PDB Chemical Component P6M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P6M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C14 |
C12 |
1.519 |
1.527 |
| C12 |
C11 |
1.521 |
1.524 |
| C12 |
S |
1.827 |
1.816 |
| C11 |
C10 |
1.546 |
1.515 |
| F1 |
C7 |
1.353 |
1.351 |
| S |
C13 |
1.751 |
1.763 |
| C7 |
C8 |
1.373 |
1.384 |
| C7 |
C6 |
1.387 |
1.385 |
| C8 |
C9 |
1.369 |
1.384 |
| C10 |
C6 |
1.526 |
1.520 |
| C10 |
C15 |
1.526 |
1.535 |
| C10 |
N1 |
1.473 |
1.442 |
| C6 |
C5 |
1.391 |
1.381 |
| C13 |
N1 |
1.262 |
1.279 |
| C13 |
N2 |
1.336 |
1.369 |
| C9 |
F |
1.353 |
1.351 |
| C9 |
C4 |
1.378 |
1.384 |
| C5 |
C4 |
1.391 |
1.382 |
| C4 |
C3 |
1.508 |
1.507 |
| F2 |
C16 |
1.328 |
1.399 |
| N |
C3 |
1.471 |
1.469 |
| N |
C1 |
1.486 |
1.469 |
| C |
C1 |
1.492 |
1.530 |
| C |
C2 |
1.503 |
1.530 |
| C1 |
C16 |
1.509 |
1.530 |
| C1 |
C2 |
1.492 |
1.529 |
| C16 |
F3 |
1.329 |
1.399 |
| C16 |
F4 |
1.328 |
1.399 |
| C8 |
H1 |
1.080 |
1.080 |
| C5 |
H2 |
1.079 |
1.080 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H4 |
1.100 |
1.090 |
| N |
H5 |
1.000 |
1.009 |
| C2 |
H7 |
1.101 |
1.090 |
| C2 |
H8 |
1.099 |
1.090 |
| C |
H9 |
1.100 |
1.090 |
| C |
H10 |
1.100 |
1.091 |
| C11 |
H11 |
1.100 |
1.101 |
| C11 |
H12 |
1.100 |
1.100 |
| C12 |
H13 |
1.100 |
1.100 |
| N2 |
H14 |
1.000 |
0.970 |
| N2 |
H15 |
1.000 |
0.970 |
| C15 |
H16 |
1.100 |
1.090 |
| C15 |
H17 |
1.100 |
1.090 |
| C15 |
H18 |
1.100 |
1.090 |
| C14 |
H19 |
1.100 |
1.091 |
| C14 |
H20 |
1.100 |
1.090 |
| C14 |
H21 |
1.100 |
1.089 |
Bond Angles for P6M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
C12 |
H13 |
110.3 |
108.6 |
| C12 |
C11 |
H11 |
108.6 |
108.9 |
| C12 |
C11 |
H12 |
108.6 |
108.9 |
| C12 |
S |
C13 |
100.0 |
97.9 |
| S |
C12 |
H13 |
106.8 |
108.5 |
| C11 |
C10 |
C15 |
110.4 |
109.4 |
| C11 |
C10 |
N1 |
108.5 |
117.0 |
| F1 |
C7 |
C8 |
117.8 |
120.0 |
| F1 |
C7 |
C6 |
118.5 |
120.0 |
| S |
C13 |
N1 |
129.3 |
121.5 |
| S |
C13 |
N2 |
111.9 |
118.7 |
| C6 |
C7 |
