Atom Nomenclature for P77

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for P77

Atom Name (V3) Atom Name (V2)
S S
CL CL
C1 C1
N1 N1
C2 C2
N2 N2
C3 C3
N3 N3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
H2 H2
H3 H3
H6 H6
H8 H8
H9 H9
H10 H10
H11 H11
H13 H13
H13A H13A
H14 H14
H14A H14A
H15 H15
H15A H15A
H16 H16
H16A H16A
H17 H17
H17A H17A
H18 H18
H18A H18A
H19 H19
H19A H19A
H20 H20
H20A H20A
H20B H20B