5 |
N7 |
C8 |
H22 |
241.9 |
241.1 |
| C2 |
N3 |
C4 |
C5 |
359.1 |
0.1 |
| C5 |
C4 |
N9 |
C8 |
1.4 |
359.9 |
| N3 |
C4 |
C5 |
N9 |
180.9 |
179.9 |
| C5 |
C4 |
N3 |
H10 |
179.2 |
180.0 |
| C4 |
N9 |
C8 |
N7 |
359.1 |
0.0 |
| N9 |
C8 |
N7 |
H7 |
242.0 |
241.0 |
| N9 |
C8 |
N7 |
H22 |
118.1 |
118.9 |
| H7 |
C8 |
N7 |
H22 |
236.1 |
237.9 |
| N1 |
C2 |
N2 |
N3 |
179.7 |
179.8 |
| N2 |
C2 |
N3 |
C4 |
180.0 |
180.0 |
| N2 |
C2 |
N3 |
H10 |
360.0 |
0.1 |
| H8 |
N2 |
C2 |
H9 |
180.0 |
179.9 |
| N1 |
C2 |
N3 |
N2 |
180.3 |
180.2 |
| C5 |
C4 |
N3 |
C2 |
359.1 |
0.1 |
| N3 |
C2 |
N2 |
H8 |
180.3 |
359.9 |
| N3 |
C2 |
N2 |
H9 |
0.3 |
180.0 |
| C2 |
N3 |
C4 |
N9 |
180.5 |
180.0 |
| C4 |
N3 |
C2 |
H10 |
180.0 |
179.9 |
| N7 |
C8 |
N9 |
H7 |
118.1 |
119.0 |
| N7 |
C8 |
N9 |
H22 |
241.9 |
241.0 |
| N3 |
C4 |
N9 |
C8 |
180.1 |
180.0 |
| C8 |
N9 |
C1' |
O4' |
17.8 |
229.1 |
| C8 |
N9 |
C1' |
H1 |
138.0 |
352.1 |
| H7 |
C8 |
N9 |
H22 |
123.9 |
122.0 |
| C5 |
C4 |
N3 |
N9 |
178.7 |
180.1 |
| C2 |
N3 |
C4 |
H10 |
180.0 |
180.1 |
| C5 |
C4 |
N9 |
N3 |
181.2 |
179.9 |
| N7 |
C8 |
N9 |
C4 |
359.1 |
0.0 |
| C4 |
N9 |
C8 |
H7 |
241.0 |
241.1 |
| C4 |
N9 |
C8 |
H22 |
117.2 |
119.1 |
| N9 |
C4 |
N3 |
H10 |
0.5 |
359.9 |
| C4 |
N9 |
C1' |
O4' |
199.2 |
49.0 |
| C4 |
N9 |
C1' |
H1 |
319.3 |
172.0 |
| OP1 |
P |
OP2 |
H13 |
0.0 |
180.0 |
| OP1 |
P |
OP3 |
H21 |
0.0 |
60.0 |
| C2' |
C1' |
N9 |
O4' |
239.8 |
246.0 |
| N9 |
C1' |
C2' |
O2' |
214.0 |
273.7 |
| C2' |
C1' |
N9 |
H1 |
119.7 |
123.0 |
| N9 |
C1' |
C2' |
H2 |
339.2 |
37.3 |
| N9 |
C1' |
O4' |
C4' |
235.8 |
201.5 |
| O4' |
C1' |
N9 |
H1 |
239.8 |
237.0 |
| P |
O5' |
C5' |
H5 |
277.6 |
60.0 |
| P |
O5' |
C5' |
H6 |
37.2 |
299.9 |
| OP1 |
P |
OP2 |
OP3 |
124.9 |
239.9 |
| O5' |
C5' |
C4' |
H4 |
202.8 |
306.0 |
| H5 |
C5' |
O5' |
H6 |
240.4 |
120.0 |
| N9 |
C1' |
C2' |
O4' |
122.0 |
118.5 |
| N9 |
C1' |
C2' |
H1 |
240.0 |
236.9 |
| C2' |
C1' |
O4' |
C4' |
359.2 |
319.9 |
| O4' |
C1' |
C2' |
H1 |
118.0 |
118.4 |
| C3' |
C2' |
C1' |
O2' |
243.9 |
241.8 |
| C1' |
C2' |
C3' |
O3' |
163.0 |
97.8 |
| C1' |
C2' |
C3' |
C4' |
38.6 |
339.1 |
| C3' |
C2' |
C1' |
H2 |
118.7 |
118.2 |
| C1' |
C2' |
C3' |
H3 |
285.0 |
220.3 |
| O2' |
C2' |
C1' |
H2 |
234.8 |
236.4 |
| C1' |
C2' |
O2' |
H11 |