C8 |
123.7 |
119.9 |
| C7 |
C8 |
C9 |
117.1 |
120.0 |
| C7 |
C8 |
H1 |
121.4 |
120.0 |
| C7 |
C6 |
C5 |
116.3 |
120.0 |
| C8 |
C9 |
F |
118.8 |
120.0 |
| C8 |
C9 |
C4 |
123.4 |
120.0 |
| C9 |
C8 |
H1 |
121.5 |
120.0 |
| N1 |
C10 |
C15 |
108.4 |
108.8 |
| C10 |
C15 |
H16 |
109.5 |
109.5 |
| C10 |
C15 |
H17 |
109.4 |
109.5 |
| C10 |
C15 |
H18 |
109.4 |
109.5 |
| C10 |
N1 |
C13 |
125.6 |
129.5 |
| C6 |
C5 |
C4 |
122.5 |
120.1 |
| C6 |
C5 |
H2 |
118.8 |
120.0 |
| N1 |
C13 |
N2 |
118.8 |
119.8 |
| C13 |
N2 |
H14 |
120.0 |
120.0 |
| C13 |
N2 |
H15 |
120.0 |
120.0 |
| F |
C9 |
C4 |
117.8 |
120.0 |
| C9 |
C4 |
C3 |
121.7 |
120.0 |
| C5 |
C4 |
C3 |
121.2 |
120.0 |
| C4 |
C3 |
H3 |
108.5 |
109.5 |
| C4 |
C3 |
H4 |
108.5 |
109.5 |
| F2 |
C16 |
F3 |
106.9 |
109.5 |
| F2 |
C16 |
F4 |
106.8 |
109.5 |
| N |
C3 |
H3 |
108.5 |
109.4 |
| N |
C3 |
H4 |
108.5 |
109.5 |
| N |
C1 |
C16 |
114.5 |
115.5 |
| N |
C1 |
C2 |
115.7 |
117.5 |
| C1 |
N |
H5 |
107.7 |
111.0 |
| C |
C2 |
H7 |
120.0 |
117.5 |
| C |
C2 |
H8 |
120.0 |
117.5 |
| C16 |
C1 |
C2 |
119.9 |
117.5 |
| C1 |
C16 |
F3 |
111.9 |
109.4 |
| C1 |
C16 |
F4 |
112.0 |
109.5 |
| C1 |
C2 |
H7 |
120.1 |
117.5 |
| C1 |
C2 |
H8 |
120.1 |
117.5 |
| F3 |
C16 |
F4 |
106.9 |
109.4 |
| H3 |
C3 |
H4 |
109.5 |
109.5 |
| H7 |
C2 |
H8 |
109.4 |
115.5 |
| H9 |
C |
H10 |
109.5 |
115.5 |
| H11 |
C11 |
H12 |
109.5 |
106.6 |
| H14 |
N2 |
H15 |
120.0 |
120.0 |
| H16 |
C15 |
H17 |
109.5 |
109.4 |
| H16 |
C15 |
H18 |
109.5 |
109.5 |
| H17 |
C15 |
H18 |
109.5 |
109.5 |
| H19 |
C14 |
H20 |
109.5 |
109.5 |
| H19 |
C14 |
H21 |
109.5 |
109.5 |
| H20 |
C14 |
H21 |
109.5 |
109.5 |
Torsion Angles for P6M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
C12 |
C11 |
H11 |
299.2 |
174.9 |
| C14 |
C12 |
C11 |
H12 |
58.2 |
59.1 |
| S |
C12 |
C14 |
H13 |
115.3 |
118.6 |
| C12 |
C11 |
C10 |
C15 |
181.4 |
99.3 |
| C12 |
C11 |
C10 |
N1 |
62.7 |
335.1 |
| H11 |
C11 |
C12 |
H12 |
241.0 |
115.9 |
| C14 |
C12 |
S |
H13 |
242.3 |
241.3 |
| S |
C12 |
