PDB Chemical Component P65
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P65
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NH1 |
C3 |
1.353 |
1.386 |
| C3 |
N2 |
1.362 |
1.323 |
| C3 |
N4 |
1.342 |
1.326 |
| N2 |
C1 |
1.372 |
1.326 |
| N4 |
C5 |
1.356 |
1.328 |
| C1 |
CM1 |
1.510 |
1.507 |
| C1 |
C6 |
1.388 |
1.384 |
| C5 |
C6 |
1.384 |
1.400 |
| C5 |
NH2 |
1.356 |
1.388 |
| C6 |
O7 |
1.357 |
1.362 |
| O7 |
C8 |
1.430 |
1.428 |
| C8 |
C9 |
1.537 |
1.530 |
| CL1 |
C13 |
1.540 |
1.736 |
| C13 |
C14 |
1.400 |
1.382 |
| C13 |
C12 |
1.387 |
1.388 |
| C14 |
C15 |
1.411 |
1.384 |
| C9 |
C10 |
1.517 |
1.530 |
| O11 |
C12 |
1.375 |
1.360 |
| O11 |
C10 |
1.422 |
1.429 |
| C12 |
C17 |
1.403 |
1.386 |
| C15 |
CL2 |
1.513 |
1.736 |
| C15 |
C16 |
1.368 |
1.385 |
| C17 |
C16 |
1.393 |
1.382 |
| C16 |
CL3 |
1.532 |
1.736 |
| NH2 |
H1 |
1.000 |
0.970 |
| NH2 |
H2 |
1.000 |
0.969 |
| NH1 |
H3 |
1.000 |
0.969 |
| NH1 |
H4 |
1.000 |
0.971 |
| CM1 |
H5 |
1.100 |
1.090 |
| CM1 |
H6 |
1.100 |
1.090 |
| CM1 |
H7 |
1.100 |
1.090 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H9 |
1.100 |
1.091 |
| C9 |
H10 |
1.100 |
1.090 |
| C9 |
H11 |
1.100 |
1.090 |
| C10 |
H12 |
1.100 |
1.090 |
| C10 |
H13 |
1.100 |
1.090 |
| C17 |
H14 |
1.080 |
1.080 |
| C14 |
H15 |
1.080 |
1.080 |
Bond Angles for P65
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NH1 |
C3 |
N2 |
122.3 |
119.2 |
| C3 |
N2 |
C1 |
120.6 |
121.0 |
| N2 |
C1 |
CM1 |
121.0 |
120.4 |
| N2 |
C1 |
C6 |
119.1 |
119.2 |
| N4 |
C5 |
C6 |
119.4 |
119.0 |
| C1 |
CM1 |
H5 |
109.5 |
109.5 |
| C1 |
CM1 |
H6 |
109.4 |
109.5 |
| C1 |
CM1 |
H7 |
109.5 |
109.5 |
| C1 |
C6 |
O7 |
120.9 |
120.8 |
| C5 |
C6 |
O7 |
119.8 |
120.8 |
| C5 |
NH2 |
H1 |
109.5 |
120.0 |
| C5 |
NH2 |
H2 |
109.5 |
120.0 |
| C6 |
O7 |
C8 |
118.3 |
117.0 |
| O7 |
C8 |
C9 |
111.8 |
109.5 |
| O7 |
C8 |
H8 |
108.9 |
109.5 |
| O7 |
C8 |
H9 |
108.9 |
109.5 |
| C8 |
C9 |
C10 |
111.7 |
109.5 |
| C9 |
C8 |
H8 |
108.9 |
109.4 |
| C9 |
C8 |
H9 |
108.9 |
109.5 |
| C8 |
C9 |
H10 |
108.9 |
109.4 |
| C8 |
C9 |
H11 |
108.9 |
109.5 |
| C13 |
C14 |
H15 |
119.9 |
120.0 |
| C10 |
C9 |
H10 |
108.9 |
109.5 |
| C10 |
C9 |
H11 |
108.9 |
109.5 |
| C9 |
C10 |
H12 |
109.3 |
109.5 |
| C9 |
C10 |
H13 |
109.3 |
109.5 |
| O11 |
C12 |
C17 |
120.2 |
120.0 |
| O11 |
C10 |
H12 |
109.3 |
109.4 |
| O11 |
C10 |
H13 |
109.3 |
109.4 |
| C12 |
C17 |
C16 |
120.8 |
120.0 |
| C12 |
C17 |
H14 |
119.6 |
120.0 |
| C17 |
C16 |
CL3 |
124.7 |
120.0 |