180.0 |
180.0 |
| N9 |
C1' |
O4' |
H1 |
119.6 |
123.1 |
| O4' |
C1' |
C2' |
C3' |
335.9 |
37.0 |
| O4' |
C1' |
C2' |
O2' |
92.0 |
155.2 |
| C2' |
C1' |
O4' |
H1 |
242.9 |
241.6 |
| O4' |
C1' |
C2' |
H2 |
217.2 |
278.8 |
| C1' |
O4' |
C4' |
H4 |
269.4 |
267.1 |
| C3' |
C2' |
C1' |
O4' |
335.9 |
37.0 |
| C1' |
C2' |
C3' |
O2' |
114.2 |
118.2 |
| C3' |
C2' |
C1' |
H1 |
217.9 |
278.6 |
| C1' |
C2' |
C3' |
H2 |
241.3 |
241.8 |
| O2' |
C2' |
C3' |
H2 |
127.1 |
123.6 |
| C3' |
C2' |
O2' |
H11 |
289.6 |
292.7 |
| C4' |
C3' |
C2' |
O3' |
235.6 |
241.3 |
| O3' |
C3' |
C2' |
H3 |
238.0 |
237.4 |
| C2' |
C3' |
O3' |
H12 |
180.0 |
61.5 |
| C4' |
C3' |
C2' |
H3 |
113.5 |
118.8 |
| C2' |
C3' |
C4' |
H4 |
77.0 |
117.4 |
| O2' |
C2' |
C1' |
O4' |
92.0 |
155.2 |
| C1' |
C2' |
O2' |
C3' |
250.3 |
247.3 |
| O2' |
C2' |
C1' |
H1 |
334.0 |
36.8 |
| C1' |
C2' |
O2' |
H2 |
124.1 |
123.6 |
| O2' |
C2' |
C3' |
O3' |
48.8 |
339.6 |
| O2' |
C2' |
C3' |
C4' |
284.4 |
220.9 |
| C3' |
C2' |
O2' |
H2 |
233.8 |
236.4 |
| O2' |
C2' |
C3' |
H3 |
170.8 |
102.1 |
| O3' |
C3' |
C2' |
O2' |
48.8 |
339.6 |
| C2' |
C3' |
O3' |
C4' |
242.6 |
245.2 |
| O3' |
C3' |
C2' |
H2 |
281.7 |
216.0 |
| C2' |
C3' |
O3' |
H3 |
121.2 |
122.6 |
| C4' |
C3' |
O3' |
H3 |
238.6 |
237.3 |
| O3' |
C3' |
C4' |
H4 |
312.5 |
358.7 |
| C1' |
O4' |
C4' |
C3' |
25.7 |
26.5 |
| C4' |
C3' |
C2' |
O2' |
284.4 |
220.9 |
| C2' |
C3' |
C4' |
O3' |
124.5 |
118.7 |
| C4' |
C3' |
C2' |
H2 |
157.2 |
97.3 |
| C2' |
C3' |
C4' |
H3 |
246.6 |
241.3 |
| O3' |
C3' |
C4' |
H3 |
122.1 |
122.6 |
| C4' |
C3' |
O3' |
H12 |
297.4 |
176.2 |
| O4' |
C4' |
C3' |
H4 |
243.1 |
240.6 |
| C5' |
C4' |
C3' |
H4 |
124.2 |
121.0 |
| C4' |
O4' |
C1' |
H1 |
116.3 |
78.4 |
| O4' |
C4' |
C3' |
H3 |
73.5 |
116.7 |
| C3' |
C4' |
O4' |
H4 |
116.3 |
119.4 |
| C5' |
C4' |
O4' |
H4 |
240.1 |
238.9 |
| C1' |
O4' |
C4' |
C5' |
149.4 |
146.0 |
| C5' |
C4' |
C3' |
O3' |
76.7 |
119.7 |
| C5' |
C4' |
C3' |
H3 |
314.6 |
357.1 |
| C3' |
C4' |
C5' |
H4 |
235.9 |
239.0 |
| O4' |
C4' |
C5' |
H4 |
120.4 |
121.1 |
| OP1 |
P |
OP3 |
OP2 |
227.6 |
120.0 |
| OP3 |
P |
OP2 |
H13 |
235.1 |
300.0 |
| N9 |
C1' |
H1 |
O4' |
239.2 |
237.0 |
| C2' |
C1' |
H1 |
O4' |
116.6 |
114.0 |
| H1 |
C1' |
C2' |
C3' |
217.9 |
278.6 |
| H1 |