C11 |
H11 |
57.5 |
296.6 |
| S |
C12 |
C11 |
H12 |
176.5 |
180.7 |
| C12 |
S |
C13 |
N1 |
1.5 |
29.6 |
| C12 |
S |
C13 |
N2 |
180.5 |
209.5 |
| N1 |
C10 |
C11 |
C15 |
241.3 |
235.8 |
| C11 |
C10 |
C15 |
H16 |
180.0 |
176.0 |
| C11 |
C10 |
C15 |
H17 |
300.0 |
295.9 |
| C11 |
C10 |
C15 |
H18 |
60.0 |
55.9 |
| C11 |
C10 |
N1 |
C13 |
330.4 |
350.9 |
| C6 |
C7 |
F1 |
C8 |
179.4 |
180.3 |
| F1 |
C7 |
C8 |
C9 |
178.9 |
180.0 |
| F1 |
C7 |
C8 |
H1 |
358.9 |
0.0 |
| F1 |
C7 |
C6 |
C5 |
181.2 |
180.0 |
| C13 |
S |
C12 |
H13 |
268.3 |
185.1 |
| C10 |
N1 |
C13 |
S |
359.4 |
1.9 |
| N1 |
C13 |
S |
N2 |
181.0 |
180.0 |
| S |
C13 |
N2 |
H14 |
360.0 |
0.1 |
| S |
C13 |
N2 |
H15 |
180.0 |
180.0 |
| F1 |
C7 |
C8 |
C6 |
179.4 |
180.3 |
| C8 |
C7 |
C6 |
C5 |
0.5 |
0.3 |
| C7 |
C8 |
C9 |
F |
179.5 |
180.0 |
| C7 |
C8 |
C9 |
C4 |
359.8 |
0.1 |
| C9 |
C8 |
C7 |
H1 |
180.0 |
180.0 |
| F1 |
C7 |
C6 |
C8 |
180.6 |
179.7 |
| C6 |
C7 |
C8 |
C9 |
359.5 |
359.7 |
| C6 |
C7 |
C8 |
H1 |
179.5 |
179.7 |
| C7 |
C6 |
C5 |
C4 |
0.2 |
360.0 |
| C7 |
C6 |
C5 |
H2 |
180.2 |
180.0 |
| C7 |
C8 |
C9 |
H1 |
180.0 |
180.0 |
| F |
C9 |
C8 |
C4 |
179.8 |
179.9 |
| C8 |
C9 |
C4 |
C3 |
182.6 |
180.0 |
| C10 |
C6 |
C5 |
H2 |
0.2 |
360.0 |
| C11 |
C10 |
C15 |
N1 |
241.2 |
231.1 |
| C15 |
C10 |
N1 |
C13 |
210.5 |
226.4 |
| H16 |
C15 |
C10 |
H17 |
240.0 |
240.0 |
| H16 |
C15 |
C10 |
H18 |
120.0 |
120.0 |
| H17 |
C15 |
C10 |
H18 |
240.0 |
240.0 |
| C11 |
C10 |
N1 |
C15 |
120.0 |
124.5 |
| S |
C13 |
N1 |
C10 |
359.4 |
1.9 |
| N1 |
C10 |
C15 |
H16 |
298.8 |
304.9 |
| N1 |
C10 |
C15 |
H17 |
58.8 |
64.8 |
| N1 |
C10 |
C15 |
H18 |
178.8 |
184.8 |
| C10 |
N1 |
C13 |
N2 |
180.5 |
181.9 |
| C5 |
C6 |
C7 |
C8 |
0.5 |
0.3 |
| C6 |
C5 |
C4 |
C3 |
177.5 |
180.0 |
| S |
C13 |
N1 |
N2 |
178.9 |
180.0 |
| C13 |
N1 |
C10 |
C15 |
210.5 |
226.4 |
| N1 |
C13 |
N2 |
H14 |
179.1 |
180.0 |
| N1 |
C13 |
N2 |
H15 |
359.1 |
359.9 |
| S |
C13 |
N2 |
N1 |
180.9 |
180.0 |
| H14 |
N2 |
C13 |
H15 |
180.0 |
180.1 |
| C8 |
C9 |