| C16 |
C17 |
H14 |
119.6 |
120.0 |
| H1 |
NH2 |
H2 |
109.5 |
120.0 |
| H3 |
NH1 |
H4 |
109.4 |
120.0 |
| H5 |
CM1 |
H6 |
109.5 |
109.4 |
| H5 |
CM1 |
H7 |
109.5 |
109.4 |
| H6 |
CM1 |
H7 |
109.5 |
109.5 |
| H8 |
C8 |
H9 |
109.5 |
109.4 |
| H10 |
C9 |
H11 |
109.5 |
109.4 |
| H12 |
C10 |
H13 |
109.5 |
109.5 |
Torsion Angles for P65
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NH1 |
C3 |
N2 |
C1 |
180.5 |
180.1 |
| C3 |
N2 |
C1 |
CM1 |
179.3 |
180.0 |
| C3 |
N2 |
C1 |
C6 |
359.6 |
360.0 |
| C3 |
N4 |
C5 |
C6 |
358.9 |
0.0 |
| N2 |
C1 |
CM1 |
H5 |
360.0 |
90.0 |
| N2 |
C1 |
CM1 |
H6 |
120.0 |
210.0 |
| N2 |
C1 |
CM1 |
H7 |
240.0 |
330.0 |
| N2 |
C1 |
C6 |
O7 |
180.9 |
180.3 |
| N4 |
C5 |
C6 |
O7 |
179.8 |
179.7 |
| N4 |
C5 |
NH2 |
H1 |
360.0 |
180.3 |
| N4 |
C5 |
NH2 |
H2 |
120.0 |
0.0 |
| N2 |
C1 |
CM1 |
C6 |
180.3 |
179.9 |
| CM1 |
C1 |
C6 |
O7 |
1.2 |
0.2 |
| H5 |
CM1 |
C1 |
H6 |
240.0 |
240.0 |
| H5 |
CM1 |
C1 |
H7 |
120.0 |
119.9 |
| H6 |
CM1 |
C1 |
H7 |
240.0 |
239.9 |
| N2 |
C1 |
C6 |
CM1 |
179.7 |
180.1 |
| C5 |
C6 |
C1 |
O7 |
178.6 |
179.8 |
| C1 |
C6 |
O7 |
C8 |
100.7 |
269.7 |
| N2 |
C1 |
C6 |
C5 |
359.5 |
0.0 |
| C1 |
C6 |
C5 |
O7 |
181.4 |
180.2 |
| C6 |
C5 |
NH2 |
H1 |
181.4 |
0.0 |
| C6 |
C5 |
NH2 |
H2 |
301.4 |
179.7 |
| C5 |
C6 |
O7 |
C8 |
282.2 |
90.0 |
| H1 |
NH2 |
C5 |
H2 |
240.0 |
180.3 |
| C6 |
O7 |
C8 |
C9 |
180.2 |
180.1 |
| C6 |
O7 |
C8 |
H8 |
300.6 |
300.0 |
| C6 |
O7 |
C8 |
H9 |
59.9 |
60.0 |
| O7 |
C8 |
C9 |
C10 |
59.1 |
180.0 |
| C9 |
C8 |
O7 |
H8 |
239.7 |
240.0 |
| C9 |
C8 |
O7 |
H9 |
120.3 |
120.1 |
| O7 |
C8 |
C9 |
H10 |
179.4 |
300.0 |
| O7 |
C8 |
C9 |
H11 |
298.7 |
60.0 |
| H8 |
C8 |
O7 |
H9 |
240.7 |
240.0 |
| O7 |
C8 |
C9 |
H8 |
120.4 |
120.0 |
| O7 |
C8 |
C9 |
H9 |
239.7 |
239.9 |
| C10 |
C9 |
C8 |
H10 |
239.7 |
240.0 |
| C10 |
C9 |
C8 |
H11 |
120.3 |
120.0 |
| C8 |
C9 |
C10 |
H12 |
200.5 |
299.9 |
| C8 |
C9 |
C10 |
H13 |
320.3 |
60.0 |
| H8 |
C8 |
C9 |
H9 |
119.3 |
119.9 |
| H10 |
C9 |
C8 |
H11 |
240.7 |
240.1 |
| CL1 |
C13 |
C14 |
H15 |
358.3 |
359.8 |
| C13 |
C12 |
C17 |
H14 |
179.5 |
180.2 |
| C10 |
C9 |
C8 |
H8 |
298.7 |
60.0 |
| C10 |
C9 |
C8 |
H9 |
179.4 |
300.1 |
| C8 |
C9 |
C10 |
H10 |
120.3 |
120.0 |
| C8 |
C9 |
C10 |
H11 |
239.6 |
240.0 |
| O11 |
C10 |
C9 |
H12 |
239.9 |
240.0 |
| O11 |
C10 |
C9 |
H13 |
120.1 |
120.0 |
| H10 |
C9 |
C10 |
H11 |
119.3 |
120.0 |
| H12 |
C10 |
C9 |
H13 |
240.2 |
239.9 |
| C12 |
O11 |
C10 |
H12 |
68.2 |
60.0 |
| C12 |
O11 |
C10 |
H13 |