C1' |
C2' |
O2' |
334.0 |
36.8 |
| H1 |
C1' |
C2' |
H2 |
99.1 |
160.4 |
| H1 |
C1' |
O4' |
C4' |
116.3 |
78.4 |
| H2 |
C2' |
C1' |
O4' |
217.2 |
278.8 |
| C1' |
C2' |
H2 |
C3' |
112.2 |
112.8 |
| C1' |
C2' |
H2 |
O2' |
237.8 |
236.4 |
| H2 |
C2' |
C1' |
H1 |
99.1 |
160.4 |
| C3' |
C2' |
H2 |
O2' |
125.6 |
123.6 |
| H2 |
C2' |
C3' |
O3' |
281.7 |
216.0 |
| H2 |
C2' |
C3' |
C4' |
157.2 |
97.3 |
| H2 |
C2' |
C3' |
H3 |
43.7 |
338.6 |
| H2 |
C2' |
O2' |
H11 |
55.9 |
56.4 |
| H3 |
C3' |
C2' |
O2' |
170.8 |
102.1 |
| C2' |
C3' |
H3 |
O3' |
234.7 |
237.4 |
| C2' |
C3' |
H3 |
C4' |
109.4 |
114.8 |
| H3 |
C3' |
C2' |
H2 |
43.7 |
338.6 |
| C4' |
C3' |
H3 |
O3' |
125.3 |
122.6 |
| H3 |
C3' |
O3' |
H12 |
58.8 |
298.9 |
| H3 |
C3' |
C4' |
H4 |
190.4 |
236.1 |
| H4 |
C4' |
C3' |
O3' |
312.5 |
358.7 |
| H4 |
C4' |
C3' |
H3 |
190.4 |
236.1 |
| O5' |
C5' |
H5 |
H6 |
119.4 |
240.0 |
| H5 |
C5' |
C4' |
H4 |
82.6 |
66.0 |
| O5' |
C5' |
H6 |
H5 |
240.5 |
120.0 |
| H6 |
C5' |
C4' |
H4 |
323.0 |
186.1 |
| N7 |
C8 |
H7 |
N9 |
250.9 |
244.2 |
| N7 |
C8 |
H7 |
H22 |
125.4 |
122.2 |
| N9 |
C8 |
H7 |
H22 |
234.6 |
238.0 |
| H8 |
N2 |
C2 |
N3 |
180.3 |
359.9 |
| C2 |
N2 |
H8 |
H9 |
180.0 |
180.1 |
| H9 |
N2 |
C2 |
N3 |
0.3 |
180.0 |
| C2 |
N2 |
H9 |
H8 |
180.0 |
179.9 |
| C2 |
N3 |
H10 |
C4 |
180.0 |
179.9 |
| H10 |
N3 |
C4 |
N9 |
0.5 |
359.9 |
| H11 |
O2' |
C2' |
H2 |
55.9 |
56.4 |
| H12 |
O3' |
C3' |
H3 |
58.8 |
298.9 |
| C72 |
C71 |
H14 |
H15 |
117.8 |
240.0 |
| C72 |
C71 |
H15 |
H14 |
242.2 |
120.0 |
| C73 |
C72 |
H16 |
H17 |
119.7 |
239.9 |
| H16 |
C72 |
C71 |
H14 |
201.7 |
180.1 |
| H16 |
C72 |
C71 |
H15 |
320.2 |
60.0 |
| C73 |
C72 |
H17 |
H16 |
240.3 |
120.0 |
| H17 |
C72 |
C71 |
H14 |
81.9 |
300.0 |
| H17 |
C72 |
C71 |
H15 |
200.4 |
180.0 |
| H18 |
C73 |
C72 |
H16 |
300.1 |
180.0 |
| H18 |
C73 |
C72 |
H17 |
59.9 |
60.0 |
| H19 |
C73 |
H18 |
H20 |
120.0 |
120.0 |
| H19 |
C73 |
C72 |
H16 |
60.1 |
300.0 |
| H19 |
C73 |
C72 |
H17 |
179.9 |
180.0 |
| H18 |
C73 |
H19 |
H20 |
240.0 |
240.0 |
| H20 |
C73 |
C72 |
H16 |
180.1 |
60.0 |
| H20 |
C73 |
C72 |
H17 |
299.9 |
300.0 |
| H18 |
C73 |
H20 |
H19 |
120.0 |
120.0 |
| N7 |
C8 |
H22 |
N9 |
109.2 |
115.8 |
| N7 |
C8 |
H22 |
H7 |
234.6 |
237.8 |
| N9 |
C8 |
H22 |
H7 |
125.4 |
122.1 |