F |
C4 |
180.2 |
180.1 |
| F |
C9 |
C8 |
H1 |
359.5 |
360.0 |
| F |
C9 |
C4 |
C3 |
2.8 |
0.0 |
| C8 |
C9 |
C4 |
F |
179.8 |
179.9 |
| C4 |
C9 |
C8 |
H1 |
179.8 |
180.1 |
| C6 |
C5 |
C4 |
C9 |
359.2 |
359.8 |
| C5 |
C4 |
C9 |
C3 |
178.3 |
180.2 |
| C9 |
C4 |
C3 |
H3 |
250.5 |
44.9 |
| C9 |
C4 |
C3 |
H4 |
9.5 |
164.9 |
| C6 |
C5 |
C4 |
H2 |
180.0 |
180.0 |
| C9 |
C4 |
C5 |
C3 |
181.7 |
179.8 |
| C5 |
C4 |
C3 |
H3 |
72.3 |
224.7 |
| C5 |
C4 |
C3 |
H4 |
191.2 |
344.7 |
| N |
C3 |
C4 |
H3 |
239.5 |
240.0 |
| N |
C3 |
C4 |
H4 |
120.5 |
120.0 |
| H3 |
C3 |
C4 |
H4 |
241.1 |
240.0 |
| F2 |
C16 |
C1 |
C2 |
157.6 |
159.9 |
| C1 |
C16 |
F2 |
F3 |
237.1 |
120.0 |
| C1 |
C16 |
F2 |
F4 |
122.9 |
240.0 |
| F3 |
C16 |
F2 |
F4 |
245.9 |
119.9 |
| C4 |
C3 |
N |
H3 |
120.5 |
120.0 |
| C4 |
C3 |
N |
H4 |
239.5 |
240.0 |
| H3 |
C3 |
N |
H4 |
118.9 |
120.0 |
| C1 |
N |
C3 |
H3 |
70.7 |
66.0 |
| C1 |
N |
C3 |
H4 |
311.7 |
306.0 |
| C16 |
C1 |
N |
C2 |
214.2 |
214.3 |
| N |
C1 |
C16 |
F3 |
181.8 |
65.6 |
| N |
C1 |
C16 |
F4 |
61.8 |
185.5 |
| N |
C1 |
C2 |
H7 |
358.7 |
215.0 |
| N |
C1 |
C2 |
H8 |
217.5 |
360.0 |
| C |
C1 |
N |
H5 |
293.3 |
24.9 |
| C |
C1 |
C2 |
H7 |
250.6 |
107.5 |
| C |
C1 |
C2 |
H8 |
109.4 |
252.5 |
| C1 |
C2 |
C |
H7 |
250.6 |
107.5 |
| C1 |
C2 |
C |
H8 |
109.4 |
252.5 |
| H7 |
C2 |
C |
H8 |
218.8 |
145.0 |
| F2 |
C16 |
C1 |
F3 |
120.0 |
240.0 |
| F2 |
C16 |
C1 |
F4 |
240.1 |
120.0 |
| N |
C1 |
C16 |
C2 |
144.3 |
145.7 |
| C16 |
C1 |
N |
H5 |
79.0 |
170.5 |
| C16 |
C1 |
C2 |
H7 |
142.5 |
360.0 |
| C16 |
C1 |
C2 |
H8 |
1.3 |
145.0 |
| F3 |
C16 |
C1 |
F4 |
120.0 |
240.1 |
| N |
C1 |
C2 |
C16 |
216.1 |
215.0 |
| C2 |
C1 |
N |
H5 |
224.8 |
316.2 |
| C |
C2 |
C1 |
H7 |
109.4 |
252.5 |
| C |
C2 |
C1 |
H8 |
250.6 |
107.5 |
| C2 |
C1 |
C16 |
F3 |
37.5 |
279.9 |
| C2 |
C1 |
C16 |
F4 |
277.5 |
39.8 |
| H7 |
C2 |
C1 |
H8 |
141.2 |
215.0 |
| F2 |
C16 |
F3 |
F4 |
114.0 |
240.0 |
| F3 |
C16 |
C1 |
C2 |
37.5 |
279.9 |
| C1 |
C16 |
F3 |
F4 |
237.0 |
120.0 |