308.5 |
300.0 |
| O11 |
C12 |
C17 |
C16 |
180.8 |
180.0 |
| O11 |
C12 |
C17 |
H14 |
0.8 |
360.0 |
| O11 |
C10 |
C9 |
H10 |
320.0 |
60.0 |
| O11 |
C10 |
C9 |
H11 |
200.7 |
300.0 |
| C9 |
C10 |
O11 |
H12 |
120.1 |
120.0 |
| C9 |
C10 |
O11 |
H13 |
239.9 |
240.0 |
| H12 |
C10 |
O11 |
H13 |
119.8 |
120.0 |
| C12 |
C17 |
C16 |
CL3 |
180.4 |
180.0 |
| C16 |
C17 |
C12 |
H14 |
180.0 |
180.0 |
| C15 |
C16 |
C17 |
H14 |
179.3 |
180.0 |
| C12 |
C17 |
C16 |
H14 |
180.0 |
180.0 |
| CL3 |
C16 |
C17 |
H14 |
0.4 |
0.0 |
| C5 |
NH2 |
H1 |
H2 |
120.0 |
179.7 |
| C5 |
NH2 |
H2 |
H1 |
240.0 |
180.3 |
| H3 |
NH1 |
C3 |
N2 |
0.0 |
359.9 |
| H4 |
NH1 |
C3 |
N2 |
120.0 |
180.0 |
| C1 |
CM1 |
H5 |
H6 |
120.0 |
120.0 |
| C1 |
CM1 |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
CM1 |
H5 |
H7 |
120.0 |
120.0 |
| C1 |
CM1 |
H6 |
H5 |
240.0 |
240.0 |
| C1 |
CM1 |
H6 |
H7 |
120.0 |
120.1 |
| H5 |
CM1 |
H6 |
H7 |
240.0 |
240.0 |
| C1 |
CM1 |
H7 |
H5 |
120.0 |
120.0 |
| C1 |
CM1 |
H7 |
H6 |
240.0 |
239.9 |
| H5 |
CM1 |
H7 |
H6 |
120.0 |
120.0 |
| O7 |
C8 |
H8 |
C9 |
237.9 |
240.0 |
| O7 |
C8 |
H8 |
H9 |
118.9 |
120.0 |
| H8 |
C8 |
C9 |
C10 |
298.7 |
60.0 |
| C9 |
C8 |
H8 |
H9 |
241.1 |
240.1 |
| H8 |
C8 |
C9 |
H10 |
59.0 |
180.0 |
| H8 |
C8 |
C9 |
H11 |
178.4 |
299.9 |
| O7 |
C8 |
H9 |
C9 |
122.1 |
120.1 |
| O7 |
C8 |
H9 |
H8 |
241.0 |
240.0 |
| H9 |
C8 |
C9 |
C10 |
179.4 |
300.1 |
| C9 |
C8 |
H9 |
H8 |
118.9 |
119.9 |
| H9 |
C8 |
C9 |
H10 |
299.7 |
60.1 |
| H9 |
C8 |
C9 |
H11 |
59.1 |
180.0 |
| C8 |
C9 |
H10 |
C10 |
237.9 |
240.0 |
| H10 |
C9 |
C8 |
H8 |
59.0 |
180.0 |
| H10 |
C9 |
C8 |
H9 |
299.7 |
60.1 |
| C8 |
C9 |
H10 |
H11 |
119.0 |
119.9 |
| C10 |
C9 |
H10 |
H11 |
241.1 |
240.0 |
| H10 |
C9 |
C10 |
H12 |
80.1 |
180.0 |
| H10 |
C9 |
C10 |
H13 |
199.9 |
300.0 |
| C8 |
C9 |
H11 |
C10 |
122.1 |
120.0 |
| H11 |
C9 |
C8 |
H8 |
178.4 |
299.9 |
| H11 |
C9 |
C8 |
H9 |
59.1 |
180.0 |
| C8 |
C9 |
H11 |
H10 |
241.0 |
240.1 |
| C10 |
C9 |
H11 |
H10 |
119.0 |
120.1 |
| H11 |
C9 |
C10 |
H12 |
320.8 |
59.9 |
| H11 |
C9 |
C10 |
H13 |
80.6 |
180.0 |
| H12 |
C10 |
C9 |
H10 |
80.1 |
180.0 |
| H12 |
C10 |
C9 |
H11 |
320.8 |
59.9 |
| C9 |
C10 |
H12 |
H13 |
119.7 |
120.1 |
| O11 |
C10 |
H12 |
H13 |
240.4 |
240.1 |
| H13 |
C10 |
C9 |
H10 |
199.9 |
300.0 |
| H13 |
C10 |
C9 |
H11 |
80.6 |
180.0 |
| C9 |
C10 |
H13 |
H12 |
240.3 |
239.9 |
| O11 |
C10 |
H13 |
H12 |
119.6 |
119.9 |
| C12 |
C17 |
H14 |
C16 |
180.0 |
180.0 |
| H14 |
C17 |
C16 |
CL3 |
0.4 |
0.0 |