| F2 |
C16 |
F4 |
F3 |
245.9 |
120.0 |
| F4 |
C16 |
C1 |
C2 |
277.5 |
39.8 |
| C1 |
C16 |
F4 |
F3 |
122.9 |
240.1 |
| C7 |
C8 |
H1 |
C9 |
180.0 |
180.0 |
| H1 |
C8 |
C9 |
F |
359.5 |
360.0 |
| H1 |
C8 |
C9 |
C4 |
179.8 |
180.1 |
| C6 |
C5 |
H2 |
C4 |
180.0 |
180.0 |
| H2 |
C5 |
C4 |
C3 |
357.5 |
0.0 |
| C4 |
C3 |
H3 |
H4 |
118.3 |
120.0 |
| N |
C3 |
H3 |
H4 |
241.7 |
240.0 |
| C4 |
C3 |
H4 |
H3 |
241.7 |
240.0 |
| N |
C3 |
H4 |
H3 |
118.3 |
120.0 |
| H5 |
N |
C3 |
H3 |
191.7 |
189.9 |
| H5 |
N |
C3 |
H4 |
72.8 |
69.9 |
| H5 |
N |
C1 |
C16 |
79.0 |
170.5 |
| H5 |
N |
C1 |
C2 |
224.8 |
316.2 |
| C |
C2 |
H7 |
H8 |
144.8 |
214.3 |
| C1 |
C2 |
H7 |
H8 |
215.1 |
145.7 |
| C |
C2 |
H8 |
H7 |
215.2 |
145.7 |
| C1 |
C2 |
H8 |
H7 |
144.9 |
214.3 |
| H9 |
C |
C2 |
H7 |
360.0 |
145.0 |
| H9 |
C |
C2 |
H8 |
141.2 |
360.0 |
| H10 |
C |
C2 |
H7 |
218.8 |
360.0 |
| H10 |
C |
C2 |
H8 |
360.0 |
215.0 |
| C12 |
C11 |
H11 |
H12 |
118.4 |
242.7 |
| H11 |
C11 |
C10 |
C15 |
60.9 |
221.5 |
| H11 |
C11 |
C10 |
N1 |
302.2 |
97.2 |
| C12 |
C11 |
H12 |
H11 |
241.5 |
117.3 |
| H12 |
C11 |
C10 |
C15 |
301.9 |
337.2 |
| H12 |
C11 |
C10 |
N1 |
183.2 |
213.0 |
| H13 |
C12 |
C11 |
H11 |
175.8 |
54.7 |
| H13 |
C12 |
C11 |
H12 |
294.8 |
298.8 |
| H13 |
C12 |
S |
C13 |
268.3 |
185.1 |
| C13 |
N2 |
H14 |
H15 |
180.0 |
179.9 |
| C13 |
N2 |
H15 |
H14 |
180.0 |
180.1 |
| C10 |
C15 |
H16 |
H17 |
120.0 |
120.0 |
| C10 |
C15 |
H16 |
H18 |
240.0 |
240.0 |
| H17 |
C15 |
H16 |
H18 |
120.0 |
120.0 |
| C10 |
C15 |
H17 |
H16 |
240.0 |
240.0 |
| C10 |
C15 |
H17 |
H18 |
120.0 |
120.0 |
| H16 |
C15 |
H17 |
H18 |
240.0 |
240.0 |
| C10 |
C15 |
H18 |
H16 |
120.0 |
120.0 |
| C10 |
C15 |
H18 |
H17 |
240.0 |
240.0 |
| H16 |
C15 |
H18 |
H17 |
120.0 |
120.0 |
| H19 |
C14 |
C12 |
H13 |
303.3 |
180.5 |
| H20 |
C14 |
H19 |
H21 |
120.0 |
120.1 |
| H20 |
C14 |
C12 |
H13 |
63.4 |
300.5 |
| H19 |
C14 |
H20 |
H21 |
240.0 |
240.0 |
| H21 |
C14 |
C12 |
H13 |
183.4 |
60.6 |
| H19 |
C14 |
H21 |
H20 |
120.0 |
120.1 |